RNA–Protein interactions for RNA: ENST00000468253.1

NPHP4-206, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 781 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-206ENST00000468253 NISCHQ9Y2I1 1504 aa48.29■■■■■ 5.32
NPHP4-206ENST00000468253 CCDC180Q9P1Z9 1646 aa42.74■■■■■ 4.43
NPHP4-206ENST00000468253 ABCC9O60706 1549 aa41.82■■■■■ 4.29
NPHP4-206ENST00000468253 DCAF8L2P0C7V8 631 aa40.41■■■■■ 4.06
NPHP4-206ENST00000468253 NACADO15069 1562 aa40.31■■■■■ 4.04
NPHP4-206ENST00000468253 RB1CC1Q8TDY2 1594 aa40.28■■■■■ 4.04
NPHP4-206ENST00000468253 ZCCHC6Q5VYS8 1495 aaKnown RBP40.19■■■■■ 4.03
NPHP4-206ENST00000468253 MYO15BQ96JP2 1530 aa40.19■■■■■ 4.02
NPHP4-206ENST00000468253 DCAF1Q9Y4B6 1507 aa40.01■■■■■ 4
NPHP4-206ENST00000468253 PABPN1Q86U42 306 aaKnown RBP eCLIP39.22■■■■□ 3.87
NPHP4-206ENST00000468253 UNC13AQ9UPW8 1703 aa39.11■■■■□ 3.85
NPHP4-206ENST00000468253 BICRAQ9NZM4 1560 aa39.02■■■■□ 3.84
NPHP4-206ENST00000468253 SCRIBQ14160 1630 aa38.96■■■■□ 3.83
NPHP4-206ENST00000468253 SHROOM4Q9ULL8 1493 aa38.75■■■■□ 3.79
NPHP4-206ENST00000468253 DNAJC5BQ9UF47 199 aa38.48■■■■□ 3.75
NPHP4-206ENST00000468253 EIF4G1Q04637 1599 aaKnown RBP37.99■■■■□ 3.67
NPHP4-206ENST00000468253 CC2D2AQ9P2K1 1620 aa37.79■■■■□ 3.64
NPHP4-206ENST00000468253 CECR2Q9BXF3 1484 aa37.63■■■■□ 3.61
NPHP4-206ENST00000468253 BAZ1AQ9NRL2 1556 aaPredicted RBP37.39■■■■□ 3.58
NPHP4-206ENST00000468253 SMARCA4P51532 1647 aa37.34■■■■□ 3.57
NPHP4-206ENST00000468253 NCAPD3P42695 1498 aa37.3■■■■□ 3.56
NPHP4-206ENST00000468253 ATAD2BQ9ULI0 1458 aa37.26■■■■□ 3.55
NPHP4-206ENST00000468253 SMARCA2P51531 1590 aa37.18■■■■□ 3.54
NPHP4-206ENST00000468253 MROH2BQ7Z745 1585 aa37.17■■■■□ 3.54
NPHP4-206ENST00000468253 PEG3Q9GZU2 1588 aa37.06■■■■□ 3.52
NPHP4-206ENST00000468253 HMGXB3Q12766 1538 aa36.97■■■■□ 3.51
NPHP4-206ENST00000468253 BAZ1BQ9UIG0 1483 aaKnown RBP36.89■■■■□ 3.5
NPHP4-206ENST00000468253 RSF1Q96T23 1441 aaPredicted RBP36.87■■■■□ 3.49
NPHP4-206ENST00000468253 WIZO95785 1651 aa36.67■■■■□ 3.46
NPHP4-206ENST00000468253 TOP2AP11388 1531 aaKnown RBP36.36■■■■□ 3.41
NPHP4-206ENST00000468253 CADPSQ9ULU8 1353 aa36.23■■■■□ 3.39
NPHP4-206ENST00000468253 NESP48681 1621 aa36.19■■■■□ 3.38
NPHP4-206ENST00000468253 LAMC3Q9Y6N6 1575 aa36.15■■■■□ 3.38
NPHP4-206ENST00000468253 ERCC6Q03468 1493 aa36.06■■■■□ 3.36
NPHP4-206ENST00000468253 PDS5BQ9NTI5 1447 aa36.05■■■■□ 3.36
NPHP4-206ENST00000468253 CCDC88BA6NC98 1476 aa36.03■■■■□ 3.36
NPHP4-206ENST00000468253 SUPT5HO00267 1087 aaKnown RBP36.01■■■■□ 3.36
NPHP4-206ENST00000468253 CFTRP13569 1480 aa35.98■■■■□ 3.35
NPHP4-206ENST00000468253 CUX2O14529 1486 aa35.71■■■■□ 3.31
NPHP4-206ENST00000468253 FANCD2Q9BXW9 1451 aa35.69■■■■□ 3.3
NPHP4-206ENST00000468253 CEP164Q9UPV0 1460 aa35.61■■■■□ 3.29
NPHP4-206ENST00000468253 KIF21AQ7Z4S6 1674 aa35.61■■■■□ 3.29
NPHP4-206ENST00000468253 MRC2Q9UBG0 1479 aa35.56■■■■□ 3.28
NPHP4-206ENST00000468253 THOC2Q8NI27 1593 aaKnown RBP35.54■■■■□ 3.28
NPHP4-206ENST00000468253 WDR62O43379 1518 aa35.4■■■■□ 3.26
NPHP4-206ENST00000468253 PRDM2Q13029 1718 aa35.37■■■■□ 3.25
NPHP4-206ENST00000468253 URB2Q14146 1524 aaKnown RBP35.29■■■■□ 3.24
NPHP4-206ENST00000468253 ABCC8Q09428 1581 aa35.24■■■■□ 3.23
NPHP4-206ENST00000468253 TOPBP1Q92547 1522 aa35.11■■■■□ 3.21
NPHP4-206ENST00000468253 DNMBPQ6XZF7 1577 aa35.04■■■■□ 3.2
NPHP4-206ENST00000468253 IFT140Q96RY7 1462 aa34.93■■■■□ 3.18
NPHP4-206ENST00000468253 CUX1P39880 1505 aa34.85■■■■□ 3.17
NPHP4-206ENST00000468253 POLA1P09884 1462 aaPredicted RBP34.82■■■■□ 3.16
NPHP4-206ENST00000468253 SOGA1O94964 1423 aa34.79■■■■□ 3.16
NPHP4-206ENST00000468253 WRNQ14191 1432 aaPredicted RBP eCLIP34.74■■■■□ 3.15
NPHP4-206ENST00000468253 FGD5Q6ZNL6 1462 aa34.72■■■■□ 3.15
NPHP4-206ENST00000468253 ZNF608Q9ULD9 1512 aaPredicted RBP34.69■■■■□ 3.14
NPHP4-206ENST00000468253 DNAJC5Q9H3Z4 198 aa34.68■■■■□ 3.14
NPHP4-206ENST00000468253 RAD54L2Q9Y4B4 1467 aa34.67■■■■□ 3.14
NPHP4-206ENST00000468253 TARBP1Q13395 1621 aaKnown RBP34.66■■■■□ 3.14
NPHP4-206ENST00000468253 AQRO60306 1485 aaKnown RBP eCLIP34.57■■■■□ 3.127e-9■■■■■ 27.6
NPHP4-206ENST00000468253 TOP2BQ02880 1626 aa34.56■■■■□ 3.12
NPHP4-206ENST00000468253 TDRD9Q8NDG6 1382 aaKnown RBP34.55■■■■□ 3.12
NPHP4-206ENST00000468253 SYNJ1O43426 1573 aa34.49■■■■□ 3.11
NPHP4-206ENST00000468253 BIVM-ERCC5R4GMW8 1640 aa34.48■■■■□ 3.11
NPHP4-206ENST00000468253 ABCA10Q8WWZ4 1543 aa34.46■■■■□ 3.11
NPHP4-206ENST00000468253 WDR97A6NE52 1622 aa34.45■■■■□ 3.11
NPHP4-206ENST00000468253 EIF4G3O43432 1585 aaKnown RBP34.43■■■■□ 3.1
NPHP4-206ENST00000468253 OSCARQ8IYS5 282 aa34.41■■■■□ 3.1
NPHP4-206ENST00000468253 GRIN2BQ13224 1484 aa34.33■■■■□ 3.09
NPHP4-206ENST00000468253 GAPVD1Q14C86 1478 aa34.33■■■■□ 3.09
NPHP4-206ENST00000468253 MAGI1Q96QZ7 1491 aaPredicted RBP34.2■■■■□ 3.07
NPHP4-206ENST00000468253 FBLN2P98095 1184 aa34.18■■■■□ 3.06
NPHP4-206ENST00000468253 SNAPC4Q5SXM2 1469 aa34.17■■■■□ 3.06
NPHP4-206ENST00000468253 CHMP7Q8WUX9 453 aaPredicted RBP34.17■■■■□ 3.06
NPHP4-206ENST00000468253 ABCA5Q8WWZ7 1642 aa34.17■■■■□ 3.06
NPHP4-206ENST00000468253 TRIM41Q8WV44 630 aa34.08■■■■□ 3.05
NPHP4-206ENST00000468253 SYNJ2O15056 1496 aa34.07■■■■□ 3.05
NPHP4-206ENST00000468253 KIF27Q86VH2 1401 aa34.05■■■■□ 3.04
NPHP4-206ENST00000468253 ERICH3Q5RHP9 1530 aa34.04■■■■□ 3.04
NPHP4-206ENST00000468253 PBRM1Q86U86 1689 aa33.98■■■■□ 3.03
NPHP4-206ENST00000468253 IGF1RP08069 1367 aa33.98■■■■□ 3.03
NPHP4-206ENST00000468253 FHAD1B1AJZ9 1412 aa33.97■■■■□ 3.03
NPHP4-206ENST00000468253 CHD1O14646 1710 aa33.9■■■■□ 3.02
NPHP4-206ENST00000468253 ADAMTS12P58397 1594 aa33.83■■■■□ 3.01
NPHP4-206ENST00000468253 GRIN2AQ12879 1464 aa33.82■■■■□ 3.01
NPHP4-206ENST00000468253 CARMIL1Q5VZK9 1371 aa33.74■■■□□ 2.99
NPHP4-206ENST00000468253 NUP160Q12769 1436 aa33.73■■■□□ 2.99
NPHP4-206ENST00000468253 CHIC1Q5VXU3 224 aa33.73■■■□□ 2.99
NPHP4-206ENST00000468253 CLASP1Q7Z460 1538 aa33.7■■■□□ 2.99
NPHP4-206ENST00000468253 RUSC2Q8N2Y8 1516 aa33.66■■■□□ 2.98
NPHP4-206ENST00000468253 CUL7Q14999 1698 aa33.63■■■□□ 2.97
NPHP4-206ENST00000468253 ARHGEF11O15085 1522 aa33.62■■■□□ 2.97
NPHP4-206ENST00000468253 CEP170Q5SW79 1584 aa33.56■■■□□ 2.96
NPHP4-206ENST00000468253 RIMBP3CA6NJZ7 1639 aa33.53■■■□□ 2.96
NPHP4-206ENST00000468253 RIMBP3BA6NNM3 1639 aa33.53■■■□□ 2.96
NPHP4-206ENST00000468253 RIMBP3Q9UFD9 1639 aa33.53■■■□□ 2.96
NPHP4-206ENST00000468253 JPH4Q96JJ6 628 aa33.53■■■□□ 2.96
NPHP4-206ENST00000468253 CSRNP3Q8WYN3 585 aa33.51■■■□□ 2.95
NPHP4-206ENST00000468253 RAPGEF2Q9Y4G8 1499 aa33.49■■■□□ 2.95
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms