RNA–Protein interactions for RNA: ENST00000470247.1

SREBF1-209, Transcript of sterol regulatory element binding transcription factor 1, humanhuman

TSL 5

Gene SREBF1, Length 374 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREBF1-209ENST00000470247 NISCHQ9Y2I1 1504 aa26.59■■□□□ 1.85
SREBF1-209ENST00000470247 CCDC180Q9P1Z9 1646 aa23.33■■□□□ 1.32
SREBF1-209ENST00000470247 ABCC9O60706 1549 aa22.49■■□□□ 1.19
SREBF1-209ENST00000470247 ZCCHC6Q5VYS8 1495 aaKnown RBP22.23■■□□□ 1.15
SREBF1-209ENST00000470247 DCAF8L2P0C7V8 631 aa22.03■■□□□ 1.12
SREBF1-209ENST00000470247 DCAF1Q9Y4B6 1507 aa22■■□□□ 1.11
SREBF1-209ENST00000470247 MYO15BQ96JP2 1530 aa21.91■■□□□ 1.1
SREBF1-209ENST00000470247 NACADO15069 1562 aa21.87■■□□□ 1.09
SREBF1-209ENST00000470247 RB1CC1Q8TDY2 1594 aa21.76■■□□□ 1.07
SREBF1-209ENST00000470247 SCRIBQ14160 1630 aa21.36■■□□□ 1.01
SREBF1-209ENST00000470247 SHROOM4Q9ULL8 1493 aa21.3■■□□□ 1
SREBF1-209ENST00000470247 UNC13AQ9UPW8 1703 aa21.27■■□□□ 1
SREBF1-209ENST00000470247 BICRAQ9NZM4 1560 aa21.18■□□□□ 0.98
SREBF1-209ENST00000470247 PABPN1Q86U42 306 aaKnown RBP eCLIP21.15■□□□□ 0.98
SREBF1-209ENST00000470247 CECR2Q9BXF3 1484 aa20.71■□□□□ 0.91
SREBF1-209ENST00000470247 EIF4G1Q04637 1599 aaKnown RBP20.53■□□□□ 0.88
SREBF1-209ENST00000470247 MROH2BQ7Z745 1585 aa20.52■□□□□ 0.88
SREBF1-209ENST00000470247 BAZ1AQ9NRL2 1556 aaPredicted RBP20.51■□□□□ 0.87
SREBF1-209ENST00000470247 SMARCA4P51532 1647 aa20.49■□□□□ 0.87
SREBF1-209ENST00000470247 RSF1Q96T23 1441 aaPredicted RBP20.46■□□□□ 0.87
SREBF1-209ENST00000470247 DNAJC5BQ9UF47 199 aa20.36■□□□□ 0.85
SREBF1-209ENST00000470247 CC2D2AQ9P2K1 1620 aa20.34■□□□□ 0.85
SREBF1-209ENST00000470247 ATAD2BQ9ULI0 1458 aa20.32■□□□□ 0.84
SREBF1-209ENST00000470247 PEG3Q9GZU2 1588 aa20.3■□□□□ 0.84
SREBF1-209ENST00000470247 WIZO95785 1651 aa20.28■□□□□ 0.84
SREBF1-209ENST00000470247 SUPT5HO00267 1087 aaKnown RBP20.27■□□□□ 0.84
SREBF1-209ENST00000470247 SMARCA2P51531 1590 aa20.25■□□□□ 0.83
SREBF1-209ENST00000470247 NCAPD3P42695 1498 aa20.24■□□□□ 0.83
SREBF1-209ENST00000470247 HMGXB3Q12766 1538 aa20.12■□□□□ 0.81
SREBF1-209ENST00000470247 BAZ1BQ9UIG0 1483 aaKnown RBP20.11■□□□□ 0.81
SREBF1-209ENST00000470247 TOP2AP11388 1531 aaKnown RBP20.07■□□□□ 0.8
SREBF1-209ENST00000470247 CCDC88BA6NC98 1476 aa19.9■□□□□ 0.78
SREBF1-209ENST00000470247 CADPSQ9ULU8 1353 aa19.68■□□□□ 0.74
SREBF1-209ENST00000470247 CFTRP13569 1480 aa19.65■□□□□ 0.74
SREBF1-209ENST00000470247 NESP48681 1621 aa19.62■□□□□ 0.73
SREBF1-209ENST00000470247 LAMC3Q9Y6N6 1575 aa19.55■□□□□ 0.72
SREBF1-209ENST00000470247 PDS5BQ9NTI5 1447 aa19.43■□□□□ 0.7
SREBF1-209ENST00000470247 FANCD2Q9BXW9 1451 aa19.41■□□□□ 0.7
SREBF1-209ENST00000470247 PRDM2Q13029 1718 aa19.39■□□□□ 0.7
SREBF1-209ENST00000470247 CEP164Q9UPV0 1460 aa19.32■□□□□ 0.68
SREBF1-209ENST00000470247 KIF21AQ7Z4S6 1674 aa19.31■□□□□ 0.68
SREBF1-209ENST00000470247 ERCC6Q03468 1493 aa19.28■□□□□ 0.68
SREBF1-209ENST00000470247 ABCC8Q09428 1581 aa19.27■□□□□ 0.68
SREBF1-209ENST00000470247 CHIC1Q5VXU3 224 aa19.25■□□□□ 0.67
SREBF1-209ENST00000470247 WRNQ14191 1432 aaPredicted RBP eCLIP19.24■□□□□ 0.67
SREBF1-209ENST00000470247 URB2Q14146 1524 aaKnown RBP19.22■□□□□ 0.67
SREBF1-209ENST00000470247 CUX1P39880 1505 aa19.21■□□□□ 0.67
SREBF1-209ENST00000470247 MRC2Q9UBG0 1479 aa19.21■□□□□ 0.67
SREBF1-209ENST00000470247 TOPBP1Q92547 1522 aa19.16■□□□□ 0.66
SREBF1-209ENST00000470247 THOC2Q8NI27 1593 aaKnown RBP19.16■□□□□ 0.66
SREBF1-209ENST00000470247 SYNJ1O43426 1573 aa19.15■□□□□ 0.66
SREBF1-209ENST00000470247 DNMBPQ6XZF7 1577 aa19.15■□□□□ 0.66
SREBF1-209ENST00000470247 WDR62O43379 1518 aa19.13■□□□□ 0.65
SREBF1-209ENST00000470247 TOP2BQ02880 1626 aa19.11■□□□□ 0.65
SREBF1-209ENST00000470247 TRIM41Q8WV44 630 aa19.11■□□□□ 0.65
SREBF1-209ENST00000470247 BIVM-ERCC5R4GMW8 1640 aa19.09■□□□□ 0.65
SREBF1-209ENST00000470247 POLA1P09884 1462 aaPredicted RBP19.04■□□□□ 0.64
SREBF1-209ENST00000470247 FGD5Q6ZNL6 1462 aa19.04■□□□□ 0.64
SREBF1-209ENST00000470247 CUX2O14529 1486 aa19.02■□□□□ 0.63
SREBF1-209ENST00000470247 RAD54L2Q9Y4B4 1467 aa18.98■□□□□ 0.63
SREBF1-209ENST00000470247 SOGA1O94964 1423 aa18.98■□□□□ 0.63
SREBF1-209ENST00000470247 TARBP1Q13395 1621 aaKnown RBP18.91■□□□□ 0.62
SREBF1-209ENST00000470247 IFT140Q96RY7 1462 aa18.9■□□□□ 0.62
SREBF1-209ENST00000470247 ABCA10Q8WWZ4 1543 aa18.9■□□□□ 0.62
SREBF1-209ENST00000470247 RUSC2Q8N2Y8 1516 aa18.84■□□□□ 0.61
SREBF1-209ENST00000470247 ZNF608Q9ULD9 1512 aaPredicted RBP18.84■□□□□ 0.61
SREBF1-209ENST00000470247 TDRD9Q8NDG6 1382 aaKnown RBP18.83■□□□□ 0.61
SREBF1-209ENST00000470247 WDR97A6NE52 1622 aa18.82■□□□□ 0.6
SREBF1-209ENST00000470247 AQRO60306 1485 aaKnown RBP eCLIP18.79■□□□□ 0.62e-10■■■■■ 43.2
SREBF1-209ENST00000470247 KIF27Q86VH2 1401 aa18.78■□□□□ 0.6
SREBF1-209ENST00000470247 GAPVD1Q14C86 1478 aa18.75■□□□□ 0.59
SREBF1-209ENST00000470247 ABCA5Q8WWZ7 1642 aa18.74■□□□□ 0.59
SREBF1-209ENST00000470247 IGF1RP08069 1367 aa18.74■□□□□ 0.59
SREBF1-209ENST00000470247 FAM9AQ8IZU1 332 aaPredicted RBP18.72■□□□□ 0.59
SREBF1-209ENST00000470247 EEA1Q15075 1411 aa18.71■□□□□ 0.59
SREBF1-209ENST00000470247 EIF4G3O43432 1585 aaKnown RBP18.7■□□□□ 0.58
SREBF1-209ENST00000470247 CSRNP3Q8WYN3 585 aa18.69■□□□□ 0.58
SREBF1-209ENST00000470247 GRIN2BQ13224 1484 aa18.67■□□□□ 0.58
SREBF1-209ENST00000470247 ERICH3Q5RHP9 1530 aa18.64■□□□□ 0.58
SREBF1-209ENST00000470247 PBRM1Q86U86 1689 aa18.6■□□□□ 0.57
SREBF1-209ENST00000470247 PRXQ9BXM0 1461 aa18.59■□□□□ 0.57
SREBF1-209ENST00000470247 CARMIL1Q5VZK9 1371 aa18.59■□□□□ 0.57
SREBF1-209ENST00000470247 SNAPC4Q5SXM2 1469 aa18.58■□□□□ 0.57
SREBF1-209ENST00000470247 MAGI1Q96QZ7 1491 aaPredicted RBP18.56■□□□□ 0.56
SREBF1-209ENST00000470247 FHAD1B1AJZ9 1412 aa18.55■□□□□ 0.56
SREBF1-209ENST00000470247 ADAMTS12P58397 1594 aa18.52■□□□□ 0.56
SREBF1-209ENST00000470247 CUL7Q14999 1698 aa18.5■□□□□ 0.55
SREBF1-209ENST00000470247 RAPGEF2Q9Y4G8 1499 aa18.5■□□□□ 0.55
SREBF1-209ENST00000470247 SYNJ2O15056 1496 aa18.49■□□□□ 0.55
SREBF1-209ENST00000470247 LOC105371045A0A1W2PR82 267 aa18.47■□□□□ 0.55
SREBF1-209ENST00000470247 KIF21BO75037 1637 aa18.47■□□□□ 0.55
SREBF1-209ENST00000470247 CHMP7Q8WUX9 453 aaPredicted RBP18.46■□□□□ 0.55
SREBF1-209ENST00000470247 FBLN2P98095 1184 aa18.44■□□□□ 0.54
SREBF1-209ENST00000470247 EHMT2Q96KQ7 1210 aa18.43■□□□□ 0.54
SREBF1-209ENST00000470247 GRIN2AQ12879 1464 aa18.43■□□□□ 0.54
SREBF1-209ENST00000470247 GOLGA3Q08378 1498 aa18.41■□□□□ 0.54
SREBF1-209ENST00000470247 NUP160Q12769 1436 aa18.37■□□□□ 0.53
SREBF1-209ENST00000470247 CHD1O14646 1710 aa18.36■□□□□ 0.53
SREBF1-209ENST00000470247 UBTFP17480 764 aaKnown RBP18.35■□□□□ 0.53
SREBF1-209ENST00000470247 CEP170Q5SW79 1584 aa18.33■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms