RNA–Protein interactions for RNA: ENST00000466959.1

PDCD11-202, Transcript of programmed cell death 11, humanhuman

TSL 2

Gene PDCD11, Length 500 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDCD11-202ENST00000466959 NISCHQ9Y2I1 1504 aa31.36■■■□□ 2.61
PDCD11-202ENST00000466959 CCDC180Q9P1Z9 1646 aa27.73■■■□□ 2.03
PDCD11-202ENST00000466959 ABCC9O60706 1549 aa27.3■■□□□ 1.96
PDCD11-202ENST00000466959 ZCCHC6Q5VYS8 1495 aaKnown RBP26.24■■□□□ 1.79
PDCD11-202ENST00000466959 DCAF1Q9Y4B6 1507 aa25.99■■□□□ 1.75
PDCD11-202ENST00000466959 DNAJC5BQ9UF47 199 aa25.97■■□□□ 1.75
PDCD11-202ENST00000466959 MYO15BQ96JP2 1530 aa25.92■■□□□ 1.74
PDCD11-202ENST00000466959 NACADO15069 1562 aa25.9■■□□□ 1.74
PDCD11-202ENST00000466959 DCAF8L2P0C7V8 631 aa25.9■■□□□ 1.74
PDCD11-202ENST00000466959 RB1CC1Q8TDY2 1594 aa25.82■■□□□ 1.72
PDCD11-202ENST00000466959 PABPN1Q86U42 306 aaKnown RBP eCLIP25.32■■□□□ 1.64
PDCD11-202ENST00000466959 SCRIBQ14160 1630 aa25.3■■□□□ 1.64
PDCD11-202ENST00000466959 UNC13AQ9UPW8 1703 aa25.29■■□□□ 1.64
PDCD11-202ENST00000466959 SHROOM4Q9ULL8 1493 aa25.02■■□□□ 1.6
PDCD11-202ENST00000466959 BICRAQ9NZM4 1560 aa25.02■■□□□ 1.6
PDCD11-202ENST00000466959 CECR2Q9BXF3 1484 aa24.67■■□□□ 1.54
PDCD11-202ENST00000466959 CC2D2AQ9P2K1 1620 aa24.58■■□□□ 1.53
PDCD11-202ENST00000466959 EIF4G1Q04637 1599 aaKnown RBP24.42■■□□□ 1.5
PDCD11-202ENST00000466959 DNAJC5Q9H3Z4 198 aa24.35■■□□□ 1.49
PDCD11-202ENST00000466959 BAZ1AQ9NRL2 1556 aaPredicted RBP24.29■■□□□ 1.48
PDCD11-202ENST00000466959 SMARCA4P51532 1647 aa24.26■■□□□ 1.47
PDCD11-202ENST00000466959 MROH2BQ7Z745 1585 aa24.17■■□□□ 1.46
PDCD11-202ENST00000466959 RSF1Q96T23 1441 aaPredicted RBP24.06■■□□□ 1.44
PDCD11-202ENST00000466959 PEG3Q9GZU2 1588 aa24.01■■□□□ 1.43
PDCD11-202ENST00000466959 SMARCA2P51531 1590 aa23.99■■□□□ 1.43
PDCD11-202ENST00000466959 WIZO95785 1651 aa23.96■■□□□ 1.43
PDCD11-202ENST00000466959 ATAD2BQ9ULI0 1458 aa23.96■■□□□ 1.43
PDCD11-202ENST00000466959 NCAPD3P42695 1498 aa23.87■■□□□ 1.41
PDCD11-202ENST00000466959 HMGXB3Q12766 1538 aa23.84■■□□□ 1.41
PDCD11-202ENST00000466959 CUX2O14529 1486 aa23.8■■□□□ 1.4
PDCD11-202ENST00000466959 BAZ1BQ9UIG0 1483 aaKnown RBP23.8■■□□□ 1.4
PDCD11-202ENST00000466959 SUPT5HO00267 1087 aaKnown RBP23.78■■□□□ 1.4
PDCD11-202ENST00000466959 TOP2AP11388 1531 aaKnown RBP23.74■■□□□ 1.39
PDCD11-202ENST00000466959 ERCC6Q03468 1493 aa23.71■■□□□ 1.39
PDCD11-202ENST00000466959 CCDC88BA6NC98 1476 aa23.43■■□□□ 1.34
PDCD11-202ENST00000466959 NESP48681 1621 aa23.24■■□□□ 1.31
PDCD11-202ENST00000466959 LAMC3Q9Y6N6 1575 aa23.19■■□□□ 1.3
PDCD11-202ENST00000466959 CADPSQ9ULU8 1353 aa23.18■■□□□ 1.3
PDCD11-202ENST00000466959 CFTRP13569 1480 aa23.17■■□□□ 1.3
PDCD11-202ENST00000466959 PRDM2Q13029 1718 aa23.14■■□□□ 1.3
PDCD11-202ENST00000466959 TRIM41Q8WV44 630 aa23.13■■□□□ 1.29
PDCD11-202ENST00000466959 THOC2Q8NI27 1593 aaKnown RBP23.11■■□□□ 1.29
PDCD11-202ENST00000466959 PDS5BQ9NTI5 1447 aa23.01■■□□□ 1.27
PDCD11-202ENST00000466959 KIF21AQ7Z4S6 1674 aa22.94■■□□□ 1.26
PDCD11-202ENST00000466959 FANCD2Q9BXW9 1451 aa22.93■■□□□ 1.26
PDCD11-202ENST00000466959 CEP164Q9UPV0 1460 aa22.87■■□□□ 1.25
PDCD11-202ENST00000466959 MRC2Q9UBG0 1479 aa22.8■■□□□ 1.24
PDCD11-202ENST00000466959 ABCC8Q09428 1581 aa22.73■■□□□ 1.23
PDCD11-202ENST00000466959 WDR62O43379 1518 aa22.72■■□□□ 1.23
PDCD11-202ENST00000466959 URB2Q14146 1524 aaKnown RBP22.69■■□□□ 1.22
PDCD11-202ENST00000466959 DNMBPQ6XZF7 1577 aa22.68■■□□□ 1.22
PDCD11-202ENST00000466959 WRNQ14191 1432 aaPredicted RBP eCLIP22.67■■□□□ 1.22
PDCD11-202ENST00000466959 CUX1P39880 1505 aa22.67■■□□□ 1.22
PDCD11-202ENST00000466959 TOPBP1Q92547 1522 aa22.64■■□□□ 1.21
PDCD11-202ENST00000466959 OSCARQ8IYS5 282 aa22.64■■□□□ 1.21
PDCD11-202ENST00000466959 BIVM-ERCC5R4GMW8 1640 aa22.64■■□□□ 1.21
PDCD11-202ENST00000466959 SYNJ1O43426 1573 aa22.63■■□□□ 1.21
PDCD11-202ENST00000466959 TOP2BQ02880 1626 aa22.61■■□□□ 1.21
PDCD11-202ENST00000466959 CHIC1Q5VXU3 224 aa22.5■■□□□ 1.19
PDCD11-202ENST00000466959 FGD5Q6ZNL6 1462 aa22.49■■□□□ 1.19
PDCD11-202ENST00000466959 POLA1P09884 1462 aaPredicted RBP22.47■■□□□ 1.19
PDCD11-202ENST00000466959 TARBP1Q13395 1621 aaKnown RBP22.38■■□□□ 1.17
PDCD11-202ENST00000466959 SOGA1O94964 1423 aa22.37■■□□□ 1.17
PDCD11-202ENST00000466959 IFT140Q96RY7 1462 aa22.36■■□□□ 1.17
PDCD11-202ENST00000466959 WDR97A6NE52 1622 aa22.35■■□□□ 1.17
PDCD11-202ENST00000466959 RAD54L2Q9Y4B4 1467 aa22.35■■□□□ 1.17
PDCD11-202ENST00000466959 ABCA10Q8WWZ4 1543 aa22.31■■□□□ 1.16
PDCD11-202ENST00000466959 RIMBP3CA6NJZ7 1639 aa22.3■■□□□ 1.16
PDCD11-202ENST00000466959 RIMBP3BA6NNM3 1639 aa22.3■■□□□ 1.16
PDCD11-202ENST00000466959 RIMBP3Q9UFD9 1639 aa22.3■■□□□ 1.16
PDCD11-202ENST00000466959 ARHGEF11O15085 1522 aa22.22■■□□□ 1.15
PDCD11-202ENST00000466959 ZNF608Q9ULD9 1512 aaPredicted RBP22.21■■□□□ 1.15
PDCD11-202ENST00000466959 ABCA5Q8WWZ7 1642 aa22.21■■□□□ 1.15
PDCD11-202ENST00000466959 EIF4G3O43432 1585 aaKnown RBP22.2■■□□□ 1.14
PDCD11-202ENST00000466959 KIF27Q86VH2 1401 aa22.16■■□□□ 1.14
PDCD11-202ENST00000466959 TDRD9Q8NDG6 1382 aaKnown RBP22.16■■□□□ 1.14
PDCD11-202ENST00000466959 GAPVD1Q14C86 1478 aa22.14■■□□□ 1.13
PDCD11-202ENST00000466959 TRHP20396 242 aaPredicted RBP22.13■■□□□ 1.13
PDCD11-202ENST00000466959 CYB5RLQ6IPT4 315 aa22.13■■□□□ 1.13
PDCD11-202ENST00000466959 AQRO60306 1485 aaKnown RBP eCLIP22.13■■□□□ 1.137e-6■■□□□ 12.2
PDCD11-202ENST00000466959 PBRM1Q86U86 1689 aa22.13■■□□□ 1.13
PDCD11-202ENST00000466959 RUSC2Q8N2Y8 1516 aa22.11■■□□□ 1.13
PDCD11-202ENST00000466959 EEA1Q15075 1411 aa22.09■■□□□ 1.13
PDCD11-202ENST00000466959 GRIN2BQ13224 1484 aa22.07■■□□□ 1.12
PDCD11-202ENST00000466959 ERICH3Q5RHP9 1530 aa22.06■■□□□ 1.12
PDCD11-202ENST00000466959 CUL7Q14999 1698 aa21.99■■□□□ 1.11
PDCD11-202ENST00000466959 IGF1RP08069 1367 aa21.99■■□□□ 1.11
PDCD11-202ENST00000466959 SNAPC4Q5SXM2 1469 aa21.97■■□□□ 1.11
PDCD11-202ENST00000466959 MAGI1Q96QZ7 1491 aaPredicted RBP21.97■■□□□ 1.11
PDCD11-202ENST00000466959 FBLN2P98095 1184 aa21.96■■□□□ 1.11
PDCD11-202ENST00000466959 ADAMTS12P58397 1594 aa21.95■■□□□ 1.11
PDCD11-202ENST00000466959 FAM9AQ8IZU1 332 aaPredicted RBP21.95■■□□□ 1.1
PDCD11-202ENST00000466959 ARAP1Q96P48 1450 aa21.95■■□□□ 1.1
PDCD11-202ENST00000466959 AEBP2Q6ZN18 517 aaPredicted RBP21.94■■□□□ 1.1
PDCD11-202ENST00000466959 CSRNP3Q8WYN3 585 aa21.93■■□□□ 1.1
PDCD11-202ENST00000466959 FHAD1B1AJZ9 1412 aa21.89■■□□□ 1.1
PDCD11-202ENST00000466959 CARMIL1Q5VZK9 1371 aa21.87■■□□□ 1.09
PDCD11-202ENST00000466959 CHD1O14646 1710 aa21.87■■□□□ 1.09
PDCD11-202ENST00000466959 SYNJ2O15056 1496 aa21.87■■□□□ 1.09
PDCD11-202ENST00000466959 PRXQ9BXM0 1461 aa21.87■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms