RNA–Protein interactions for RNA: ENST00000469923.5

SHROOM3-203, Transcript of shroom family member 3, humanhuman

TSL 3

Gene SHROOM3, Length 764 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-203ENST00000469923 NISCHQ9Y2I1 1504 aa22.81■■□□□ 1.24
SHROOM3-203ENST00000469923 ABCC9O60706 1549 aa20.34■□□□□ 0.85
SHROOM3-203ENST00000469923 CCDC180Q9P1Z9 1646 aa20.11■□□□□ 0.81
SHROOM3-203ENST00000469923 DCAF8L2P0C7V8 631 aa19.48■□□□□ 0.71
SHROOM3-203ENST00000469923 DNAJC5BQ9UF47 199 aa19.2■□□□□ 0.66
SHROOM3-203ENST00000469923 RB1CC1Q8TDY2 1594 aa19.16■□□□□ 0.66
SHROOM3-203ENST00000469923 PABPN1Q86U42 306 aaKnown RBP eCLIP19.16■□□□□ 0.66
SHROOM3-203ENST00000469923 NACADO15069 1562 aa19.07■□□□□ 0.64
SHROOM3-203ENST00000469923 ZCCHC6Q5VYS8 1495 aaKnown RBP18.89■□□□□ 0.61
SHROOM3-203ENST00000469923 UNC13AQ9UPW8 1703 aa18.81■□□□□ 0.6
SHROOM3-203ENST00000469923 BICRAQ9NZM4 1560 aa18.8■□□□□ 0.6
SHROOM3-203ENST00000469923 MYO15BQ96JP2 1530 aa18.79■□□□□ 0.6
SHROOM3-203ENST00000469923 DCAF1Q9Y4B6 1507 aa18.67■□□□□ 0.58
SHROOM3-203ENST00000469923 SCRIBQ14160 1630 aa18.62■□□□□ 0.57
SHROOM3-203ENST00000469923 CC2D2AQ9P2K1 1620 aa18.26■□□□□ 0.51
SHROOM3-203ENST00000469923 EIF4G1Q04637 1599 aaKnown RBP18.23■□□□□ 0.51
SHROOM3-203ENST00000469923 CECR2Q9BXF3 1484 aa18.21■□□□□ 0.51
SHROOM3-203ENST00000469923 SHROOM4Q9ULL8 1493 aa18.17■□□□□ 0.5
SHROOM3-203ENST00000469923 ATAD2BQ9ULI0 1458 aa17.75■□□□□ 0.43
SHROOM3-203ENST00000469923 NCAPD3P42695 1498 aa17.73■□□□□ 0.43
SHROOM3-203ENST00000469923 SMARCA4P51532 1647 aa17.69■□□□□ 0.42
SHROOM3-203ENST00000469923 MROH2BQ7Z745 1585 aa17.68■□□□□ 0.42
SHROOM3-203ENST00000469923 NESP48681 1621 aa17.58■□□□□ 0.41
SHROOM3-203ENST00000469923 BAZ1AQ9NRL2 1556 aaPredicted RBP17.57■□□□□ 0.4
SHROOM3-203ENST00000469923 SMARCA2P51531 1590 aa17.53■□□□□ 0.4
SHROOM3-203ENST00000469923 BAZ1BQ9UIG0 1483 aaKnown RBP17.51■□□□□ 0.39
SHROOM3-203ENST00000469923 HMGXB3Q12766 1538 aa17.47■□□□□ 0.39
SHROOM3-203ENST00000469923 WIZO95785 1651 aa17.44■□□□□ 0.38
SHROOM3-203ENST00000469923 PEG3Q9GZU2 1588 aa17.44■□□□□ 0.38
SHROOM3-203ENST00000469923 RSF1Q96T23 1441 aaPredicted RBP17.39■□□□□ 0.38
SHROOM3-203ENST00000469923 ERCC6Q03468 1493 aa17.39■□□□□ 0.37
SHROOM3-203ENST00000469923 DNAJC5Q9H3Z4 198 aa17.27■□□□□ 0.36
SHROOM3-203ENST00000469923 CADPSQ9ULU8 1353 aa17.26■□□□□ 0.35
SHROOM3-203ENST00000469923 CUX2O14529 1486 aa17.19■□□□□ 0.34
SHROOM3-203ENST00000469923 LAMC3Q9Y6N6 1575 aa17.16■□□□□ 0.34
SHROOM3-203ENST00000469923 KIF21AQ7Z4S6 1674 aa17.16■□□□□ 0.34
SHROOM3-203ENST00000469923 PDS5BQ9NTI5 1447 aa17.14■□□□□ 0.33
SHROOM3-203ENST00000469923 THOC2Q8NI27 1593 aaKnown RBP17.12■□□□□ 0.33
SHROOM3-203ENST00000469923 TOP2AP11388 1531 aaKnown RBP17.1■□□□□ 0.33
SHROOM3-203ENST00000469923 CCDC88BA6NC98 1476 aa17.08■□□□□ 0.32
SHROOM3-203ENST00000469923 CFTRP13569 1480 aa17.05■□□□□ 0.32
SHROOM3-203ENST00000469923 FANCD2Q9BXW9 1451 aa17.03■□□□□ 0.32
SHROOM3-203ENST00000469923 MRC2Q9UBG0 1479 aa17■□□□□ 0.31
SHROOM3-203ENST00000469923 CEP164Q9UPV0 1460 aa16.95■□□□□ 0.3
SHROOM3-203ENST00000469923 SUPT5HO00267 1087 aaKnown RBP16.95■□□□□ 0.3
SHROOM3-203ENST00000469923 URB2Q14146 1524 aaKnown RBP16.95■□□□□ 0.3
SHROOM3-203ENST00000469923 WDR62O43379 1518 aa16.91■□□□□ 0.3
SHROOM3-203ENST00000469923 ZNF608Q9ULD9 1512 aaPredicted RBP16.77■□□□□ 0.28
SHROOM3-203ENST00000469923 TOPBP1Q92547 1522 aa16.73■□□□□ 0.27
SHROOM3-203ENST00000469923 TRIM41Q8WV44 630 aa16.68■□□□□ 0.26
SHROOM3-203ENST00000469923 AQRO60306 1485 aaKnown RBP eCLIP16.67■□□□□ 0.26
SHROOM3-203ENST00000469923 RAD54L2Q9Y4B4 1467 aa16.67■□□□□ 0.26
SHROOM3-203ENST00000469923 OSCARQ8IYS5 282 aa16.66■□□□□ 0.26
SHROOM3-203ENST00000469923 PRDM2Q13029 1718 aa16.63■□□□□ 0.25
SHROOM3-203ENST00000469923 TDRD9Q8NDG6 1382 aaKnown RBP16.62■□□□□ 0.25
SHROOM3-203ENST00000469923 IFT140Q96RY7 1462 aa16.61■□□□□ 0.25
SHROOM3-203ENST00000469923 DNMBPQ6XZF7 1577 aa16.59■□□□□ 0.25
SHROOM3-203ENST00000469923 POLA1P09884 1462 aaPredicted RBP16.58■□□□□ 0.24
SHROOM3-203ENST00000469923 CUX1P39880 1505 aa16.56■□□□□ 0.24
SHROOM3-203ENST00000469923 SOGA1O94964 1423 aa16.55■□□□□ 0.24
SHROOM3-203ENST00000469923 FBLN2P98095 1184 aa16.54■□□□□ 0.24
SHROOM3-203ENST00000469923 TARBP1Q13395 1621 aaKnown RBP16.54■□□□□ 0.24
SHROOM3-203ENST00000469923 ABCC8Q09428 1581 aa16.52■□□□□ 0.24
SHROOM3-203ENST00000469923 FGD5Q6ZNL6 1462 aa16.51■□□□□ 0.23
SHROOM3-203ENST00000469923 EIF4G3O43432 1585 aaKnown RBP16.47■□□□□ 0.23
SHROOM3-203ENST00000469923 CYB5RLQ6IPT4 315 aa16.38■□□□□ 0.21
SHROOM3-203ENST00000469923 SNAPC4Q5SXM2 1469 aa16.37■□□□□ 0.21
SHROOM3-203ENST00000469923 CHMP7Q8WUX9 453 aaPredicted RBP16.36■□□□□ 0.21
SHROOM3-203ENST00000469923 RIMBP3CA6NJZ7 1639 aa16.34■□□□□ 0.21
SHROOM3-203ENST00000469923 RIMBP3BA6NNM3 1639 aa16.34■□□□□ 0.21
SHROOM3-203ENST00000469923 RIMBP3Q9UFD9 1639 aa16.34■□□□□ 0.21
SHROOM3-203ENST00000469923 CHD1O14646 1710 aa16.33■□□□□ 0.21
SHROOM3-203ENST00000469923 SYNJ1O43426 1573 aa16.32■□□□□ 0.2
SHROOM3-203ENST00000469923 ARHGEF11O15085 1522 aa16.3■□□□□ 0.2
SHROOM3-203ENST00000469923 WRNQ14191 1432 aaPredicted RBP eCLIP16.3■□□□□ 0.2
SHROOM3-203ENST00000469923 GAPVD1Q14C86 1478 aa16.29■□□□□ 0.2
SHROOM3-203ENST00000469923 GRIN2BQ13224 1484 aa16.29■□□□□ 0.2
SHROOM3-203ENST00000469923 ABCA10Q8WWZ4 1543 aa16.26■□□□□ 0.19
SHROOM3-203ENST00000469923 WDR97A6NE52 1622 aa16.23■□□□□ 0.19
SHROOM3-203ENST00000469923 ARAP1Q96P48 1450 aa16.22■□□□□ 0.19
SHROOM3-203ENST00000469923 TOP2BQ02880 1626 aa16.21■□□□□ 0.19
SHROOM3-203ENST00000469923 SYNJ2O15056 1496 aa16.2■□□□□ 0.18
SHROOM3-203ENST00000469923 MAGI1Q96QZ7 1491 aaPredicted RBP16.19■□□□□ 0.18
SHROOM3-203ENST00000469923 ABCA5Q8WWZ7 1642 aa16.18■□□□□ 0.18
SHROOM3-203ENST00000469923 BIVM-ERCC5R4GMW8 1640 aa16.17■□□□□ 0.18
SHROOM3-203ENST00000469923 CLASP1Q7Z460 1538 aa16.16■□□□□ 0.18
SHROOM3-203ENST00000469923 PBRM1Q86U86 1689 aa16.14■□□□□ 0.18
SHROOM3-203ENST00000469923 ERCC6L2Q5T890 1561 aa16.13■□□□□ 0.17
SHROOM3-203ENST00000469923 IGF1RP08069 1367 aa16.1■□□□□ 0.17
SHROOM3-203ENST00000469923 TRHP20396 242 aaPredicted RBP16.09■□□□□ 0.17
SHROOM3-203ENST00000469923 GRIN2AQ12879 1464 aa16.09■□□□□ 0.17
SHROOM3-203ENST00000469923 FHAD1B1AJZ9 1412 aa16.07■□□□□ 0.16
SHROOM3-203ENST00000469923 CEP170Q5SW79 1584 aa16.06■□□□□ 0.16
SHROOM3-203ENST00000469923 ADAMTS12P58397 1594 aa16.05■□□□□ 0.16
SHROOM3-203ENST00000469923 NUP160Q12769 1436 aa16.04■□□□□ 0.16
SHROOM3-203ENST00000469923 JPH4Q96JJ6 628 aa16.03■□□□□ 0.16
SHROOM3-203ENST00000469923 RUSC2Q8N2Y8 1516 aa16.02■□□□□ 0.15
SHROOM3-203ENST00000469923 ERICH3Q5RHP9 1530 aa15.99■□□□□ 0.15
SHROOM3-203ENST00000469923 PRG4Q92954 1404 aaPredicted RBP15.95■□□□□ 0.14
SHROOM3-203ENST00000469923 KIF27Q86VH2 1401 aa15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms