RNA–Protein interactions for RNA: ENST00000468040.2

SNIP1-202, Transcript of Smad nuclear interacting protein 1, humanhuman

TSL 5

Gene SNIP1, Length 931 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNIP1-202ENST00000468040 NISCHQ9Y2I1 1504 aa36.07■■■■□ 3.36
SNIP1-202ENST00000468040 CCDC180Q9P1Z9 1646 aa31.89■■■□□ 2.7
SNIP1-202ENST00000468040 ABCC9O60706 1549 aa30.71■■■□□ 2.51
SNIP1-202ENST00000468040 ZCCHC6Q5VYS8 1495 aaKnown RBP30.15■■■□□ 2.42
SNIP1-202ENST00000468040 DCAF8L2P0C7V8 631 aa29.91■■■□□ 2.38
SNIP1-202ENST00000468040 DCAF1Q9Y4B6 1507 aa29.9■■■□□ 2.38
SNIP1-202ENST00000468040 NACADO15069 1562 aa29.87■■■□□ 2.37
SNIP1-202ENST00000468040 MYO15BQ96JP2 1530 aa29.86■■■□□ 2.37
SNIP1-202ENST00000468040 RB1CC1Q8TDY2 1594 aa29.79■■■□□ 2.36
SNIP1-202ENST00000468040 SCRIBQ14160 1630 aa29.1■■■□□ 2.25
SNIP1-202ENST00000468040 UNC13AQ9UPW8 1703 aa29.07■■■□□ 2.24
SNIP1-202ENST00000468040 BICRAQ9NZM4 1560 aa28.82■■■□□ 2.2
SNIP1-202ENST00000468040 PABPN1Q86U42 306 aaKnown RBP eCLIP28.75■■■□□ 2.19
SNIP1-202ENST00000468040 SHROOM4Q9ULL8 1493 aa28.72■■■□□ 2.19
SNIP1-202ENST00000468040 EIF4G1Q04637 1599 aaKnown RBP28.05■■■□□ 2.08
SNIP1-202ENST00000468040 CECR2Q9BXF3 1484 aa28.01■■■□□ 2.07
SNIP1-202ENST00000468040 BAZ1AQ9NRL2 1556 aaPredicted RBP27.95■■■□□ 2.07
SNIP1-202ENST00000468040 SMARCA4P51532 1647 aa27.89■■■□□ 2.05
SNIP1-202ENST00000468040 CC2D2AQ9P2K1 1620 aa27.81■■■□□ 2.04
SNIP1-202ENST00000468040 MROH2BQ7Z745 1585 aa27.78■■■□□ 2.04
SNIP1-202ENST00000468040 DNAJC5BQ9UF47 199 aa27.7■■■□□ 2.02
SNIP1-202ENST00000468040 RSF1Q96T23 1441 aaPredicted RBP27.65■■■□□ 2.02
SNIP1-202ENST00000468040 SMARCA2P51531 1590 aa27.64■■■□□ 2.01
SNIP1-202ENST00000468040 PEG3Q9GZU2 1588 aa27.63■■■□□ 2.01
SNIP1-202ENST00000468040 ATAD2BQ9ULI0 1458 aa27.62■■■□□ 2.01
SNIP1-202ENST00000468040 NCAPD3P42695 1498 aa27.54■■■□□ 2
SNIP1-202ENST00000468040 WIZO95785 1651 aa27.5■■□□□ 1.99
SNIP1-202ENST00000468040 HMGXB3Q12766 1538 aa27.46■■□□□ 1.99
SNIP1-202ENST00000468040 BAZ1BQ9UIG0 1483 aaKnown RBP27.44■■□□□ 1.98
SNIP1-202ENST00000468040 TOP2AP11388 1531 aaKnown RBP27.28■■□□□ 1.96
SNIP1-202ENST00000468040 SUPT5HO00267 1087 aaKnown RBP27.27■■□□□ 1.96
SNIP1-202ENST00000468040 CCDC88BA6NC98 1476 aa26.93■■□□□ 1.9
SNIP1-202ENST00000468040 CADPSQ9ULU8 1353 aa26.76■■□□□ 1.87
SNIP1-202ENST00000468040 LAMC3Q9Y6N6 1575 aa26.75■■□□□ 1.87
SNIP1-202ENST00000468040 CFTRP13569 1480 aa26.7■■□□□ 1.87
SNIP1-202ENST00000468040 NESP48681 1621 aa26.69■■□□□ 1.86
SNIP1-202ENST00000468040 PDS5BQ9NTI5 1447 aa26.56■■□□□ 1.84
SNIP1-202ENST00000468040 PRDM2Q13029 1718 aa26.55■■□□□ 1.84
SNIP1-202ENST00000468040 ERCC6Q03468 1493 aa26.47■■□□□ 1.83
SNIP1-202ENST00000468040 FANCD2Q9BXW9 1451 aa26.45■■□□□ 1.82
SNIP1-202ENST00000468040 KIF21AQ7Z4S6 1674 aa26.41■■□□□ 1.82
SNIP1-202ENST00000468040 CEP164Q9UPV0 1460 aa26.4■■□□□ 1.82
SNIP1-202ENST00000468040 MRC2Q9UBG0 1479 aa26.25■■□□□ 1.79
SNIP1-202ENST00000468040 THOC2Q8NI27 1593 aaKnown RBP26.22■■□□□ 1.79
SNIP1-202ENST00000468040 WDR62O43379 1518 aa26.15■■□□□ 1.78
SNIP1-202ENST00000468040 ABCC8Q09428 1581 aa26.15■■□□□ 1.78
SNIP1-202ENST00000468040 URB2Q14146 1524 aaKnown RBP26.14■■□□□ 1.77
SNIP1-202ENST00000468040 DNMBPQ6XZF7 1577 aa26.11■■□□□ 1.77
SNIP1-202ENST00000468040 TOPBP1Q92547 1522 aa26.08■■□□□ 1.77
SNIP1-202ENST00000468040 WRNQ14191 1432 aaPredicted RBP eCLIP26.07■■□□□ 1.76
SNIP1-202ENST00000468040 CUX1P39880 1505 aa26.05■■□□□ 1.76
SNIP1-202ENST00000468040 CUX2O14529 1486 aa26.02■■□□□ 1.76
SNIP1-202ENST00000468040 TOP2BQ02880 1626 aa25.96■■□□□ 1.75
SNIP1-202ENST00000468040 BIVM-ERCC5R4GMW8 1640 aa25.96■■□□□ 1.75
SNIP1-202ENST00000468040 SYNJ1O43426 1573 aa25.96■■□□□ 1.75
SNIP1-202ENST00000468040 FGD5Q6ZNL6 1462 aa25.9■■□□□ 1.74
SNIP1-202ENST00000468040 POLA1P09884 1462 aaPredicted RBP25.89■■□□□ 1.73
SNIP1-202ENST00000468040 IFT140Q96RY7 1462 aa25.82■■□□□ 1.72
SNIP1-202ENST00000468040 SOGA1O94964 1423 aa25.79■■□□□ 1.72
SNIP1-202ENST00000468040 TRIM41Q8WV44 630 aa25.78■■□□□ 1.72
SNIP1-202ENST00000468040 TARBP1Q13395 1621 aaKnown RBP25.75■■□□□ 1.71
SNIP1-202ENST00000468040 RAD54L2Q9Y4B4 1467 aa25.74■■□□□ 1.71
SNIP1-202ENST00000468040 CHIC1Q5VXU3 224 aa25.72■■□□□ 1.71
SNIP1-202ENST00000468040 ABCA10Q8WWZ4 1543 aa25.68■■□□□ 1.7
SNIP1-202ENST00000468040 WDR97A6NE52 1622 aa25.66■■□□□ 1.7
SNIP1-202ENST00000468040 ZNF608Q9ULD9 1512 aaPredicted RBP25.62■■□□□ 1.69
SNIP1-202ENST00000468040 EIF4G3O43432 1585 aaKnown RBP25.57■■□□□ 1.68
SNIP1-202ENST00000468040 TDRD9Q8NDG6 1382 aaKnown RBP25.56■■□□□ 1.68
SNIP1-202ENST00000468040 AQRO60306 1485 aaKnown RBP eCLIP25.53■■□□□ 1.68
SNIP1-202ENST00000468040 ABCA5Q8WWZ7 1642 aa25.53■■□□□ 1.68
SNIP1-202ENST00000468040 KIF27Q86VH2 1401 aa25.51■■□□□ 1.67
SNIP1-202ENST00000468040 GAPVD1Q14C86 1478 aa25.51■■□□□ 1.67
SNIP1-202ENST00000468040 GRIN2BQ13224 1484 aa25.45■■□□□ 1.66
SNIP1-202ENST00000468040 PBRM1Q86U86 1689 aa25.42■■□□□ 1.66
SNIP1-202ENST00000468040 ERICH3Q5RHP9 1530 aa25.39■■□□□ 1.66
SNIP1-202ENST00000468040 EEA1Q15075 1411 aa25.36■■□□□ 1.65
SNIP1-202ENST00000468040 MAGI1Q96QZ7 1491 aaPredicted RBP25.34■■□□□ 1.65
SNIP1-202ENST00000468040 RUSC2Q8N2Y8 1516 aa25.34■■□□□ 1.65
SNIP1-202ENST00000468040 SNAPC4Q5SXM2 1469 aa25.34■■□□□ 1.65
SNIP1-202ENST00000468040 IGF1RP08069 1367 aa25.31■■□□□ 1.64
SNIP1-202ENST00000468040 CUL7Q14999 1698 aa25.26■■□□□ 1.63
SNIP1-202ENST00000468040 ADAMTS12P58397 1594 aa25.26■■□□□ 1.63
SNIP1-202ENST00000468040 FHAD1B1AJZ9 1412 aa25.24■■□□□ 1.63
SNIP1-202ENST00000468040 SYNJ2O15056 1496 aa25.23■■□□□ 1.63
SNIP1-202ENST00000468040 CSRNP3Q8WYN3 585 aa25.2■■□□□ 1.62
SNIP1-202ENST00000468040 CARMIL1Q5VZK9 1371 aa25.18■■□□□ 1.62
SNIP1-202ENST00000468040 FAM9AQ8IZU1 332 aaPredicted RBP25.18■■□□□ 1.62
SNIP1-202ENST00000468040 CHMP7Q8WUX9 453 aaPredicted RBP25.17■■□□□ 1.62
SNIP1-202ENST00000468040 CHD1O14646 1710 aa25.15■■□□□ 1.62
SNIP1-202ENST00000468040 FBLN2P98095 1184 aa25.14■■□□□ 1.62
SNIP1-202ENST00000468040 GRIN2AQ12879 1464 aa25.12■■□□□ 1.61
SNIP1-202ENST00000468040 PRXQ9BXM0 1461 aa25.12■■□□□ 1.61
SNIP1-202ENST00000468040 RAPGEF2Q9Y4G8 1499 aa25.1■■□□□ 1.61
SNIP1-202ENST00000468040 KIF21BO75037 1637 aa25.03■■□□□ 1.6
SNIP1-202ENST00000468040 OSCARQ8IYS5 282 aa25.01■■□□□ 1.59
SNIP1-202ENST00000468040 NUP160Q12769 1436 aa24.99■■□□□ 1.59
SNIP1-202ENST00000468040 CEP170Q5SW79 1584 aa24.95■■□□□ 1.58
SNIP1-202ENST00000468040 GOLGA3Q08378 1498 aa24.92■■□□□ 1.58
SNIP1-202ENST00000468040 CLASP1Q7Z460 1538 aa24.89■■□□□ 1.57
SNIP1-202ENST00000468040 KIAA0586Q9BVV6 1533 aa24.86■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms