RNA–Protein interactions for RNA: ENST00000468612.5

NEDD9-207, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 3

Gene NEDD9, Length 809 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-207ENST00000468612 NISCHQ9Y2I1 1504 aa28.97■■■□□ 2.23
NEDD9-207ENST00000468612 ABCC9O60706 1549 aa27■■□□□ 1.91
NEDD9-207ENST00000468612 CCDC180Q9P1Z9 1646 aa26.29■■□□□ 1.8
NEDD9-207ENST00000468612 DNAJC5BQ9UF47 199 aa26.04■■□□□ 1.76
NEDD9-207ENST00000468612 RB1CC1Q8TDY2 1594 aa25.38■■□□□ 1.65
NEDD9-207ENST00000468612 NACADO15069 1562 aa25.05■■□□□ 1.6
NEDD9-207ENST00000468612 PABPN1Q86U42 306 aaKnown RBP eCLIP25.02■■□□□ 1.6
NEDD9-207ENST00000468612 UNC13AQ9UPW8 1703 aa24.79■■□□□ 1.56
NEDD9-207ENST00000468612 BICRAQ9NZM4 1560 aa24.71■■□□□ 1.55
NEDD9-207ENST00000468612 DCAF8L2P0C7V8 631 aa24.68■■□□□ 1.54
NEDD9-207ENST00000468612 MYO15BQ96JP2 1530 aa24.5■■□□□ 1.51
NEDD9-207ENST00000468612 DNAJC5Q9H3Z4 198 aa24.44■■□□□ 1.5
NEDD9-207ENST00000468612 CECR2Q9BXF3 1484 aa24.42■■□□□ 1.5
NEDD9-207ENST00000468612 CC2D2AQ9P2K1 1620 aa24.36■■□□□ 1.49
NEDD9-207ENST00000468612 SHROOM4Q9ULL8 1493 aa24.31■■□□□ 1.48
NEDD9-207ENST00000468612 EIF4G1Q04637 1599 aaKnown RBP24.14■■□□□ 1.45
NEDD9-207ENST00000468612 DCAF1Q9Y4B6 1507 aa23.91■■□□□ 1.42
NEDD9-207ENST00000468612 SCRIBQ14160 1630 aa23.89■■□□□ 1.42
NEDD9-207ENST00000468612 ZCCHC6Q5VYS8 1495 aaKnown RBP23.87■■□□□ 1.41
NEDD9-207ENST00000468612 CUX2O14529 1486 aa23.61■■□□□ 1.37
NEDD9-207ENST00000468612 ERCC6Q03468 1493 aa23.35■■□□□ 1.33
NEDD9-207ENST00000468612 NCAPD3P42695 1498 aa23.16■■□□□ 1.3
NEDD9-207ENST00000468612 NESP48681 1621 aa23■■□□□ 1.27
NEDD9-207ENST00000468612 TRIM41Q8WV44 630 aa22.99■■□□□ 1.27
NEDD9-207ENST00000468612 ATAD2BQ9ULI0 1458 aa22.98■■□□□ 1.27
NEDD9-207ENST00000468612 THOC2Q8NI27 1593 aaKnown RBP22.93■■□□□ 1.26
NEDD9-207ENST00000468612 HMGXB3Q12766 1538 aa22.91■■□□□ 1.26
NEDD9-207ENST00000468612 SMARCA2P51531 1590 aa22.84■■□□□ 1.25
NEDD9-207ENST00000468612 SMARCA4P51532 1647 aa22.74■■□□□ 1.23
NEDD9-207ENST00000468612 LAMC3Q9Y6N6 1575 aa22.72■■□□□ 1.23
NEDD9-207ENST00000468612 BAZ1BQ9UIG0 1483 aaKnown RBP22.68■■□□□ 1.22
NEDD9-207ENST00000468612 KIF21AQ7Z4S6 1674 aa22.65■■□□□ 1.22
NEDD9-207ENST00000468612 PDS5BQ9NTI5 1447 aa22.62■■□□□ 1.21
NEDD9-207ENST00000468612 PEG3Q9GZU2 1588 aa22.56■■□□□ 1.2
NEDD9-207ENST00000468612 BAZ1AQ9NRL2 1556 aaPredicted RBP22.52■■□□□ 1.2
NEDD9-207ENST00000468612 MRC2Q9UBG0 1479 aa22.47■■□□□ 1.19
NEDD9-207ENST00000468612 WDR62O43379 1518 aa22.45■■□□□ 1.18
NEDD9-207ENST00000468612 CADPSQ9ULU8 1353 aa22.4■■□□□ 1.18
NEDD9-207ENST00000468612 OSCARQ8IYS5 282 aa22.37■■□□□ 1.17
NEDD9-207ENST00000468612 MROH2BQ7Z745 1585 aa22.31■■□□□ 1.16
NEDD9-207ENST00000468612 CEP164Q9UPV0 1460 aa22.22■■□□□ 1.15
NEDD9-207ENST00000468612 RIMBP3CA6NJZ7 1639 aa22.17■■□□□ 1.14
NEDD9-207ENST00000468612 RIMBP3BA6NNM3 1639 aa22.17■■□□□ 1.14
NEDD9-207ENST00000468612 RIMBP3Q9UFD9 1639 aa22.17■■□□□ 1.14
NEDD9-207ENST00000468612 FANCD2Q9BXW9 1451 aa22.14■■□□□ 1.13
NEDD9-207ENST00000468612 ARHGEF11O15085 1522 aa22.04■■□□□ 1.12
NEDD9-207ENST00000468612 URB2Q14146 1524 aaKnown RBP22.02■■□□□ 1.12
NEDD9-207ENST00000468612 CFTRP13569 1480 aa22■■□□□ 1.11
NEDD9-207ENST00000468612 WIZO95785 1651 aa21.98■■□□□ 1.11
NEDD9-207ENST00000468612 CYB5RLQ6IPT4 315 aa21.89■■□□□ 1.09
NEDD9-207ENST00000468612 ZNF608Q9ULD9 1512 aaPredicted RBP21.86■■□□□ 1.09
NEDD9-207ENST00000468612 TRHP20396 242 aaPredicted RBP21.85■■□□□ 1.09
NEDD9-207ENST00000468612 IFT140Q96RY7 1462 aa21.82■■□□□ 1.08
NEDD9-207ENST00000468612 ARAP1Q96P48 1450 aa21.79■■□□□ 1.08
NEDD9-207ENST00000468612 AEBP2Q6ZN18 517 aaPredicted RBP21.75■■□□□ 1.07
NEDD9-207ENST00000468612 EIF4G3O43432 1585 aaKnown RBP21.68■■□□□ 1.06
NEDD9-207ENST00000468612 TOP2AP11388 1531 aaKnown RBP21.67■■□□□ 1.06
NEDD9-207ENST00000468612 PRDM2Q13029 1718 aa21.66■■□□□ 1.06
NEDD9-207ENST00000468612 RSF1Q96T23 1441 aaPredicted RBP21.66■■□□□ 1.06
NEDD9-207ENST00000468612 TOPBP1Q92547 1522 aa21.65■■□□□ 1.06
NEDD9-207ENST00000468612 CHD1O14646 1710 aa21.63■■□□□ 1.05
NEDD9-207ENST00000468612 AQRO60306 1485 aaKnown RBP eCLIP21.56■■□□□ 1.04
NEDD9-207ENST00000468612 ABCC8Q09428 1581 aa21.53■■□□□ 1.04
NEDD9-207ENST00000468612 TARBP1Q13395 1621 aaKnown RBP21.51■■□□□ 1.03
NEDD9-207ENST00000468612 FBLN2P98095 1184 aa21.51■■□□□ 1.03
NEDD9-207ENST00000468612 DNMBPQ6XZF7 1577 aa21.48■■□□□ 1.03
NEDD9-207ENST00000468612 CCDC88BA6NC98 1476 aa21.45■■□□□ 1.02
NEDD9-207ENST00000468612 CLASP1Q7Z460 1538 aa21.43■■□□□ 1.02
NEDD9-207ENST00000468612 POLA1P09884 1462 aaPredicted RBP21.38■■□□□ 1.01
NEDD9-207ENST00000468612 SNAPC4Q5SXM2 1469 aa21.32■■□□□ 1
NEDD9-207ENST00000468612 TDRD9Q8NDG6 1382 aaKnown RBP21.31■■□□□ 1
NEDD9-207ENST00000468612 RAD54L2Q9Y4B4 1467 aa21.31■■□□□ 1
NEDD9-207ENST00000468612 SYNJ1O43426 1573 aa21.31■■□□□ 1
NEDD9-207ENST00000468612 SOGA1O94964 1423 aa21.25■□□□□ 0.99
NEDD9-207ENST00000468612 CHMP7Q8WUX9 453 aaPredicted RBP21.25■□□□□ 0.99
NEDD9-207ENST00000468612 WDR97A6NE52 1622 aa21.24■□□□□ 0.99
NEDD9-207ENST00000468612 MAGI1Q96QZ7 1491 aaPredicted RBP21.24■□□□□ 0.99
NEDD9-207ENST00000468612 GAPVD1Q14C86 1478 aa21.23■□□□□ 0.99
NEDD9-207ENST00000468612 SYNJ2O15056 1496 aa21.18■□□□□ 0.98
NEDD9-207ENST00000468612 GRIN2BQ13224 1484 aa21.16■□□□□ 0.98
NEDD9-207ENST00000468612 FGD5Q6ZNL6 1462 aa21.13■□□□□ 0.97
NEDD9-207ENST00000468612 ERCC6L2Q5T890 1561 aa21.03■□□□□ 0.96
NEDD9-207ENST00000468612 CUX1P39880 1505 aa21.01■□□□□ 0.95
NEDD9-207ENST00000468612 PBRM1Q86U86 1689 aa20.99■□□□□ 0.95
NEDD9-207ENST00000468612 ILDR1Q86SU0 546 aaPredicted RBP20.96■□□□□ 0.95
NEDD9-207ENST00000468612 KIF13AQ9H1H9 1805 aa20.95■□□□□ 0.94
NEDD9-207ENST00000468612 CEP170Q5SW79 1584 aa20.92■□□□□ 0.94
NEDD9-207ENST00000468612 ABCA5Q8WWZ7 1642 aa20.89■□□□□ 0.93
NEDD9-207ENST00000468612 GRIN2AQ12879 1464 aa20.88■□□□□ 0.93
NEDD9-207ENST00000468612 NUP160Q12769 1436 aa20.87■□□□□ 0.93
NEDD9-207ENST00000468612 ABCA10Q8WWZ4 1543 aa20.87■□□□□ 0.93
NEDD9-207ENST00000468612 KDM4FA0A1W2PPD8 638 aa20.85■□□□□ 0.93
NEDD9-207ENST00000468612 SHROOM2Q13796 1616 aa20.85■□□□□ 0.93
NEDD9-207ENST00000468612 ADAMTS12P58397 1594 aa20.78■□□□□ 0.92
NEDD9-207ENST00000468612 ABCC10Q5T3U5 1492 aa20.78■□□□□ 0.92
NEDD9-207ENST00000468612 FAM69CQ0P6D2 419 aa20.76■□□□□ 0.91
NEDD9-207ENST00000468612 FHAD1B1AJZ9 1412 aa20.7■□□□□ 0.9
NEDD9-207ENST00000468612 PRG4Q92954 1404 aaPredicted RBP20.7■□□□□ 0.9
NEDD9-207ENST00000468612 MAPKBP1O60336 1514 aa20.69■□□□□ 0.9
NEDD9-207ENST00000468612 DIP2BQ9P265 1576 aa20.69■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms