RNA–Protein interactions for RNA: ENST00000465229.5

EXOSC3-203, Transcript of exosome component 3, humanhuman

TSL 2

Gene EXOSC3, Length 1,625 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3-203ENST00000465229 NISCHQ9Y2I1 1504 aa39.72■■■■□ 3.95
EXOSC3-203ENST00000465229 CCDC180Q9P1Z9 1646 aa34.91■■■■□ 3.18
EXOSC3-203ENST00000465229 ABCC9O60706 1549 aa33.69■■■□□ 2.98
EXOSC3-203ENST00000465229 ZCCHC6Q5VYS8 1495 aaKnown RBP33.21■■■□□ 2.91
EXOSC3-203ENST00000465229 DCAF8L2P0C7V8 631 aa33.05■■■□□ 2.88
EXOSC3-203ENST00000465229 DCAF1Q9Y4B6 1507 aa32.85■■■□□ 2.85
EXOSC3-203ENST00000465229 MYO15BQ96JP2 1530 aa32.75■■■□□ 2.83
EXOSC3-203ENST00000465229 NACADO15069 1562 aa32.73■■■□□ 2.83
EXOSC3-203ENST00000465229 RB1CC1Q8TDY2 1594 aa32.6■■■□□ 2.81
EXOSC3-203ENST00000465229 SCRIBQ14160 1630 aa31.99■■■□□ 2.71
EXOSC3-203ENST00000465229 SHROOM4Q9ULL8 1493 aa31.86■■■□□ 2.69
EXOSC3-203ENST00000465229 UNC13AQ9UPW8 1703 aa31.83■■■□□ 2.69
EXOSC3-203ENST00000465229 PABPN1Q86U42 306 aaKnown RBP eCLIP31.67■■■□□ 2.66
EXOSC3-203ENST00000465229 BICRAQ9NZM4 1560 aa31.64■■■□□ 2.66
EXOSC3-203ENST00000465229 CECR2Q9BXF3 1484 aa30.92■■■□□ 2.54
EXOSC3-203ENST00000465229 EIF4G1Q04637 1599 aaKnown RBP30.74■■■□□ 2.51
EXOSC3-203ENST00000465229 BAZ1AQ9NRL2 1556 aaPredicted RBP30.7■■■□□ 2.51
EXOSC3-203ENST00000465229 MROH2BQ7Z745 1585 aa30.65■■■□□ 2.5
EXOSC3-203ENST00000465229 SMARCA4P51532 1647 aa30.64■■■□□ 2.5
EXOSC3-203ENST00000465229 RSF1Q96T23 1441 aaPredicted RBP30.56■■■□□ 2.48
EXOSC3-203ENST00000465229 CC2D2AQ9P2K1 1620 aa30.45■■■□□ 2.46
EXOSC3-203ENST00000465229 DNAJC5BQ9UF47 199 aa30.44■■■□□ 2.46
EXOSC3-203ENST00000465229 ATAD2BQ9ULI0 1458 aa30.38■■■□□ 2.45
EXOSC3-203ENST00000465229 SUPT5HO00267 1087 aaKnown RBP30.34■■■□□ 2.45
EXOSC3-203ENST00000465229 PEG3Q9GZU2 1588 aa30.33■■■□□ 2.45
EXOSC3-203ENST00000465229 WIZO95785 1651 aa30.31■■■□□ 2.44
EXOSC3-203ENST00000465229 SMARCA2P51531 1590 aa30.31■■■□□ 2.44
EXOSC3-203ENST00000465229 NCAPD3P42695 1498 aa30.26■■■□□ 2.43
EXOSC3-203ENST00000465229 BAZ1BQ9UIG0 1483 aaKnown RBP30.13■■■□□ 2.41
EXOSC3-203ENST00000465229 HMGXB3Q12766 1538 aa30.1■■■□□ 2.41
EXOSC3-203ENST00000465229 TOP2AP11388 1531 aaKnown RBP30.01■■■□□ 2.39
EXOSC3-203ENST00000465229 CCDC88BA6NC98 1476 aa29.73■■■□□ 2.35
EXOSC3-203ENST00000465229 CADPSQ9ULU8 1353 aa29.43■■■□□ 2.3
EXOSC3-203ENST00000465229 CFTRP13569 1480 aa29.37■■■□□ 2.29
EXOSC3-203ENST00000465229 NESP48681 1621 aa29.35■■■□□ 2.29
EXOSC3-203ENST00000465229 LAMC3Q9Y6N6 1575 aa29.29■■■□□ 2.28
EXOSC3-203ENST00000465229 PDS5BQ9NTI5 1447 aa29.13■■■□□ 2.25
EXOSC3-203ENST00000465229 FANCD2Q9BXW9 1451 aa29.06■■■□□ 2.24
EXOSC3-203ENST00000465229 PRDM2Q13029 1718 aa29.03■■■□□ 2.24
EXOSC3-203ENST00000465229 ERCC6Q03468 1493 aa28.95■■■□□ 2.23
EXOSC3-203ENST00000465229 CEP164Q9UPV0 1460 aa28.94■■■□□ 2.22
EXOSC3-203ENST00000465229 KIF21AQ7Z4S6 1674 aa28.92■■■□□ 2.22
EXOSC3-203ENST00000465229 ABCC8Q09428 1581 aa28.81■■■□□ 2.2
EXOSC3-203ENST00000465229 WRNQ14191 1432 aaPredicted RBP eCLIP28.77■■■□□ 2.2
EXOSC3-203ENST00000465229 MRC2Q9UBG0 1479 aa28.76■■■□□ 2.2
EXOSC3-203ENST00000465229 URB2Q14146 1524 aaKnown RBP28.74■■■□□ 2.19
EXOSC3-203ENST00000465229 CHIC1Q5VXU3 224 aa28.7■■■□□ 2.19
EXOSC3-203ENST00000465229 CUX1P39880 1505 aa28.7■■■□□ 2.18
EXOSC3-203ENST00000465229 THOC2Q8NI27 1593 aaKnown RBP28.67■■■□□ 2.18
EXOSC3-203ENST00000465229 TOPBP1Q92547 1522 aa28.67■■■□□ 2.18
EXOSC3-203ENST00000465229 DNMBPQ6XZF7 1577 aa28.65■■■□□ 2.18
EXOSC3-203ENST00000465229 WDR62O43379 1518 aa28.63■■■□□ 2.17
EXOSC3-203ENST00000465229 SYNJ1O43426 1573 aa28.63■■■□□ 2.17
EXOSC3-203ENST00000465229 TRIM41Q8WV44 630 aa28.6■■■□□ 2.17
EXOSC3-203ENST00000465229 TOP2BQ02880 1626 aa28.58■■■□□ 2.17
EXOSC3-203ENST00000465229 BIVM-ERCC5R4GMW8 1640 aa28.54■■■□□ 2.16
EXOSC3-203ENST00000465229 FGD5Q6ZNL6 1462 aa28.49■■■□□ 2.15
EXOSC3-203ENST00000465229 POLA1P09884 1462 aaPredicted RBP28.48■■■□□ 2.15
EXOSC3-203ENST00000465229 CUX2O14529 1486 aa28.42■■■□□ 2.14
EXOSC3-203ENST00000465229 SOGA1O94964 1423 aa28.4■■■□□ 2.14
EXOSC3-203ENST00000465229 RAD54L2Q9Y4B4 1467 aa28.38■■■□□ 2.13
EXOSC3-203ENST00000465229 IFT140Q96RY7 1462 aa28.32■■■□□ 2.12
EXOSC3-203ENST00000465229 TARBP1Q13395 1621 aaKnown RBP28.28■■■□□ 2.12
EXOSC3-203ENST00000465229 ABCA10Q8WWZ4 1543 aa28.24■■■□□ 2.11
EXOSC3-203ENST00000465229 TDRD9Q8NDG6 1382 aaKnown RBP28.19■■■□□ 2.1
EXOSC3-203ENST00000465229 ZNF608Q9ULD9 1512 aaPredicted RBP28.18■■■□□ 2.1
EXOSC3-203ENST00000465229 WDR97A6NE52 1622 aa28.13■■■□□ 2.09
EXOSC3-203ENST00000465229 AQRO60306 1485 aaKnown RBP eCLIP28.13■■■□□ 2.092e-6■■■□□ 15.2
EXOSC3-203ENST00000465229 RUSC2Q8N2Y8 1516 aa28.11■■■□□ 2.09
EXOSC3-203ENST00000465229 KIF27Q86VH2 1401 aa28.11■■■□□ 2.09
EXOSC3-203ENST00000465229 GAPVD1Q14C86 1478 aa28.06■■■□□ 2.08
EXOSC3-203ENST00000465229 FAM9AQ8IZU1 332 aaPredicted RBP28.03■■■□□ 2.08
EXOSC3-203ENST00000465229 ABCA5Q8WWZ7 1642 aa28.02■■■□□ 2.08
EXOSC3-203ENST00000465229 EIF4G3O43432 1585 aaKnown RBP28■■■□□ 2.07
EXOSC3-203ENST00000465229 IGF1RP08069 1367 aa27.98■■■□□ 2.07
EXOSC3-203ENST00000465229 EEA1Q15075 1411 aa27.98■■■□□ 2.07
EXOSC3-203ENST00000465229 GRIN2BQ13224 1484 aa27.95■■■□□ 2.06
EXOSC3-203ENST00000465229 CSRNP3Q8WYN3 585 aa27.94■■■□□ 2.06
EXOSC3-203ENST00000465229 ERICH3Q5RHP9 1530 aa27.89■■■□□ 2.06
EXOSC3-203ENST00000465229 PBRM1Q86U86 1689 aa27.84■■■□□ 2.05
EXOSC3-203ENST00000465229 SNAPC4Q5SXM2 1469 aa27.82■■■□□ 2.04
EXOSC3-203ENST00000465229 CARMIL1Q5VZK9 1371 aa27.8■■■□□ 2.04
EXOSC3-203ENST00000465229 MAGI1Q96QZ7 1491 aaPredicted RBP27.79■■■□□ 2.04
EXOSC3-203ENST00000465229 PRXQ9BXM0 1461 aa27.75■■■□□ 2.03
EXOSC3-203ENST00000465229 FHAD1B1AJZ9 1412 aa27.75■■■□□ 2.03
EXOSC3-203ENST00000465229 ADAMTS12P58397 1594 aa27.71■■■□□ 2.03
EXOSC3-203ENST00000465229 CUL7Q14999 1698 aa27.71■■■□□ 2.03
EXOSC3-203ENST00000465229 CHMP7Q8WUX9 453 aaPredicted RBP27.7■■■□□ 2.02
EXOSC3-203ENST00000465229 SYNJ2O15056 1496 aa27.69■■■□□ 2.02
EXOSC3-203ENST00000465229 FBLN2P98095 1184 aa27.69■■■□□ 2.02
EXOSC3-203ENST00000465229 RAPGEF2Q9Y4G8 1499 aa27.66■■■□□ 2.02
EXOSC3-203ENST00000465229 EHMT2Q96KQ7 1210 aa27.63■■■□□ 2.01
EXOSC3-203ENST00000465229 KIF21BO75037 1637 aa27.6■■■□□ 2.01
EXOSC3-203ENST00000465229 GRIN2AQ12879 1464 aa27.59■■■□□ 2.01
EXOSC3-203ENST00000465229 LOC105371045A0A1W2PR82 267 aa27.56■■■□□ 2
EXOSC3-203ENST00000465229 GOLGA3Q08378 1498 aa27.54■■■□□ 2
EXOSC3-203ENST00000465229 CHD1O14646 1710 aa27.51■■□□□ 1.99
EXOSC3-203ENST00000465229 UBTFP17480 764 aaKnown RBP27.49■■□□□ 1.99
EXOSC3-203ENST00000465229 NUP160Q12769 1436 aa27.46■■□□□ 1.99
EXOSC3-203ENST00000465229 OSCARQ8IYS5 282 aa27.43■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms