RNA–Protein interactions for RNA: ENST00000467854.1

CNTNAP3B-204, Transcript of contactin associated protein like 3B, humanhuman

TSL 3

Gene CNTNAP3B, Length 1,238 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNTNAP3B-204ENST00000467854 NISCHQ9Y2I1 1504 aa53.52■■■■■ 6.16
CNTNAP3B-204ENST00000467854 CCDC180Q9P1Z9 1646 aa47.38■■■■■ 5.18
CNTNAP3B-204ENST00000467854 ABCC9O60706 1549 aa45.73■■■■■ 4.91
CNTNAP3B-204ENST00000467854 ZCCHC6Q5VYS8 1495 aaKnown RBP44.75■■■■■ 4.75
CNTNAP3B-204ENST00000467854 DCAF8L2P0C7V8 631 aa44.39■■■■■ 4.7
CNTNAP3B-204ENST00000467854 NACADO15069 1562 aa44.33■■■■■ 4.69
CNTNAP3B-204ENST00000467854 DCAF1Q9Y4B6 1507 aa44.29■■■■■ 4.68
CNTNAP3B-204ENST00000467854 RB1CC1Q8TDY2 1594 aa44.26■■■■■ 4.68
CNTNAP3B-204ENST00000467854 MYO15BQ96JP2 1530 aa44.24■■■■■ 4.67
CNTNAP3B-204ENST00000467854 UNC13AQ9UPW8 1703 aa43.35■■■■■ 4.53
CNTNAP3B-204ENST00000467854 SCRIBQ14160 1630 aa43.31■■■■■ 4.52
CNTNAP3B-204ENST00000467854 BICRAQ9NZM4 1560 aa42.91■■■■■ 4.46
CNTNAP3B-204ENST00000467854 PABPN1Q86U42 306 aaKnown RBP eCLIP42.78■■■■■ 4.44
CNTNAP3B-204ENST00000467854 SHROOM4Q9ULL8 1493 aa42.68■■■■■ 4.42
CNTNAP3B-204ENST00000467854 EIF4G1Q04637 1599 aaKnown RBP41.73■■■■■ 4.27
CNTNAP3B-204ENST00000467854 CECR2Q9BXF3 1484 aa41.63■■■■■ 4.25
CNTNAP3B-204ENST00000467854 DNAJC5BQ9UF47 199 aa41.53■■■■■ 4.24
CNTNAP3B-204ENST00000467854 BAZ1AQ9NRL2 1556 aaPredicted RBP41.46■■■■■ 4.23
CNTNAP3B-204ENST00000467854 SMARCA4P51532 1647 aa41.45■■■■■ 4.23
CNTNAP3B-204ENST00000467854 CC2D2AQ9P2K1 1620 aa41.41■■■■■ 4.22
CNTNAP3B-204ENST00000467854 MROH2BQ7Z745 1585 aa41.29■■■■■ 4.2
CNTNAP3B-204ENST00000467854 SMARCA2P51531 1590 aa41.01■■■■■ 4.16
CNTNAP3B-204ENST00000467854 ATAD2BQ9ULI0 1458 aa41.01■■■■■ 4.16
CNTNAP3B-204ENST00000467854 PEG3Q9GZU2 1588 aa41■■■■■ 4.15
CNTNAP3B-204ENST00000467854 RSF1Q96T23 1441 aaPredicted RBP40.99■■■■■ 4.15
CNTNAP3B-204ENST00000467854 WIZO95785 1651 aa40.91■■■■■ 4.14
CNTNAP3B-204ENST00000467854 NCAPD3P42695 1498 aa40.86■■■■■ 4.13
CNTNAP3B-204ENST00000467854 HMGXB3Q12766 1538 aa40.79■■■■■ 4.12
CNTNAP3B-204ENST00000467854 BAZ1BQ9UIG0 1483 aaKnown RBP40.74■■■■■ 4.11
CNTNAP3B-204ENST00000467854 TOP2AP11388 1531 aaKnown RBP40.5■■■■■ 4.07
CNTNAP3B-204ENST00000467854 SUPT5HO00267 1087 aaKnown RBP40.39■■■■■ 4.06
CNTNAP3B-204ENST00000467854 CCDC88BA6NC98 1476 aa39.96■■■■□ 3.99
CNTNAP3B-204ENST00000467854 NESP48681 1621 aa39.76■■■■□ 3.96
CNTNAP3B-204ENST00000467854 LAMC3Q9Y6N6 1575 aa39.75■■■■□ 3.95
CNTNAP3B-204ENST00000467854 CADPSQ9ULU8 1353 aa39.7■■■■□ 3.95
CNTNAP3B-204ENST00000467854 CFTRP13569 1480 aa39.62■■■■□ 3.93
CNTNAP3B-204ENST00000467854 PRDM2Q13029 1718 aa39.5■■■■□ 3.91
CNTNAP3B-204ENST00000467854 PDS5BQ9NTI5 1447 aa39.4■■■■□ 3.9
CNTNAP3B-204ENST00000467854 KIF21AQ7Z4S6 1674 aa39.38■■■■□ 3.89
CNTNAP3B-204ENST00000467854 ERCC6Q03468 1493 aa39.37■■■■□ 3.89
CNTNAP3B-204ENST00000467854 FANCD2Q9BXW9 1451 aa39.3■■■■□ 3.88
CNTNAP3B-204ENST00000467854 CEP164Q9UPV0 1460 aa39.21■■■■□ 3.87
CNTNAP3B-204ENST00000467854 THOC2Q8NI27 1593 aaKnown RBP39.08■■■■□ 3.85
CNTNAP3B-204ENST00000467854 MRC2Q9UBG0 1479 aa39.02■■■■□ 3.84
CNTNAP3B-204ENST00000467854 WDR62O43379 1518 aa38.89■■■■□ 3.82
CNTNAP3B-204ENST00000467854 URB2Q14146 1524 aaKnown RBP38.89■■■■□ 3.82
CNTNAP3B-204ENST00000467854 DNMBPQ6XZF7 1577 aa38.78■■■■□ 3.8
CNTNAP3B-204ENST00000467854 ABCC8Q09428 1581 aa38.77■■■■□ 3.8
CNTNAP3B-204ENST00000467854 TOPBP1Q92547 1522 aa38.75■■■■□ 3.79
CNTNAP3B-204ENST00000467854 CUX2O14529 1486 aa38.71■■■■□ 3.79
CNTNAP3B-204ENST00000467854 CUX1P39880 1505 aa38.7■■■■□ 3.79
CNTNAP3B-204ENST00000467854 WRNQ14191 1432 aaPredicted RBP eCLIP38.64■■■■□ 3.78
CNTNAP3B-204ENST00000467854 SYNJ1O43426 1573 aa38.59■■■■□ 3.77
CNTNAP3B-204ENST00000467854 BIVM-ERCC5R4GMW8 1640 aa38.56■■■■□ 3.76
CNTNAP3B-204ENST00000467854 TOP2BQ02880 1626 aa38.53■■■■□ 3.76
CNTNAP3B-204ENST00000467854 FGD5Q6ZNL6 1462 aa38.47■■■■□ 3.75
CNTNAP3B-204ENST00000467854 POLA1P09884 1462 aaPredicted RBP38.46■■■■□ 3.75
CNTNAP3B-204ENST00000467854 IFT140Q96RY7 1462 aa38.34■■■■□ 3.73
CNTNAP3B-204ENST00000467854 TARBP1Q13395 1621 aaKnown RBP38.3■■■■□ 3.72
CNTNAP3B-204ENST00000467854 RAD54L2Q9Y4B4 1467 aa38.28■■■■□ 3.72
CNTNAP3B-204ENST00000467854 SOGA1O94964 1423 aa38.26■■■■□ 3.72
CNTNAP3B-204ENST00000467854 WDR97A6NE52 1622 aa38.2■■■■□ 3.7
CNTNAP3B-204ENST00000467854 ZNF608Q9ULD9 1512 aaPredicted RBP38.13■■■■□ 3.69
CNTNAP3B-204ENST00000467854 ABCA10Q8WWZ4 1543 aa38.1■■■■□ 3.69
CNTNAP3B-204ENST00000467854 TRIM41Q8WV44 630 aa38.09■■■■□ 3.69
CNTNAP3B-204ENST00000467854 EIF4G3O43432 1585 aaKnown RBP38.07■■■■□ 3.69
CNTNAP3B-204ENST00000467854 CHIC1Q5VXU3 224 aa38.03■■■■□ 3.68
CNTNAP3B-204ENST00000467854 TDRD9Q8NDG6 1382 aaKnown RBP37.98■■■■□ 3.67
CNTNAP3B-204ENST00000467854 AQRO60306 1485 aaKnown RBP eCLIP37.96■■■■□ 3.67
CNTNAP3B-204ENST00000467854 ABCA5Q8WWZ7 1642 aa37.96■■■■□ 3.67
CNTNAP3B-204ENST00000467854 GAPVD1Q14C86 1478 aa37.86■■■■□ 3.65
CNTNAP3B-204ENST00000467854 PBRM1Q86U86 1689 aa37.85■■■■□ 3.65
CNTNAP3B-204ENST00000467854 DNAJC5Q9H3Z4 198 aa37.79■■■■□ 3.64
CNTNAP3B-204ENST00000467854 KIF27Q86VH2 1401 aa37.78■■■■□ 3.64
CNTNAP3B-204ENST00000467854 GRIN2BQ13224 1484 aa37.77■■■■□ 3.64
CNTNAP3B-204ENST00000467854 SNAPC4Q5SXM2 1469 aa37.68■■■■□ 3.62
CNTNAP3B-204ENST00000467854 ERICH3Q5RHP9 1530 aa37.66■■■■□ 3.62
CNTNAP3B-204ENST00000467854 RUSC2Q8N2Y8 1516 aa37.66■■■■□ 3.62
CNTNAP3B-204ENST00000467854 MAGI1Q96QZ7 1491 aaPredicted RBP37.62■■■■□ 3.61
CNTNAP3B-204ENST00000467854 ADAMTS12P58397 1594 aa37.57■■■■□ 3.6
CNTNAP3B-204ENST00000467854 IGF1RP08069 1367 aa37.5■■■■□ 3.59
CNTNAP3B-204ENST00000467854 CUL7Q14999 1698 aa37.49■■■■□ 3.59
CNTNAP3B-204ENST00000467854 CHD1O14646 1710 aa37.49■■■■□ 3.59
CNTNAP3B-204ENST00000467854 SYNJ2O15056 1496 aa37.46■■■■□ 3.59
CNTNAP3B-204ENST00000467854 EEA1Q15075 1411 aa37.44■■■■□ 3.58
CNTNAP3B-204ENST00000467854 FHAD1B1AJZ9 1412 aa37.44■■■■□ 3.58
CNTNAP3B-204ENST00000467854 FBLN2P98095 1184 aa37.35■■■■□ 3.57
CNTNAP3B-204ENST00000467854 FAM9AQ8IZU1 332 aaPredicted RBP37.33■■■■□ 3.57
CNTNAP3B-204ENST00000467854 CHMP7Q8WUX9 453 aaPredicted RBP37.33■■■■□ 3.57
CNTNAP3B-204ENST00000467854 GRIN2AQ12879 1464 aa37.32■■■■□ 3.56
CNTNAP3B-204ENST00000467854 CARMIL1Q5VZK9 1371 aa37.31■■■■□ 3.56
CNTNAP3B-204ENST00000467854 CSRNP3Q8WYN3 585 aa37.26■■■■□ 3.56
CNTNAP3B-204ENST00000467854 PRXQ9BXM0 1461 aa37.21■■■■□ 3.55
CNTNAP3B-204ENST00000467854 RAPGEF2Q9Y4G8 1499 aa37.19■■■■□ 3.54
CNTNAP3B-204ENST00000467854 CEP170Q5SW79 1584 aa37.14■■■■□ 3.54
CNTNAP3B-204ENST00000467854 OSCARQ8IYS5 282 aa37.12■■■■□ 3.53
CNTNAP3B-204ENST00000467854 KIF21BO75037 1637 aa37.1■■■■□ 3.53
CNTNAP3B-204ENST00000467854 NUP160Q12769 1436 aa37.1■■■■□ 3.53
CNTNAP3B-204ENST00000467854 CLASP1Q7Z460 1538 aa37.05■■■■□ 3.52
CNTNAP3B-204ENST00000467854 CTTNBP2Q8WZ74 1663 aa36.92■■■■□ 3.5
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms