RNA–Protein interactions for RNA: ENST00000467318.5

DDX56-208, Transcript of DEAD-box helicase 56, humanhuman

TSL 5

Gene DDX56, Length 1,665 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-208ENST00000467318 NISCHQ9Y2I1 1504 aa34.77■■■■□ 3.16
DDX56-208ENST00000467318 CCDC180Q9P1Z9 1646 aa30.66■■■□□ 2.5
DDX56-208ENST00000467318 ABCC9O60706 1549 aa29.61■■■□□ 2.33
DDX56-208ENST00000467318 ZCCHC6Q5VYS8 1495 aaKnown RBP29.06■■■□□ 2.24
DDX56-208ENST00000467318 DCAF8L2P0C7V8 631 aa28.88■■■□□ 2.21
DDX56-208ENST00000467318 DCAF1Q9Y4B6 1507 aa28.82■■■□□ 2.2
DDX56-208ENST00000467318 MYO15BQ96JP2 1530 aa28.77■■■□□ 2.2
DDX56-208ENST00000467318 NACADO15069 1562 aa28.75■■■□□ 2.19
DDX56-208ENST00000467318 RB1CC1Q8TDY2 1594 aa28.65■■■□□ 2.18
DDX56-208ENST00000467318 SCRIBQ14160 1630 aa28.02■■■□□ 2.08
DDX56-208ENST00000467318 UNC13AQ9UPW8 1703 aa27.99■■■□□ 2.07
DDX56-208ENST00000467318 SHROOM4Q9ULL8 1493 aa27.8■■■□□ 2.04
DDX56-208ENST00000467318 PABPN1Q86U42 306 aaKnown RBP eCLIP27.79■■■□□ 2.046e-7■■■■□ 21.2
DDX56-208ENST00000467318 BICRAQ9NZM4 1560 aa27.75■■■□□ 2.03
DDX56-208ENST00000467318 CECR2Q9BXF3 1484 aa27.02■■□□□ 1.92
DDX56-208ENST00000467318 EIF4G1Q04637 1599 aaKnown RBP26.97■■□□□ 1.91
DDX56-208ENST00000467318 BAZ1AQ9NRL2 1556 aaPredicted RBP26.92■■□□□ 1.9
DDX56-208ENST00000467318 DNAJC5BQ9UF47 199 aa26.86■■□□□ 1.89
DDX56-208ENST00000467318 SMARCA4P51532 1647 aa26.85■■□□□ 1.89
DDX56-208ENST00000467318 MROH2BQ7Z745 1585 aa26.78■■□□□ 1.88
DDX56-208ENST00000467318 CC2D2AQ9P2K1 1620 aa26.76■■□□□ 1.87
DDX56-208ENST00000467318 RSF1Q96T23 1441 aaPredicted RBP26.68■■□□□ 1.86
DDX56-208ENST00000467318 SMARCA2P51531 1590 aa26.61■■□□□ 1.85
DDX56-208ENST00000467318 PEG3Q9GZU2 1588 aa26.61■■□□□ 1.85
DDX56-208ENST00000467318 ATAD2BQ9ULI0 1458 aa26.6■■□□□ 1.85
DDX56-208ENST00000467318 NCAPD3P42695 1498 aa26.54■■□□□ 1.84
DDX56-208ENST00000467318 WIZO95785 1651 aa26.5■■□□□ 1.83
DDX56-208ENST00000467318 HMGXB3Q12766 1538 aa26.43■■□□□ 1.82
DDX56-208ENST00000467318 BAZ1BQ9UIG0 1483 aaKnown RBP26.41■■□□□ 1.82
DDX56-208ENST00000467318 SUPT5HO00267 1087 aaKnown RBP26.4■■□□□ 1.82
DDX56-208ENST00000467318 TOP2AP11388 1531 aaKnown RBP26.27■■□□□ 1.8
DDX56-208ENST00000467318 CCDC88BA6NC98 1476 aa25.97■■□□□ 1.75
DDX56-208ENST00000467318 CADPSQ9ULU8 1353 aa25.8■■□□□ 1.72
DDX56-208ENST00000467318 NESP48681 1621 aa25.78■■□□□ 1.72
DDX56-208ENST00000467318 CFTRP13569 1480 aa25.74■■□□□ 1.71
DDX56-208ENST00000467318 LAMC3Q9Y6N6 1575 aa25.74■■□□□ 1.71
DDX56-208ENST00000467318 PDS5BQ9NTI5 1447 aa25.58■■□□□ 1.69
DDX56-208ENST00000467318 PRDM2Q13029 1718 aa25.52■■□□□ 1.68
DDX56-208ENST00000467318 FANCD2Q9BXW9 1451 aa25.47■■□□□ 1.67
DDX56-208ENST00000467318 ERCC6Q03468 1493 aa25.44■■□□□ 1.66
DDX56-208ENST00000467318 KIF21AQ7Z4S6 1674 aa25.43■■□□□ 1.66
DDX56-208ENST00000467318 CEP164Q9UPV0 1460 aa25.4■■□□□ 1.66
DDX56-208ENST00000467318 MRC2Q9UBG0 1479 aa25.24■■□□□ 1.63
DDX56-208ENST00000467318 THOC2Q8NI27 1593 aaKnown RBP25.21■■□□□ 1.63
DDX56-208ENST00000467318 ABCC8Q09428 1581 aa25.2■■□□□ 1.62
DDX56-208ENST00000467318 URB2Q14146 1524 aaKnown RBP25.16■■□□□ 1.62
DDX56-208ENST00000467318 WRNQ14191 1432 aaPredicted RBP eCLIP25.16■■□□□ 1.62
DDX56-208ENST00000467318 WDR62O43379 1518 aa25.14■■□□□ 1.61
DDX56-208ENST00000467318 DNMBPQ6XZF7 1577 aa25.12■■□□□ 1.61
DDX56-208ENST00000467318 TOPBP1Q92547 1522 aa25.11■■□□□ 1.61
DDX56-208ENST00000467318 CUX1P39880 1505 aa25.09■■□□□ 1.61
DDX56-208ENST00000467318 TOP2BQ02880 1626 aa25.02■■□□□ 1.6
DDX56-208ENST00000467318 SYNJ1O43426 1573 aa25.01■■□□□ 1.59
DDX56-208ENST00000467318 BIVM-ERCC5R4GMW8 1640 aa25■■□□□ 1.59
DDX56-208ENST00000467318 CUX2O14529 1486 aa25■■□□□ 1.59
DDX56-208ENST00000467318 TRIM41Q8WV44 630 aa24.94■■□□□ 1.58
DDX56-208ENST00000467318 POLA1P09884 1462 aaPredicted RBP24.94■■□□□ 1.58
DDX56-208ENST00000467318 FGD5Q6ZNL6 1462 aa24.94■■□□□ 1.58
DDX56-208ENST00000467318 CHIC1Q5VXU3 224 aa24.94■■□□□ 1.58
DDX56-208ENST00000467318 SOGA1O94964 1423 aa24.87■■□□□ 1.57
DDX56-208ENST00000467318 IFT140Q96RY7 1462 aa24.85■■□□□ 1.57
DDX56-208ENST00000467318 RAD54L2Q9Y4B4 1467 aa24.83■■□□□ 1.57
DDX56-208ENST00000467318 TARBP1Q13395 1621 aaKnown RBP24.78■■□□□ 1.56
DDX56-208ENST00000467318 ABCA10Q8WWZ4 1543 aa24.75■■□□□ 1.55
DDX56-208ENST00000467318 ZNF608Q9ULD9 1512 aaPredicted RBP24.71■■□□□ 1.55
DDX56-208ENST00000467318 WDR97A6NE52 1622 aa24.67■■□□□ 1.54
DDX56-208ENST00000467318 TDRD9Q8NDG6 1382 aaKnown RBP24.65■■□□□ 1.54
DDX56-208ENST00000467318 AQRO60306 1485 aaKnown RBP eCLIP24.62■■□□□ 1.532e-7■■■■□ 22.4
DDX56-208ENST00000467318 KIF27Q86VH2 1401 aa24.61■■□□□ 1.53
DDX56-208ENST00000467318 GAPVD1Q14C86 1478 aa24.58■■□□□ 1.53
DDX56-208ENST00000467318 EIF4G3O43432 1585 aaKnown RBP24.57■■□□□ 1.52
DDX56-208ENST00000467318 ABCA5Q8WWZ7 1642 aa24.56■■□□□ 1.52
DDX56-208ENST00000467318 GRIN2BQ13224 1484 aa24.51■■□□□ 1.51
DDX56-208ENST00000467318 RUSC2Q8N2Y8 1516 aa24.5■■□□□ 1.51
DDX56-208ENST00000467318 EEA1Q15075 1411 aa24.49■■□□□ 1.51
DDX56-208ENST00000467318 ERICH3Q5RHP9 1530 aa24.46■■□□□ 1.51
DDX56-208ENST00000467318 IGF1RP08069 1367 aa24.44■■□□□ 1.5
DDX56-208ENST00000467318 PBRM1Q86U86 1689 aa24.43■■□□□ 1.5
DDX56-208ENST00000467318 MAGI1Q96QZ7 1491 aaPredicted RBP24.4■■□□□ 1.5
DDX56-208ENST00000467318 CSRNP3Q8WYN3 585 aa24.38■■□□□ 1.49
DDX56-208ENST00000467318 SNAPC4Q5SXM2 1469 aa24.38■■□□□ 1.49
DDX56-208ENST00000467318 FAM9AQ8IZU1 332 aaPredicted RBP24.37■■□□□ 1.49
DDX56-208ENST00000467318 FHAD1B1AJZ9 1412 aa24.32■■□□□ 1.48
DDX56-208ENST00000467318 CUL7Q14999 1698 aa24.32■■□□□ 1.48
DDX56-208ENST00000467318 CARMIL1Q5VZK9 1371 aa24.32■■□□□ 1.48
DDX56-208ENST00000467318 SYNJ2O15056 1496 aa24.29■■□□□ 1.48
DDX56-208ENST00000467318 ADAMTS12P58397 1594 aa24.28■■□□□ 1.48
DDX56-208ENST00000467318 CHMP7Q8WUX9 453 aaPredicted RBP24.27■■□□□ 1.48
DDX56-208ENST00000467318 PRXQ9BXM0 1461 aa24.25■■□□□ 1.47
DDX56-208ENST00000467318 FBLN2P98095 1184 aa24.24■■□□□ 1.47
DDX56-208ENST00000467318 RAPGEF2Q9Y4G8 1499 aa24.22■■□□□ 1.47
DDX56-208ENST00000467318 CHD1O14646 1710 aa24.2■■□□□ 1.46
DDX56-208ENST00000467318 GRIN2AQ12879 1464 aa24.18■■□□□ 1.46
DDX56-208ENST00000467318 KIF21BO75037 1637 aa24.13■■□□□ 1.45
DDX56-208ENST00000467318 OSCARQ8IYS5 282 aa24.1■■□□□ 1.45
DDX56-208ENST00000467318 EHMT2Q96KQ7 1210 aa24.1■■□□□ 1.45
DDX56-208ENST00000467318 GOLGA3Q08378 1498 aa24.06■■□□□ 1.44
DDX56-208ENST00000467318 NUP160Q12769 1436 aa24.06■■□□□ 1.44
DDX56-208ENST00000467318 CEP170Q5SW79 1584 aa24.01■■□□□ 1.43
DDX56-208ENST00000467318 UBTFP17480 764 aaKnown RBP23.99■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms