RNA–Protein interactions for RNA: ENST00000466175.5

LETM1-202, Transcript of leucine zipper and EF-hand containing transmembrane protein 1, humanhuman

TSL 2

Gene LETM1, Length 1,626 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LETM1-202ENST00000466175 NISCHQ9Y2I1 1504 aa39.92■■■■□ 3.98
LETM1-202ENST00000466175 CCDC180Q9P1Z9 1646 aa35.38■■■■□ 3.25
LETM1-202ENST00000466175 ABCC9O60706 1549 aa34.62■■■■□ 3.13
LETM1-202ENST00000466175 ZCCHC6Q5VYS8 1495 aaKnown RBP33.63■■■□□ 2.97
LETM1-202ENST00000466175 DCAF8L2P0C7V8 631 aa33.47■■■□□ 2.95
LETM1-202ENST00000466175 RB1CC1Q8TDY2 1594 aa33.25■■■□□ 2.91
LETM1-202ENST00000466175 NACADO15069 1562 aa33.22■■■□□ 2.91
LETM1-202ENST00000466175 DCAF1Q9Y4B6 1507 aa33.06■■■□□ 2.88
LETM1-202ENST00000466175 MYO15BQ96JP2 1530 aa32.98■■■□□ 2.87
LETM1-202ENST00000466175 SHROOM4Q9ULL8 1493 aa32.85■■■□□ 2.85
LETM1-202ENST00000466175 UNC13AQ9UPW8 1703 aa32.62■■■□□ 2.81
LETM1-202ENST00000466175 SCRIBQ14160 1630 aa32.44■■■□□ 2.78
LETM1-202ENST00000466175 PABPN1Q86U42 306 aaKnown RBP eCLIP32.42■■■□□ 2.78
LETM1-202ENST00000466175 BICRAQ9NZM4 1560 aa32.29■■■□□ 2.76
LETM1-202ENST00000466175 SUPT5HO00267 1087 aaKnown RBP31.95■■■□□ 2.71
LETM1-202ENST00000466175 DNAJC5BQ9UF47 199 aa31.67■■■□□ 2.66
LETM1-202ENST00000466175 EIF4G1Q04637 1599 aaKnown RBP31.42■■■□□ 2.62
LETM1-202ENST00000466175 CC2D2AQ9P2K1 1620 aa31.29■■■□□ 2.6
LETM1-202ENST00000466175 CECR2Q9BXF3 1484 aa31.17■■■□□ 2.58
LETM1-202ENST00000466175 RSF1Q96T23 1441 aaPredicted RBP31.15■■■□□ 2.58
LETM1-202ENST00000466175 CHIC1Q5VXU3 224 aa30.97■■■□□ 2.55
LETM1-202ENST00000466175 SMARCA4P51532 1647 aa30.97■■■□□ 2.55
LETM1-202ENST00000466175 BAZ1AQ9NRL2 1556 aaPredicted RBP30.91■■■□□ 2.54
LETM1-202ENST00000466175 MROH2BQ7Z745 1585 aa30.83■■■□□ 2.53
LETM1-202ENST00000466175 ATAD2BQ9ULI0 1458 aa30.74■■■□□ 2.51
LETM1-202ENST00000466175 SMARCA2P51531 1590 aa30.68■■■□□ 2.5
LETM1-202ENST00000466175 NCAPD3P42695 1498 aa30.65■■■□□ 2.5
LETM1-202ENST00000466175 PEG3Q9GZU2 1588 aa30.58■■■□□ 2.49
LETM1-202ENST00000466175 WIZO95785 1651 aa30.57■■■□□ 2.48
LETM1-202ENST00000466175 BAZ1BQ9UIG0 1483 aaKnown RBP30.52■■■□□ 2.48
LETM1-202ENST00000466175 HMGXB3Q12766 1538 aa30.52■■■□□ 2.48
LETM1-202ENST00000466175 TOP2AP11388 1531 aaKnown RBP30.33■■■□□ 2.45
LETM1-202ENST00000466175 TRIM41Q8WV44 630 aa30.07■■■□□ 2.4
LETM1-202ENST00000466175 NESP48681 1621 aa30.02■■■□□ 2.4
LETM1-202ENST00000466175 CCDC88BA6NC98 1476 aa30■■■□□ 2.39
LETM1-202ENST00000466175 LAMC3Q9Y6N6 1575 aa29.83■■■□□ 2.37
LETM1-202ENST00000466175 CADPSQ9ULU8 1353 aa29.8■■■□□ 2.36
LETM1-202ENST00000466175 ERCC6Q03468 1493 aa29.79■■■□□ 2.36
LETM1-202ENST00000466175 LOC105371045A0A1W2PR82 267 aa29.74■■■□□ 2.35
LETM1-202ENST00000466175 KIF21AQ7Z4S6 1674 aa29.65■■■□□ 2.34
LETM1-202ENST00000466175 CFTRP13569 1480 aa29.65■■■□□ 2.34
LETM1-202ENST00000466175 PDS5BQ9NTI5 1447 aa29.63■■■□□ 2.33
LETM1-202ENST00000466175 ABCC8Q09428 1581 aa29.52■■■□□ 2.32
LETM1-202ENST00000466175 FANCD2Q9BXW9 1451 aa29.5■■■□□ 2.31
LETM1-202ENST00000466175 PRDM2Q13029 1718 aa29.47■■■□□ 2.31
LETM1-202ENST00000466175 THOC2Q8NI27 1593 aaKnown RBP29.45■■■□□ 2.31
LETM1-202ENST00000466175 FAM9AQ8IZU1 332 aaPredicted RBP29.44■■■□□ 2.3
LETM1-202ENST00000466175 CEP164Q9UPV0 1460 aa29.44■■■□□ 2.3
LETM1-202ENST00000466175 MRC2Q9UBG0 1479 aa29.35■■■□□ 2.29
LETM1-202ENST00000466175 EEA1Q15075 1411 aa29.34■■■□□ 2.29
LETM1-202ENST00000466175 WRNQ14191 1432 aaPredicted RBP eCLIP29.32■■■□□ 2.28
LETM1-202ENST00000466175 CUX2O14529 1486 aa29.32■■■□□ 2.28
LETM1-202ENST00000466175 WDR62O43379 1518 aa29.23■■■□□ 2.27
LETM1-202ENST00000466175 URB2Q14146 1524 aaKnown RBP29.21■■■□□ 2.27
LETM1-202ENST00000466175 SYNJ1O43426 1573 aa29.14■■■□□ 2.25
LETM1-202ENST00000466175 SOGA1O94964 1423 aa29.11■■■□□ 2.25
LETM1-202ENST00000466175 PCGF6Q9BYE7 350 aa29.08■■■□□ 2.25
LETM1-202ENST00000466175 TOPBP1Q92547 1522 aa29.05■■■□□ 2.24
LETM1-202ENST00000466175 TOP2BQ02880 1626 aa29.04■■■□□ 2.24
LETM1-202ENST00000466175 TRIM26Q12899 539 aaPredicted RBP29.03■■■□□ 2.24
LETM1-202ENST00000466175 CSRNP3Q8WYN3 585 aa29.02■■■□□ 2.24
LETM1-202ENST00000466175 BIVM-ERCC5R4GMW8 1640 aa29.01■■■□□ 2.23
LETM1-202ENST00000466175 DNMBPQ6XZF7 1577 aa29■■■□□ 2.23
LETM1-202ENST00000466175 TNIKQ9UKE5 1360 aa28.93■■■□□ 2.22
LETM1-202ENST00000466175 EHMT2Q96KQ7 1210 aa28.93■■■□□ 2.22
LETM1-202ENST00000466175 RUSC2Q8N2Y8 1516 aa28.92■■■□□ 2.22
LETM1-202ENST00000466175 CUX1P39880 1505 aa28.9■■■□□ 2.22
LETM1-202ENST00000466175 GOLGA3Q08378 1498 aa28.89■■■□□ 2.22
LETM1-202ENST00000466175 KIF21BO75037 1637 aa28.87■■■□□ 2.21
LETM1-202ENST00000466175 HRCP23327 699 aa28.83■■■□□ 2.21
LETM1-202ENST00000466175 POLA1P09884 1462 aaPredicted RBP28.81■■■□□ 2.2
LETM1-202ENST00000466175 FGD5Q6ZNL6 1462 aa28.78■■■□□ 2.2
LETM1-202ENST00000466175 IFT140Q96RY7 1462 aa28.78■■■□□ 2.2
LETM1-202ENST00000466175 CEP162Q5TB80 1403 aa28.78■■■□□ 2.2
LETM1-202ENST00000466175 RAD54L2Q9Y4B4 1467 aa28.74■■■□□ 2.19
LETM1-202ENST00000466175 ZNF608Q9ULD9 1512 aaPredicted RBP28.73■■■□□ 2.19
LETM1-202ENST00000466175 TARBP1Q13395 1621 aaKnown RBP28.71■■■□□ 2.19
LETM1-202ENST00000466175 UBTFP17480 764 aaKnown RBP28.69■■■□□ 2.18
LETM1-202ENST00000466175 EIF4G3O43432 1585 aaKnown RBP28.6■■■□□ 2.17
LETM1-202ENST00000466175 AQRO60306 1485 aaKnown RBP eCLIP28.59■■■□□ 2.171e-6■■■■□ 23.5
LETM1-202ENST00000466175 ERICH3Q5RHP9 1530 aa28.57■■■□□ 2.16
LETM1-202ENST00000466175 TDRD9Q8NDG6 1382 aaKnown RBP28.57■■■□□ 2.16
LETM1-202ENST00000466175 KIF27Q86VH2 1401 aa28.56■■■□□ 2.16
LETM1-202ENST00000466175 WDR97A6NE52 1622 aa28.51■■■□□ 2.15
LETM1-202ENST00000466175 PRXQ9BXM0 1461 aa28.5■■■□□ 2.15
LETM1-202ENST00000466175 RAPGEF2Q9Y4G8 1499 aa28.5■■■□□ 2.15
LETM1-202ENST00000466175 ABCA10Q8WWZ4 1543 aa28.45■■■□□ 2.14
LETM1-202ENST00000466175 CLIP1P30622 1438 aa28.43■■■□□ 2.14
LETM1-202ENST00000466175 GAPVD1Q14C86 1478 aa28.36■■■□□ 2.13
LETM1-202ENST00000466175 ABCA5Q8WWZ7 1642 aa28.36■■■□□ 2.13
LETM1-202ENST00000466175 PBRM1Q86U86 1689 aa28.33■■■□□ 2.13
LETM1-202ENST00000466175 GRIN2BQ13224 1484 aa28.31■■■□□ 2.12
LETM1-202ENST00000466175 DNAJC5Q9H3Z4 198 aa28.31■■■□□ 2.12
LETM1-202ENST00000466175 SNAPC4Q5SXM2 1469 aa28.3■■■□□ 2.12
LETM1-202ENST00000466175 ZEB1P37275 1124 aaPredicted RBP28.29■■■□□ 2.12
LETM1-202ENST00000466175 VPS8Q8N3P4 1428 aa28.28■■■□□ 2.12
LETM1-202ENST00000466175 FBLN2P98095 1184 aa28.27■■■□□ 2.12
LETM1-202ENST00000466175 CHD1O14646 1710 aa28.25■■■□□ 2.11
LETM1-202ENST00000466175 PPARGC1BQ86YN6 1023 aaKnown RBP28.23■■■□□ 2.11
LETM1-202ENST00000466175 MAGI1Q96QZ7 1491 aaPredicted RBP28.2■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 88.5 ms