RNA–Protein interactions for RNA: ENST00000466222.6

CAPN3-209, Transcript of calpain 3, humanhuman

TSL 2

Gene CAPN3, Length 1,934 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-209ENST00000466222 NISCHQ9Y2I1 1504 aa42.67■■■■■ 4.42
CAPN3-209ENST00000466222 CCDC180Q9P1Z9 1646 aa37.13■■■■□ 3.53
CAPN3-209ENST00000466222 ABCC9O60706 1549 aa35.82■■■■□ 3.32
CAPN3-209ENST00000466222 ZCCHC6Q5VYS8 1495 aaKnown RBP35.74■■■■□ 3.31
CAPN3-209ENST00000466222 DCAF8L2P0C7V8 631 aa35.66■■■■□ 3.3
CAPN3-209ENST00000466222 DCAF1Q9Y4B6 1507 aa35.14■■■■□ 3.22
CAPN3-209ENST00000466222 MYO15BQ96JP2 1530 aa34.85■■■■□ 3.17
CAPN3-209ENST00000466222 SHROOM4Q9ULL8 1493 aa34.82■■■■□ 3.16
CAPN3-209ENST00000466222 NACADO15069 1562 aa34.79■■■■□ 3.16
CAPN3-209ENST00000466222 RB1CC1Q8TDY2 1594 aa34.58■■■■□ 3.13
CAPN3-209ENST00000466222 SCRIBQ14160 1630 aa34.35■■■■□ 3.09
CAPN3-209ENST00000466222 PABPN1Q86U42 306 aaKnown RBP eCLIP33.85■■■■□ 3.01
CAPN3-209ENST00000466222 UNC13AQ9UPW8 1703 aa33.77■■■■□ 3
CAPN3-209ENST00000466222 BICRAQ9NZM4 1560 aa33.65■■■□□ 2.98
CAPN3-209ENST00000466222 CECR2Q9BXF3 1484 aa33.33■■■□□ 2.93
CAPN3-209ENST00000466222 SUPT5HO00267 1087 aaKnown RBP33.32■■■□□ 2.92
CAPN3-209ENST00000466222 RSF1Q96T23 1441 aaPredicted RBP33.05■■■□□ 2.88
CAPN3-209ENST00000466222 MROH2BQ7Z745 1585 aa33.02■■■□□ 2.88
CAPN3-209ENST00000466222 BAZ1AQ9NRL2 1556 aaPredicted RBP32.91■■■□□ 2.86
CAPN3-209ENST00000466222 SMARCA4P51532 1647 aa32.81■■■□□ 2.84
CAPN3-209ENST00000466222 WIZO95785 1651 aa32.65■■■□□ 2.82
CAPN3-209ENST00000466222 EIF4G1Q04637 1599 aaKnown RBP32.65■■■□□ 2.82
CAPN3-209ENST00000466222 ATAD2BQ9ULI0 1458 aa32.47■■■□□ 2.79
CAPN3-209ENST00000466222 PEG3Q9GZU2 1588 aa32.38■■■□□ 2.77
CAPN3-209ENST00000466222 SMARCA2P51531 1590 aa32.31■■■□□ 2.76
CAPN3-209ENST00000466222 CC2D2AQ9P2K1 1620 aa32.26■■■□□ 2.76
CAPN3-209ENST00000466222 TOP2AP11388 1531 aaKnown RBP32.26■■■□□ 2.75
CAPN3-209ENST00000466222 BAZ1BQ9UIG0 1483 aaKnown RBP32.24■■■□□ 2.75
CAPN3-209ENST00000466222 NCAPD3P42695 1498 aa32.23■■■□□ 2.75
CAPN3-209ENST00000466222 DNAJC5BQ9UF47 199 aa32.11■■■□□ 2.73
CAPN3-209ENST00000466222 CCDC88BA6NC98 1476 aa32.06■■■□□ 2.72
CAPN3-209ENST00000466222 HMGXB3Q12766 1538 aa32.04■■■□□ 2.72
CAPN3-209ENST00000466222 CHIC1Q5VXU3 224 aa31.63■■■□□ 2.65
CAPN3-209ENST00000466222 CADPSQ9ULU8 1353 aa31.43■■■□□ 2.62
CAPN3-209ENST00000466222 CFTRP13569 1480 aa31.42■■■□□ 2.62
CAPN3-209ENST00000466222 NESP48681 1621 aa31.34■■■□□ 2.61
CAPN3-209ENST00000466222 ABCC8Q09428 1581 aa31.27■■■□□ 2.6
CAPN3-209ENST00000466222 TRIM41Q8WV44 630 aa31.26■■■□□ 2.59
CAPN3-209ENST00000466222 WRNQ14191 1432 aaPredicted RBP eCLIP31.08■■■□□ 2.57
CAPN3-209ENST00000466222 LAMC3Q9Y6N6 1575 aa31.08■■■□□ 2.57
CAPN3-209ENST00000466222 FANCD2Q9BXW9 1451 aa31.06■■■□□ 2.56
CAPN3-209ENST00000466222 PDS5BQ9NTI5 1447 aa30.96■■■□□ 2.55
CAPN3-209ENST00000466222 SYNJ1O43426 1573 aa30.93■■■□□ 2.54
CAPN3-209ENST00000466222 PRDM2Q13029 1718 aa30.87■■■□□ 2.53
CAPN3-209ENST00000466222 CUX1P39880 1505 aa30.87■■■□□ 2.53
CAPN3-209ENST00000466222 CEP164Q9UPV0 1460 aa30.85■■■□□ 2.53
CAPN3-209ENST00000466222 FAM9AQ8IZU1 332 aaPredicted RBP30.81■■■□□ 2.52
CAPN3-209ENST00000466222 TOP2BQ02880 1626 aa30.75■■■□□ 2.51
CAPN3-209ENST00000466222 KIF21AQ7Z4S6 1674 aa30.73■■■□□ 2.51
CAPN3-209ENST00000466222 URB2Q14146 1524 aaKnown RBP30.71■■■□□ 2.51
CAPN3-209ENST00000466222 SOGA1O94964 1423 aa30.69■■■□□ 2.5
CAPN3-209ENST00000466222 ERCC6Q03468 1493 aa30.68■■■□□ 2.5
CAPN3-209ENST00000466222 BIVM-ERCC5R4GMW8 1640 aa30.66■■■□□ 2.5
CAPN3-209ENST00000466222 TOPBP1Q92547 1522 aa30.66■■■□□ 2.5
CAPN3-209ENST00000466222 RUSC2Q8N2Y8 1516 aa30.6■■■□□ 2.49
CAPN3-209ENST00000466222 DNMBPQ6XZF7 1577 aa30.6■■■□□ 2.49
CAPN3-209ENST00000466222 FGD5Q6ZNL6 1462 aa30.6■■■□□ 2.49
CAPN3-209ENST00000466222 MRC2Q9UBG0 1479 aa30.57■■■□□ 2.48
CAPN3-209ENST00000466222 LOC105371045A0A1W2PR82 267 aa30.52■■■□□ 2.48
CAPN3-209ENST00000466222 POLA1P09884 1462 aaPredicted RBP30.51■■■□□ 2.47
CAPN3-209ENST00000466222 EHMT2Q96KQ7 1210 aa30.49■■■□□ 2.47
CAPN3-209ENST00000466222 RAD54L2Q9Y4B4 1467 aa30.49■■■□□ 2.47
CAPN3-209ENST00000466222 CSRNP3Q8WYN3 585 aa30.39■■■□□ 2.46
CAPN3-209ENST00000466222 WDR62O43379 1518 aa30.38■■■□□ 2.45
CAPN3-209ENST00000466222 CUX2O14529 1486 aa30.36■■■□□ 2.45
CAPN3-209ENST00000466222 THOC2Q8NI27 1593 aaKnown RBP30.35■■■□□ 2.45
CAPN3-209ENST00000466222 EEA1Q15075 1411 aa30.31■■■□□ 2.44
CAPN3-209ENST00000466222 KIF27Q86VH2 1401 aa30.3■■■□□ 2.44
CAPN3-209ENST00000466222 TDRD9Q8NDG6 1382 aaKnown RBP30.27■■■□□ 2.44
CAPN3-209ENST00000466222 ABCA10Q8WWZ4 1543 aa30.26■■■□□ 2.44
CAPN3-209ENST00000466222 IGF1RP08069 1367 aa30.17■■■□□ 2.42
CAPN3-209ENST00000466222 TARBP1Q13395 1621 aaKnown RBP30.17■■■□□ 2.42
CAPN3-209ENST00000466222 IFT140Q96RY7 1462 aa30.13■■■□□ 2.41
CAPN3-209ENST00000466222 AQRO60306 1485 aaKnown RBP eCLIP30.12■■■□□ 2.41
CAPN3-209ENST00000466222 ZNF608Q9ULD9 1512 aaPredicted RBP30.11■■■□□ 2.41
CAPN3-209ENST00000466222 WDR97A6NE52 1622 aa30.05■■■□□ 2.4
CAPN3-209ENST00000466222 GAPVD1Q14C86 1478 aa30.05■■■□□ 2.4
CAPN3-209ENST00000466222 PRXQ9BXM0 1461 aa30.02■■■□□ 2.4
CAPN3-209ENST00000466222 RAPGEF2Q9Y4G8 1499 aa30.02■■■□□ 2.4
CAPN3-209ENST00000466222 UBTFP17480 764 aaKnown RBP30■■■□□ 2.39
CAPN3-209ENST00000466222 ABCA5Q8WWZ7 1642 aa29.98■■■□□ 2.39
CAPN3-209ENST00000466222 CARMIL1Q5VZK9 1371 aa29.98■■■□□ 2.39
CAPN3-209ENST00000466222 GOLGA3Q08378 1498 aa29.94■■■□□ 2.38
CAPN3-209ENST00000466222 KIF21BO75037 1637 aa29.9■■■□□ 2.38
CAPN3-209ENST00000466222 ERICH3Q5RHP9 1530 aa29.85■■■□□ 2.37
CAPN3-209ENST00000466222 GRIN2BQ13224 1484 aa29.85■■■□□ 2.37
CAPN3-209ENST00000466222 EIF4G3O43432 1585 aaKnown RBP29.83■■■□□ 2.37
CAPN3-209ENST00000466222 TNIKQ9UKE5 1360 aa29.82■■■□□ 2.36
CAPN3-209ENST00000466222 RANGAP1P46060 587 aaPredicted RBP29.78■■■□□ 2.36
CAPN3-209ENST00000466222 SNAPC4Q5SXM2 1469 aa29.74■■■□□ 2.35
CAPN3-209ENST00000466222 PBRM1Q86U86 1689 aa29.71■■■□□ 2.35
CAPN3-209ENST00000466222 FHAD1B1AJZ9 1412 aa29.7■■■□□ 2.35
CAPN3-209ENST00000466222 CUL7Q14999 1698 aa29.69■■■□□ 2.34
CAPN3-209ENST00000466222 CEP162Q5TB80 1403 aa29.67■■■□□ 2.34
CAPN3-209ENST00000466222 FBLN2P98095 1184 aa29.65■■■□□ 2.34
CAPN3-209ENST00000466222 ADAMTS12P58397 1594 aa29.63■■■□□ 2.33
CAPN3-209ENST00000466222 CHMP7Q8WUX9 453 aaPredicted RBP29.61■■■□□ 2.33
CAPN3-209ENST00000466222 MAGI1Q96QZ7 1491 aaPredicted RBP29.59■■■□□ 2.33
CAPN3-209ENST00000466222 SYNJ2O15056 1496 aa29.53■■■□□ 2.32
CAPN3-209ENST00000466222 CLIP1P30622 1438 aa29.52■■■□□ 2.32
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms