RNA–Protein interactions for RNA: ENST00000466897.1

NPHP4-205, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 1,192 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-205ENST00000466897 NISCHQ9Y2I1 1504 aa36.27■■■■□ 3.4
NPHP4-205ENST00000466897 CCDC180Q9P1Z9 1646 aa32.18■■■□□ 2.74
NPHP4-205ENST00000466897 ABCC9O60706 1549 aa30.78■■■□□ 2.52
NPHP4-205ENST00000466897 ZCCHC6Q5VYS8 1495 aaKnown RBP30.34■■■□□ 2.45
NPHP4-205ENST00000466897 DCAF1Q9Y4B6 1507 aa30.13■■■□□ 2.41
NPHP4-205ENST00000466897 MYO15BQ96JP2 1530 aa30.1■■■□□ 2.41
NPHP4-205ENST00000466897 NACADO15069 1562 aa30.07■■■□□ 2.4
NPHP4-205ENST00000466897 RB1CC1Q8TDY2 1594 aa29.96■■■□□ 2.39
NPHP4-205ENST00000466897 DCAF8L2P0C7V8 631 aa29.83■■■□□ 2.37
NPHP4-205ENST00000466897 UNC13AQ9UPW8 1703 aa29.37■■■□□ 2.29
NPHP4-205ENST00000466897 SCRIBQ14160 1630 aa29.23■■■□□ 2.27
NPHP4-205ENST00000466897 BICRAQ9NZM4 1560 aa29.03■■■□□ 2.24
NPHP4-205ENST00000466897 SHROOM4Q9ULL8 1493 aa28.87■■■□□ 2.21
NPHP4-205ENST00000466897 PABPN1Q86U42 306 aaKnown RBP eCLIP28.74■■■□□ 2.19
NPHP4-205ENST00000466897 DNAJC5BQ9UF47 199 aa28.27■■■□□ 2.12
NPHP4-205ENST00000466897 EIF4G1Q04637 1599 aaKnown RBP28.21■■■□□ 2.11
NPHP4-205ENST00000466897 CECR2Q9BXF3 1484 aa28.11■■■□□ 2.09
NPHP4-205ENST00000466897 BAZ1AQ9NRL2 1556 aaPredicted RBP28.11■■■□□ 2.09
NPHP4-205ENST00000466897 SMARCA4P51532 1647 aa28.07■■■□□ 2.08
NPHP4-205ENST00000466897 CC2D2AQ9P2K1 1620 aa27.96■■■□□ 2.07
NPHP4-205ENST00000466897 MROH2BQ7Z745 1585 aa27.91■■■□□ 2.06
NPHP4-205ENST00000466897 PEG3Q9GZU2 1588 aa27.85■■■□□ 2.05
NPHP4-205ENST00000466897 SMARCA2P51531 1590 aa27.79■■■□□ 2.04
NPHP4-205ENST00000466897 RSF1Q96T23 1441 aaPredicted RBP27.75■■■□□ 2.03
NPHP4-205ENST00000466897 ATAD2BQ9ULI0 1458 aa27.74■■■□□ 2.03
NPHP4-205ENST00000466897 NCAPD3P42695 1498 aa27.68■■■□□ 2.02
NPHP4-205ENST00000466897 WIZO95785 1651 aa27.67■■■□□ 2.02
NPHP4-205ENST00000466897 HMGXB3Q12766 1538 aa27.66■■■□□ 2.02
NPHP4-205ENST00000466897 BAZ1BQ9UIG0 1483 aaKnown RBP27.54■■■□□ 2
NPHP4-205ENST00000466897 TOP2AP11388 1531 aaKnown RBP27.44■■□□□ 1.98
NPHP4-205ENST00000466897 SUPT5HO00267 1087 aaKnown RBP27.22■■□□□ 1.95
NPHP4-205ENST00000466897 CCDC88BA6NC98 1476 aa27.03■■□□□ 1.92
NPHP4-205ENST00000466897 LAMC3Q9Y6N6 1575 aa26.93■■□□□ 1.9
NPHP4-205ENST00000466897 CADPSQ9ULU8 1353 aa26.85■■□□□ 1.89
NPHP4-205ENST00000466897 PRDM2Q13029 1718 aa26.85■■□□□ 1.89
NPHP4-205ENST00000466897 CFTRP13569 1480 aa26.84■■□□□ 1.89
NPHP4-205ENST00000466897 NESP48681 1621 aa26.79■■□□□ 1.88
NPHP4-205ENST00000466897 PDS5BQ9NTI5 1447 aa26.65■■□□□ 1.86
NPHP4-205ENST00000466897 KIF21AQ7Z4S6 1674 aa26.61■■□□□ 1.85
NPHP4-205ENST00000466897 FANCD2Q9BXW9 1451 aa26.55■■□□□ 1.84
NPHP4-205ENST00000466897 ERCC6Q03468 1493 aa26.51■■□□□ 1.83
NPHP4-205ENST00000466897 CEP164Q9UPV0 1460 aa26.49■■□□□ 1.83
NPHP4-205ENST00000466897 THOC2Q8NI27 1593 aaKnown RBP26.41■■□□□ 1.82
NPHP4-205ENST00000466897 MRC2Q9UBG0 1479 aa26.36■■□□□ 1.81
NPHP4-205ENST00000466897 WDR62O43379 1518 aa26.31■■□□□ 1.8
NPHP4-205ENST00000466897 ABCC8Q09428 1581 aa26.29■■□□□ 1.8
NPHP4-205ENST00000466897 URB2Q14146 1524 aaKnown RBP26.26■■□□□ 1.79
NPHP4-205ENST00000466897 DNMBPQ6XZF7 1577 aa26.25■■□□□ 1.79
NPHP4-205ENST00000466897 TOPBP1Q92547 1522 aa26.2■■□□□ 1.79
NPHP4-205ENST00000466897 CUX2O14529 1486 aa26.2■■□□□ 1.78
NPHP4-205ENST00000466897 CUX1P39880 1505 aa26.18■■□□□ 1.78
NPHP4-205ENST00000466897 BIVM-ERCC5R4GMW8 1640 aa26.17■■□□□ 1.78
NPHP4-205ENST00000466897 WRNQ14191 1432 aaPredicted RBP eCLIP26.15■■□□□ 1.78
NPHP4-205ENST00000466897 TOP2BQ02880 1626 aa26.14■■□□□ 1.77
NPHP4-205ENST00000466897 SYNJ1O43426 1573 aa26.11■■□□□ 1.77
NPHP4-205ENST00000466897 POLA1P09884 1462 aaPredicted RBP26■■□□□ 1.75
NPHP4-205ENST00000466897 FGD5Q6ZNL6 1462 aa26■■□□□ 1.75
NPHP4-205ENST00000466897 IFT140Q96RY7 1462 aa25.93■■□□□ 1.74
NPHP4-205ENST00000466897 TARBP1Q13395 1621 aaKnown RBP25.93■■□□□ 1.74
NPHP4-205ENST00000466897 WDR97A6NE52 1622 aa25.9■■□□□ 1.74
NPHP4-205ENST00000466897 SOGA1O94964 1423 aa25.85■■□□□ 1.73
NPHP4-205ENST00000466897 ABCA10Q8WWZ4 1543 aa25.82■■□□□ 1.72
NPHP4-205ENST00000466897 RAD54L2Q9Y4B4 1467 aa25.81■■□□□ 1.72
NPHP4-205ENST00000466897 TRIM41Q8WV44 630 aa25.76■■□□□ 1.71
NPHP4-205ENST00000466897 CHIC1Q5VXU3 224 aa25.75■■□□□ 1.71
NPHP4-205ENST00000466897 EIF4G3O43432 1585 aaKnown RBP25.73■■□□□ 1.71
NPHP4-205ENST00000466897 ABCA5Q8WWZ7 1642 aa25.72■■□□□ 1.71
NPHP4-205ENST00000466897 ZNF608Q9ULD9 1512 aaPredicted RBP25.71■■□□□ 1.71
NPHP4-205ENST00000466897 DNAJC5Q9H3Z4 198 aa25.64■■□□□ 1.7
NPHP4-205ENST00000466897 PBRM1Q86U86 1689 aa25.63■■□□□ 1.69
NPHP4-205ENST00000466897 GAPVD1Q14C86 1478 aa25.6■■□□□ 1.69
NPHP4-205ENST00000466897 AQRO60306 1485 aaKnown RBP eCLIP25.6■■□□□ 1.69
NPHP4-205ENST00000466897 TDRD9Q8NDG6 1382 aaKnown RBP25.59■■□□□ 1.69
NPHP4-205ENST00000466897 KIF27Q86VH2 1401 aa25.58■■□□□ 1.69
NPHP4-205ENST00000466897 GRIN2BQ13224 1484 aa25.54■■□□□ 1.68
NPHP4-205ENST00000466897 ERICH3Q5RHP9 1530 aa25.54■■□□□ 1.68
NPHP4-205ENST00000466897 MAGI1Q96QZ7 1491 aaPredicted RBP25.47■■□□□ 1.67
NPHP4-205ENST00000466897 EEA1Q15075 1411 aa25.46■■□□□ 1.67
NPHP4-205ENST00000466897 CUL7Q14999 1698 aa25.45■■□□□ 1.66
NPHP4-205ENST00000466897 RUSC2Q8N2Y8 1516 aa25.42■■□□□ 1.66
NPHP4-205ENST00000466897 SNAPC4Q5SXM2 1469 aa25.42■■□□□ 1.66
NPHP4-205ENST00000466897 ADAMTS12P58397 1594 aa25.41■■□□□ 1.66
NPHP4-205ENST00000466897 IGF1RP08069 1367 aa25.38■■□□□ 1.65
NPHP4-205ENST00000466897 CHD1O14646 1710 aa25.34■■□□□ 1.65
NPHP4-205ENST00000466897 SYNJ2O15056 1496 aa25.34■■□□□ 1.65
NPHP4-205ENST00000466897 FHAD1B1AJZ9 1412 aa25.33■■□□□ 1.65
NPHP4-205ENST00000466897 CARMIL1Q5VZK9 1371 aa25.24■■□□□ 1.63
NPHP4-205ENST00000466897 GRIN2AQ12879 1464 aa25.23■■□□□ 1.63
NPHP4-205ENST00000466897 PRXQ9BXM0 1461 aa25.23■■□□□ 1.63
NPHP4-205ENST00000466897 CSRNP3Q8WYN3 585 aa25.23■■□□□ 1.63
NPHP4-205ENST00000466897 KIF21BO75037 1637 aa25.19■■□□□ 1.62
NPHP4-205ENST00000466897 RAPGEF2Q9Y4G8 1499 aa25.19■■□□□ 1.62
NPHP4-205ENST00000466897 CHMP7Q8WUX9 453 aaPredicted RBP25.17■■□□□ 1.62
NPHP4-205ENST00000466897 NUP160Q12769 1436 aa25.12■■□□□ 1.61
NPHP4-205ENST00000466897 FAM9AQ8IZU1 332 aaPredicted RBP25.11■■□□□ 1.61
NPHP4-205ENST00000466897 CEP170Q5SW79 1584 aa25.1■■□□□ 1.61
NPHP4-205ENST00000466897 FBLN2P98095 1184 aa25.09■■□□□ 1.61
NPHP4-205ENST00000466897 CLASP1Q7Z460 1538 aa25.06■■□□□ 1.6
NPHP4-205ENST00000466897 CTTNBP2Q8WZ74 1663 aa25.05■■□□□ 1.6
NPHP4-205ENST00000466897 OSCARQ8IYS5 282 aa25.04■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms