RNA–Protein interactions for RNA: ENST00000465522.5

ITGA4-204, Transcript of integrin subunit alpha 4, humanhuman

TSL 2

Gene ITGA4, Length 1,721 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGA4-204ENST00000465522 NISCHQ9Y2I1 1504 aa50.11■■■■■ 5.61
ITGA4-204ENST00000465522 CCDC180Q9P1Z9 1646 aa43.92■■■■■ 4.62
ITGA4-204ENST00000465522 ZCCHC6Q5VYS8 1495 aaKnown RBP41.97■■■■■ 4.31
ITGA4-204ENST00000465522 ABCC9O60706 1549 aa41.97■■■■■ 4.31
ITGA4-204ENST00000465522 DCAF8L2P0C7V8 631 aa41.64■■■■■ 4.26
ITGA4-204ENST00000465522 DCAF1Q9Y4B6 1507 aa41.43■■■■■ 4.22
ITGA4-204ENST00000465522 MYO15BQ96JP2 1530 aa41.14■■■■■ 4.18
ITGA4-204ENST00000465522 NACADO15069 1562 aa41.05■■■■■ 4.16
ITGA4-204ENST00000465522 RB1CC1Q8TDY2 1594 aa40.81■■■■■ 4.12
ITGA4-204ENST00000465522 SHROOM4Q9ULL8 1493 aa40.55■■■■■ 4.08
ITGA4-204ENST00000465522 SCRIBQ14160 1630 aa40.31■■■■■ 4.04
ITGA4-204ENST00000465522 UNC13AQ9UPW8 1703 aa39.94■■■■□ 3.98
ITGA4-204ENST00000465522 BICRAQ9NZM4 1560 aa39.53■■■■□ 3.92
ITGA4-204ENST00000465522 PABPN1Q86U42 306 aaKnown RBP eCLIP39.51■■■■□ 3.92
ITGA4-204ENST00000465522 CECR2Q9BXF3 1484 aa38.96■■■■□ 3.83
ITGA4-204ENST00000465522 SUPT5HO00267 1087 aaKnown RBP38.83■■■■□ 3.81
ITGA4-204ENST00000465522 BAZ1AQ9NRL2 1556 aaPredicted RBP38.75■■■■□ 3.79
ITGA4-204ENST00000465522 RSF1Q96T23 1441 aaPredicted RBP38.69■■■■□ 3.78
ITGA4-204ENST00000465522 MROH2BQ7Z745 1585 aa38.68■■■■□ 3.78
ITGA4-204ENST00000465522 SMARCA4P51532 1647 aa38.61■■■■□ 3.77
ITGA4-204ENST00000465522 EIF4G1Q04637 1599 aaKnown RBP38.41■■■■□ 3.74
ITGA4-204ENST00000465522 WIZO95785 1651 aa38.35■■■■□ 3.73
ITGA4-204ENST00000465522 PEG3Q9GZU2 1588 aa38.16■■■■□ 3.7
ITGA4-204ENST00000465522 ATAD2BQ9ULI0 1458 aa38.11■■■■□ 3.69
ITGA4-204ENST00000465522 SMARCA2P51531 1590 aa38.1■■■■□ 3.69
ITGA4-204ENST00000465522 CC2D2AQ9P2K1 1620 aa37.97■■■■□ 3.67
ITGA4-204ENST00000465522 TOP2AP11388 1531 aaKnown RBP37.93■■■■□ 3.66
ITGA4-204ENST00000465522 NCAPD3P42695 1498 aa37.88■■■■□ 3.65
ITGA4-204ENST00000465522 BAZ1BQ9UIG0 1483 aaKnown RBP37.88■■■■□ 3.65
ITGA4-204ENST00000465522 HMGXB3Q12766 1538 aa37.76■■■■□ 3.64
ITGA4-204ENST00000465522 CCDC88BA6NC98 1476 aa37.56■■■■□ 3.6
ITGA4-204ENST00000465522 DNAJC5BQ9UF47 199 aa37.46■■■■□ 3.59
ITGA4-204ENST00000465522 CFTRP13569 1480 aa36.9■■■■□ 3.5
ITGA4-204ENST00000465522 CHIC1Q5VXU3 224 aa36.9■■■■□ 3.5
ITGA4-204ENST00000465522 CADPSQ9ULU8 1353 aa36.89■■■■□ 3.5
ITGA4-204ENST00000465522 NESP48681 1621 aa36.68■■■■□ 3.46
ITGA4-204ENST00000465522 PRDM2Q13029 1718 aa36.67■■■■□ 3.46
ITGA4-204ENST00000465522 LAMC3Q9Y6N6 1575 aa36.67■■■■□ 3.46
ITGA4-204ENST00000465522 ABCC8Q09428 1581 aa36.59■■■■□ 3.45
ITGA4-204ENST00000465522 TRIM41Q8WV44 630 aa36.56■■■■□ 3.44
ITGA4-204ENST00000465522 FANCD2Q9BXW9 1451 aa36.46■■■■□ 3.43
ITGA4-204ENST00000465522 WRNQ14191 1432 aaPredicted RBP eCLIP36.45■■■■□ 3.43
ITGA4-204ENST00000465522 PDS5BQ9NTI5 1447 aa36.44■■■■□ 3.42
ITGA4-204ENST00000465522 CEP164Q9UPV0 1460 aa36.28■■■■□ 3.4
ITGA4-204ENST00000465522 SYNJ1O43426 1573 aa36.27■■■■□ 3.4
ITGA4-204ENST00000465522 KIF21AQ7Z4S6 1674 aa36.24■■■■□ 3.39
ITGA4-204ENST00000465522 CUX1P39880 1505 aa36.19■■■■□ 3.38
ITGA4-204ENST00000465522 TOP2BQ02880 1626 aa36.19■■■■□ 3.38
ITGA4-204ENST00000465522 BIVM-ERCC5R4GMW8 1640 aa36.15■■■■□ 3.38
ITGA4-204ENST00000465522 ERCC6Q03468 1493 aa36.07■■■■□ 3.37
ITGA4-204ENST00000465522 DNMBPQ6XZF7 1577 aa36.04■■■■□ 3.36
ITGA4-204ENST00000465522 URB2Q14146 1524 aaKnown RBP36.01■■■■□ 3.35
ITGA4-204ENST00000465522 TOPBP1Q92547 1522 aa36.01■■■■□ 3.35
ITGA4-204ENST00000465522 MRC2Q9UBG0 1479 aa35.95■■■■□ 3.35
ITGA4-204ENST00000465522 FGD5Q6ZNL6 1462 aa35.89■■■■□ 3.34
ITGA4-204ENST00000465522 FAM9AQ8IZU1 332 aaPredicted RBP35.86■■■■□ 3.33
ITGA4-204ENST00000465522 SOGA1O94964 1423 aa35.82■■■■□ 3.32
ITGA4-204ENST00000465522 POLA1P09884 1462 aaPredicted RBP35.8■■■■□ 3.32
ITGA4-204ENST00000465522 WDR62O43379 1518 aa35.76■■■■□ 3.32
ITGA4-204ENST00000465522 THOC2Q8NI27 1593 aaKnown RBP35.75■■■■□ 3.31
ITGA4-204ENST00000465522 RUSC2Q8N2Y8 1516 aa35.71■■■■□ 3.31
ITGA4-204ENST00000465522 EEA1Q15075 1411 aa35.69■■■■□ 3.3
ITGA4-204ENST00000465522 RAD54L2Q9Y4B4 1467 aa35.68■■■■□ 3.3
ITGA4-204ENST00000465522 KIF27Q86VH2 1401 aa35.59■■■■□ 3.29
ITGA4-204ENST00000465522 CUX2O14529 1486 aa35.59■■■■□ 3.29
ITGA4-204ENST00000465522 CSRNP3Q8WYN3 585 aa35.58■■■■□ 3.29
ITGA4-204ENST00000465522 ABCA10Q8WWZ4 1543 aa35.57■■■■□ 3.28
ITGA4-204ENST00000465522 TARBP1Q13395 1621 aaKnown RBP35.5■■■■□ 3.27
ITGA4-204ENST00000465522 LOC105371045A0A1W2PR82 267 aa35.48■■■■□ 3.27
ITGA4-204ENST00000465522 IFT140Q96RY7 1462 aa35.46■■■■□ 3.27
ITGA4-204ENST00000465522 WDR97A6NE52 1622 aa35.46■■■■□ 3.27
ITGA4-204ENST00000465522 TDRD9Q8NDG6 1382 aaKnown RBP35.4■■■■□ 3.26
ITGA4-204ENST00000465522 EHMT2Q96KQ7 1210 aa35.37■■■■□ 3.25
ITGA4-204ENST00000465522 IGF1RP08069 1367 aa35.32■■■■□ 3.25
ITGA4-204ENST00000465522 GAPVD1Q14C86 1478 aa35.3■■■■□ 3.24
ITGA4-204ENST00000465522 ABCA5Q8WWZ7 1642 aa35.29■■■■□ 3.24
ITGA4-204ENST00000465522 ZNF608Q9ULD9 1512 aaPredicted RBP35.25■■■■□ 3.23
ITGA4-204ENST00000465522 AQRO60306 1485 aaKnown RBP eCLIP35.24■■■■□ 3.23
ITGA4-204ENST00000465522 KIF21BO75037 1637 aa35.21■■■■□ 3.23
ITGA4-204ENST00000465522 PRXQ9BXM0 1461 aa35.19■■■■□ 3.22
ITGA4-204ENST00000465522 ERICH3Q5RHP9 1530 aa35.16■■■■□ 3.22
ITGA4-204ENST00000465522 GOLGA3Q08378 1498 aa35.15■■■■□ 3.22
ITGA4-204ENST00000465522 CARMIL1Q5VZK9 1371 aa35.15■■■■□ 3.22
ITGA4-204ENST00000465522 RAPGEF2Q9Y4G8 1499 aa35.11■■■■□ 3.21
ITGA4-204ENST00000465522 EIF4G3O43432 1585 aaKnown RBP35.11■■■■□ 3.21
ITGA4-204ENST00000465522 PBRM1Q86U86 1689 aa35.1■■■■□ 3.21
ITGA4-204ENST00000465522 UBTFP17480 764 aaKnown RBP35.1■■■■□ 3.21
ITGA4-204ENST00000465522 GRIN2BQ13224 1484 aa35.1■■■■□ 3.21
ITGA4-204ENST00000465522 CUL7Q14999 1698 aa35.07■■■■□ 3.2
ITGA4-204ENST00000465522 TNIKQ9UKE5 1360 aa34.97■■■■□ 3.19
ITGA4-204ENST00000465522 FHAD1B1AJZ9 1412 aa34.91■■■■□ 3.18
ITGA4-204ENST00000465522 SNAPC4Q5SXM2 1469 aa34.89■■■■□ 3.18
ITGA4-204ENST00000465522 ADAMTS12P58397 1594 aa34.87■■■■□ 3.17
ITGA4-204ENST00000465522 MAGI1Q96QZ7 1491 aaPredicted RBP34.85■■■■□ 3.17
ITGA4-204ENST00000465522 CHMP7Q8WUX9 453 aaPredicted RBP34.73■■■■□ 3.15
ITGA4-204ENST00000465522 CEP162Q5TB80 1403 aa34.73■■■■□ 3.15
ITGA4-204ENST00000465522 SYNJ2O15056 1496 aa34.72■■■■□ 3.15
ITGA4-204ENST00000465522 FBLN2P98095 1184 aa34.69■■■■□ 3.14
ITGA4-204ENST00000465522 RANGAP1P46060 587 aaPredicted RBP34.66■■■■□ 3.14
ITGA4-204ENST00000465522 GRIN2AQ12879 1464 aa34.65■■■■□ 3.14
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms