RNA–Protein interactions for RNA: ENST00000466912.5

PTPN20-211, Transcript of protein tyrosine phosphatase, non-receptor type 20, humanhuman

TSL 3

Gene PTPN20, Length 446 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN20-211ENST00000466912 NISCHQ9Y2I1 1504 aa24.17■■□□□ 1.46
PTPN20-211ENST00000466912 CCDC180Q9P1Z9 1646 aa21.32■■□□□ 1
PTPN20-211ENST00000466912 AEBP2Q6ZN18 517 aaPredicted RBP21.12■□□□□ 0.97
PTPN20-211ENST00000466912 ABCC9O60706 1549 aa20.83■□□□□ 0.93
PTPN20-211ENST00000466912 ZCCHC6Q5VYS8 1495 aaKnown RBP20.17■□□□□ 0.82
PTPN20-211ENST00000466912 DCAF8L2P0C7V8 631 aa20.15■□□□□ 0.82
PTPN20-211ENST00000466912 NACADO15069 1562 aa20.08■□□□□ 0.81
PTPN20-211ENST00000466912 MYO15BQ96JP2 1530 aa20.05■□□□□ 0.8
PTPN20-211ENST00000466912 RB1CC1Q8TDY2 1594 aa20.04■□□□□ 0.8
PTPN20-211ENST00000466912 DCAF1Q9Y4B6 1507 aa20■□□□□ 0.79
PTPN20-211ENST00000466912 CHIC1Q5VXU3 224 aa19.72■□□□□ 0.75
PTPN20-211ENST00000466912 PABPN1Q86U42 306 aaKnown RBP eCLIP19.56■□□□□ 0.72
PTPN20-211ENST00000466912 UNC13AQ9UPW8 1703 aa19.51■□□□□ 0.71
PTPN20-211ENST00000466912 SCRIBQ14160 1630 aa19.51■□□□□ 0.71
PTPN20-211ENST00000466912 BICRAQ9NZM4 1560 aa19.49■□□□□ 0.71
PTPN20-211ENST00000466912 SHROOM4Q9ULL8 1493 aa19.28■□□□□ 0.68
PTPN20-211ENST00000466912 DNAJC5BQ9UF47 199 aa19.12■□□□□ 0.65
PTPN20-211ENST00000466912 POTEDQ86YR6 584 aa19.09■□□□□ 0.65
PTPN20-211ENST00000466912 EIF4G1Q04637 1599 aaKnown RBP18.94■□□□□ 0.62
PTPN20-211ENST00000466912 CECR2Q9BXF3 1484 aa18.84■□□□□ 0.61
PTPN20-211ENST00000466912 CC2D2AQ9P2K1 1620 aa18.82■□□□□ 0.6
PTPN20-211ENST00000466912 BAZ1AQ9NRL2 1556 aaPredicted RBP18.68■□□□□ 0.58
PTPN20-211ENST00000466912 SMARCA4P51532 1647 aa18.67■□□□□ 0.58
PTPN20-211ENST00000466912 MROH2BQ7Z745 1585 aa18.64■□□□□ 0.57
PTPN20-211ENST00000466912 ATAD2BQ9ULI0 1458 aa18.62■□□□□ 0.57
PTPN20-211ENST00000466912 NCAPD3P42695 1498 aa18.6■□□□□ 0.57
PTPN20-211ENST00000466912 SMARCA2P51531 1590 aa18.53■□□□□ 0.56
PTPN20-211ENST00000466912 PEG3Q9GZU2 1588 aa18.52■□□□□ 0.56
PTPN20-211ENST00000466912 RSF1Q96T23 1441 aaPredicted RBP18.5■□□□□ 0.55
PTPN20-211ENST00000466912 HMGXB3Q12766 1538 aa18.45■□□□□ 0.54
PTPN20-211ENST00000466912 BAZ1BQ9UIG0 1483 aaKnown RBP18.42■□□□□ 0.54
PTPN20-211ENST00000466912 WIZO95785 1651 aa18.38■□□□□ 0.53
PTPN20-211ENST00000466912 SENP3Q9H4L4 574 aaPredicted RBP18.28■□□□□ 0.52
PTPN20-211ENST00000466912 TOP2AP11388 1531 aaKnown RBP18.22■□□□□ 0.51
PTPN20-211ENST00000466912 SUPT5HO00267 1087 aaKnown RBP18.11■□□□□ 0.49
PTPN20-211ENST00000466912 NESP48681 1621 aa18.09■□□□□ 0.49
PTPN20-211ENST00000466912 CADPSQ9ULU8 1353 aa18.07■□□□□ 0.48
PTPN20-211ENST00000466912 CCDC88BA6NC98 1476 aa18.05■□□□□ 0.48
PTPN20-211ENST00000466912 LAMC3Q9Y6N6 1575 aa18■□□□□ 0.47
PTPN20-211ENST00000466912 CFTRP13569 1480 aa17.97■□□□□ 0.47
PTPN20-211ENST00000466912 PDS5BQ9NTI5 1447 aa17.93■□□□□ 0.46
PTPN20-211ENST00000466912 ERCC6Q03468 1493 aa17.92■□□□□ 0.46
PTPN20-211ENST00000466912 PHF23Q9BUL5 403 aaPredicted RBP17.82■□□□□ 0.44
PTPN20-211ENST00000466912 FANCD2Q9BXW9 1451 aa17.82■□□□□ 0.44
PTPN20-211ENST00000466912 CEP164Q9UPV0 1460 aa17.75■□□□□ 0.43
PTPN20-211ENST00000466912 KIF21AQ7Z4S6 1674 aa17.75■□□□□ 0.43
PTPN20-211ENST00000466912 THOC2Q8NI27 1593 aaKnown RBP17.73■□□□□ 0.43
PTPN20-211ENST00000466912 MRC2Q9UBG0 1479 aa17.72■□□□□ 0.43
PTPN20-211ENST00000466912 CUX2O14529 1486 aa17.71■□□□□ 0.43
PTPN20-211ENST00000466912 WDR62O43379 1518 aa17.66■□□□□ 0.42
PTPN20-211ENST00000466912 PRDM2Q13029 1718 aa17.64■□□□□ 0.41
PTPN20-211ENST00000466912 URB2Q14146 1524 aaKnown RBP17.64■□□□□ 0.41
PTPN20-211ENST00000466912 TOPBP1Q92547 1522 aa17.54■□□□□ 0.4
PTPN20-211ENST00000466912 ABCC8Q09428 1581 aa17.53■□□□□ 0.4
PTPN20-211ENST00000466912 DNMBPQ6XZF7 1577 aa17.5■□□□□ 0.39
PTPN20-211ENST00000466912 CUX1P39880 1505 aa17.47■□□□□ 0.39
PTPN20-211ENST00000466912 POLA1P09884 1462 aaPredicted RBP17.42■□□□□ 0.38
PTPN20-211ENST00000466912 WRNQ14191 1432 aaPredicted RBP eCLIP17.41■□□□□ 0.38
PTPN20-211ENST00000466912 IFT140Q96RY7 1462 aa17.41■□□□□ 0.38
PTPN20-211ENST00000466912 FGD5Q6ZNL6 1462 aa17.37■□□□□ 0.37
PTPN20-211ENST00000466912 SOGA1O94964 1423 aa17.36■□□□□ 0.37
PTPN20-211ENST00000466912 RAD54L2Q9Y4B4 1467 aa17.36■□□□□ 0.37
PTPN20-211ENST00000466912 ZNF608Q9ULD9 1512 aaPredicted RBP17.34■□□□□ 0.37
PTPN20-211ENST00000466912 SYNJ1O43426 1573 aa17.32■□□□□ 0.36
PTPN20-211ENST00000466912 TOP2BQ02880 1626 aa17.31■□□□□ 0.36
PTPN20-211ENST00000466912 TARBP1Q13395 1621 aaKnown RBP17.31■□□□□ 0.36
PTPN20-211ENST00000466912 BIVM-ERCC5R4GMW8 1640 aa17.27■□□□□ 0.36
PTPN20-211ENST00000466912 AQRO60306 1485 aaKnown RBP eCLIP17.26■□□□□ 0.35
PTPN20-211ENST00000466912 TDRD9Q8NDG6 1382 aaKnown RBP17.26■□□□□ 0.35
PTPN20-211ENST00000466912 ABCA10Q8WWZ4 1543 aa17.23■□□□□ 0.35
PTPN20-211ENST00000466912 FOXD1Q16676 465 aa17.23■□□□□ 0.35
PTPN20-211ENST00000466912 EIF4G3O43432 1585 aaKnown RBP17.19■□□□□ 0.34
PTPN20-211ENST00000466912 WDR97A6NE52 1622 aa17.16■□□□□ 0.34
PTPN20-211ENST00000466912 GAPVD1Q14C86 1478 aa17.14■□□□□ 0.33
PTPN20-211ENST00000466912 GRIN2BQ13224 1484 aa17.12■□□□□ 0.33
PTPN20-211ENST00000466912 TRIM41Q8WV44 630 aa17.1■□□□□ 0.33
PTPN20-211ENST00000466912 ABCA5Q8WWZ7 1642 aa17.1■□□□□ 0.33
PTPN20-211ENST00000466912 DNAJC5Q9H3Z4 198 aa17.09■□□□□ 0.33
PTPN20-211ENST00000466912 SNAPC4Q5SXM2 1469 aa17.08■□□□□ 0.32
PTPN20-211ENST00000466912 OSCARQ8IYS5 282 aa17.05■□□□□ 0.32
PTPN20-211ENST00000466912 MAGI1Q96QZ7 1491 aaPredicted RBP17.05■□□□□ 0.32
PTPN20-211ENST00000466912 KIF27Q86VH2 1401 aa17.04■□□□□ 0.32
PTPN20-211ENST00000466912 IGF1RP08069 1367 aa17.01■□□□□ 0.31
PTPN20-211ENST00000466912 FBLN2P98095 1184 aa17■□□□□ 0.31
PTPN20-211ENST00000466912 CHMP7Q8WUX9 453 aaPredicted RBP17■□□□□ 0.31
PTPN20-211ENST00000466912 ERICH3Q5RHP9 1530 aa17■□□□□ 0.31
PTPN20-211ENST00000466912 SYNJ2O15056 1496 aa16.99■□□□□ 0.31
PTPN20-211ENST00000466912 PBRM1Q86U86 1689 aa16.97■□□□□ 0.31
PTPN20-211ENST00000466912 FHAD1B1AJZ9 1412 aa16.96■□□□□ 0.31
PTPN20-211ENST00000466912 RUSC2Q8N2Y8 1516 aa16.95■□□□□ 0.3
PTPN20-211ENST00000466912 ADAMTS12P58397 1594 aa16.93■□□□□ 0.3
PTPN20-211ENST00000466912 GRIN2AQ12879 1464 aa16.9■□□□□ 0.3
PTPN20-211ENST00000466912 CHD1O14646 1710 aa16.9■□□□□ 0.3
PTPN20-211ENST00000466912 CARMIL1Q5VZK9 1371 aa16.88■□□□□ 0.29
PTPN20-211ENST00000466912 NUP160Q12769 1436 aa16.86■□□□□ 0.29
PTPN20-211ENST00000466912 CLASP1Q7Z460 1538 aa16.81■□□□□ 0.28
PTPN20-211ENST00000466912 CUL7Q14999 1698 aa16.8■□□□□ 0.28
PTPN20-211ENST00000466912 CSRNP3Q8WYN3 585 aa16.79■□□□□ 0.28
PTPN20-211ENST00000466912 CEP170Q5SW79 1584 aa16.79■□□□□ 0.28
PTPN20-211ENST00000466912 EEA1Q15075 1411 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms