RNA–Protein interactions for RNA: ENST00000463685.1

ABCF3-204, Transcript of ATP binding cassette subfamily F member 3, humanhuman

TSL 2

Gene ABCF3, Length 661 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCF3-204ENST00000463685 NISCHQ9Y2I1 1504 aa35.22■■■■□ 3.23
ABCF3-204ENST00000463685 CCDC180Q9P1Z9 1646 aa30.95■■■□□ 2.55
ABCF3-204ENST00000463685 ABCC9O60706 1549 aa29.86■■■□□ 2.37
ABCF3-204ENST00000463685 ZCCHC6Q5VYS8 1495 aaKnown RBP29.46■■■□□ 2.31
ABCF3-204ENST00000463685 DCAF8L2P0C7V8 631 aa29.32■■■□□ 2.28
ABCF3-204ENST00000463685 DCAF1Q9Y4B6 1507 aa29.07■■■□□ 2.24
ABCF3-204ENST00000463685 NACADO15069 1562 aa28.97■■■□□ 2.23
ABCF3-204ENST00000463685 MYO15BQ96JP2 1530 aa28.93■■■□□ 2.22
ABCF3-204ENST00000463685 RB1CC1Q8TDY2 1594 aa28.87■■■□□ 2.21
ABCF3-204ENST00000463685 SCRIBQ14160 1630 aa28.45■■■□□ 2.14
ABCF3-204ENST00000463685 SHROOM4Q9ULL8 1493 aa28.4■■■□□ 2.14
ABCF3-204ENST00000463685 UNC13AQ9UPW8 1703 aa28.28■■■□□ 2.12
ABCF3-204ENST00000463685 PABPN1Q86U42 306 aaKnown RBP eCLIP28.08■■■□□ 2.09
ABCF3-204ENST00000463685 BICRAQ9NZM4 1560 aa28.04■■■□□ 2.08
ABCF3-204ENST00000463685 CECR2Q9BXF3 1484 aa27.45■■□□□ 1.99
ABCF3-204ENST00000463685 EIF4G1Q04637 1599 aaKnown RBP27.22■■□□□ 1.95
ABCF3-204ENST00000463685 BAZ1AQ9NRL2 1556 aaPredicted RBP27.22■■□□□ 1.95
ABCF3-204ENST00000463685 MROH2BQ7Z745 1585 aa27.21■■□□□ 1.95
ABCF3-204ENST00000463685 SMARCA4P51532 1647 aa27.2■■□□□ 1.95
ABCF3-204ENST00000463685 RSF1Q96T23 1441 aaPredicted RBP27.11■■□□□ 1.93
ABCF3-204ENST00000463685 SUPT5HO00267 1087 aaKnown RBP27■■□□□ 1.91
ABCF3-204ENST00000463685 CC2D2AQ9P2K1 1620 aa26.98■■□□□ 1.91
ABCF3-204ENST00000463685 WIZO95785 1651 aa26.95■■□□□ 1.91
ABCF3-204ENST00000463685 ATAD2BQ9ULI0 1458 aa26.9■■□□□ 1.9
ABCF3-204ENST00000463685 DNAJC5BQ9UF47 199 aa26.9■■□□□ 1.9
ABCF3-204ENST00000463685 PEG3Q9GZU2 1588 aa26.85■■□□□ 1.89
ABCF3-204ENST00000463685 SMARCA2P51531 1590 aa26.84■■□□□ 1.89
ABCF3-204ENST00000463685 NCAPD3P42695 1498 aa26.74■■□□□ 1.87
ABCF3-204ENST00000463685 BAZ1BQ9UIG0 1483 aaKnown RBP26.71■■□□□ 1.87
ABCF3-204ENST00000463685 HMGXB3Q12766 1538 aa26.65■■□□□ 1.86
ABCF3-204ENST00000463685 TOP2AP11388 1531 aaKnown RBP26.65■■□□□ 1.86
ABCF3-204ENST00000463685 CCDC88BA6NC98 1476 aa26.38■■□□□ 1.81
ABCF3-204ENST00000463685 NESP48681 1621 aa26.04■■□□□ 1.76
ABCF3-204ENST00000463685 CADPSQ9ULU8 1353 aa26.04■■□□□ 1.76
ABCF3-204ENST00000463685 CFTRP13569 1480 aa25.99■■□□□ 1.75
ABCF3-204ENST00000463685 LAMC3Q9Y6N6 1575 aa25.92■■□□□ 1.74
ABCF3-204ENST00000463685 PRDM2Q13029 1718 aa25.81■■□□□ 1.72
ABCF3-204ENST00000463685 FANCD2Q9BXW9 1451 aa25.76■■□□□ 1.71
ABCF3-204ENST00000463685 PDS5BQ9NTI5 1447 aa25.75■■□□□ 1.71
ABCF3-204ENST00000463685 KIF21AQ7Z4S6 1674 aa25.7■■□□□ 1.7
ABCF3-204ENST00000463685 ERCC6Q03468 1493 aa25.65■■□□□ 1.7
ABCF3-204ENST00000463685 CEP164Q9UPV0 1460 aa25.65■■□□□ 1.7
ABCF3-204ENST00000463685 ABCC8Q09428 1581 aa25.65■■□□□ 1.7
ABCF3-204ENST00000463685 CHIC1Q5VXU3 224 aa25.52■■□□□ 1.68
ABCF3-204ENST00000463685 WRNQ14191 1432 aaPredicted RBP eCLIP25.52■■□□□ 1.68
ABCF3-204ENST00000463685 URB2Q14146 1524 aaKnown RBP25.49■■□□□ 1.67
ABCF3-204ENST00000463685 CUX1P39880 1505 aa25.48■■□□□ 1.67
ABCF3-204ENST00000463685 MRC2Q9UBG0 1479 aa25.48■■□□□ 1.67
ABCF3-204ENST00000463685 SYNJ1O43426 1573 aa25.47■■□□□ 1.67
ABCF3-204ENST00000463685 THOC2Q8NI27 1593 aaKnown RBP25.43■■□□□ 1.66
ABCF3-204ENST00000463685 TOPBP1Q92547 1522 aa25.42■■□□□ 1.66
ABCF3-204ENST00000463685 DNMBPQ6XZF7 1577 aa25.41■■□□□ 1.66
ABCF3-204ENST00000463685 TRIM41Q8WV44 630 aa25.39■■□□□ 1.66
ABCF3-204ENST00000463685 TOP2BQ02880 1626 aa25.37■■□□□ 1.65
ABCF3-204ENST00000463685 WDR62O43379 1518 aa25.36■■□□□ 1.65
ABCF3-204ENST00000463685 BIVM-ERCC5R4GMW8 1640 aa25.35■■□□□ 1.65
ABCF3-204ENST00000463685 FGD5Q6ZNL6 1462 aa25.28■■□□□ 1.64
ABCF3-204ENST00000463685 POLA1P09884 1462 aaPredicted RBP25.25■■□□□ 1.63
ABCF3-204ENST00000463685 RAD54L2Q9Y4B4 1467 aa25.19■■□□□ 1.62
ABCF3-204ENST00000463685 CUX2O14529 1486 aa25.17■■□□□ 1.62
ABCF3-204ENST00000463685 SOGA1O94964 1423 aa25.16■■□□□ 1.62
ABCF3-204ENST00000463685 TARBP1Q13395 1621 aaKnown RBP25.08■■□□□ 1.6
ABCF3-204ENST00000463685 IFT140Q96RY7 1462 aa25.06■■□□□ 1.6
ABCF3-204ENST00000463685 ABCA10Q8WWZ4 1543 aa25.02■■□□□ 1.6
ABCF3-204ENST00000463685 RUSC2Q8N2Y8 1516 aa25.01■■□□□ 1.59
ABCF3-204ENST00000463685 WDR97A6NE52 1622 aa25.01■■□□□ 1.59
ABCF3-204ENST00000463685 TDRD9Q8NDG6 1382 aaKnown RBP24.99■■□□□ 1.59
ABCF3-204ENST00000463685 ZNF608Q9ULD9 1512 aaPredicted RBP24.99■■□□□ 1.59
ABCF3-204ENST00000463685 FAM9AQ8IZU1 332 aaPredicted RBP24.97■■□□□ 1.59
ABCF3-204ENST00000463685 AQRO60306 1485 aaKnown RBP eCLIP24.93■■□□□ 1.585e-8■■■□□ 18.8
ABCF3-204ENST00000463685 KIF27Q86VH2 1401 aa24.92■■□□□ 1.58
ABCF3-204ENST00000463685 ABCA5Q8WWZ7 1642 aa24.88■■□□□ 1.57
ABCF3-204ENST00000463685 GAPVD1Q14C86 1478 aa24.87■■□□□ 1.57
ABCF3-204ENST00000463685 EIF4G3O43432 1585 aaKnown RBP24.86■■□□□ 1.57
ABCF3-204ENST00000463685 EEA1Q15075 1411 aa24.8■■□□□ 1.56
ABCF3-204ENST00000463685 IGF1RP08069 1367 aa24.79■■□□□ 1.56
ABCF3-204ENST00000463685 CSRNP3Q8WYN3 585 aa24.77■■□□□ 1.56
ABCF3-204ENST00000463685 PBRM1Q86U86 1689 aa24.76■■□□□ 1.55
ABCF3-204ENST00000463685 GRIN2BQ13224 1484 aa24.76■■□□□ 1.55
ABCF3-204ENST00000463685 ERICH3Q5RHP9 1530 aa24.71■■□□□ 1.55
ABCF3-204ENST00000463685 SNAPC4Q5SXM2 1469 aa24.69■■□□□ 1.54
ABCF3-204ENST00000463685 EHMT2Q96KQ7 1210 aa24.68■■□□□ 1.54
ABCF3-204ENST00000463685 CARMIL1Q5VZK9 1371 aa24.64■■□□□ 1.53
ABCF3-204ENST00000463685 PRXQ9BXM0 1461 aa24.61■■□□□ 1.53
ABCF3-204ENST00000463685 ADAMTS12P58397 1594 aa24.61■■□□□ 1.53
ABCF3-204ENST00000463685 CUL7Q14999 1698 aa24.6■■□□□ 1.53
ABCF3-204ENST00000463685 MAGI1Q96QZ7 1491 aaPredicted RBP24.59■■□□□ 1.53
ABCF3-204ENST00000463685 FHAD1B1AJZ9 1412 aa24.58■■□□□ 1.53
ABCF3-204ENST00000463685 LOC105371045A0A1W2PR82 267 aa24.56■■□□□ 1.52
ABCF3-204ENST00000463685 RAPGEF2Q9Y4G8 1499 aa24.55■■□□□ 1.52
ABCF3-204ENST00000463685 KIF21BO75037 1637 aa24.54■■□□□ 1.52
ABCF3-204ENST00000463685 FBLN2P98095 1184 aa24.54■■□□□ 1.52
ABCF3-204ENST00000463685 SYNJ2O15056 1496 aa24.51■■□□□ 1.51
ABCF3-204ENST00000463685 CHMP7Q8WUX9 453 aaPredicted RBP24.51■■□□□ 1.51
ABCF3-204ENST00000463685 GOLGA3Q08378 1498 aa24.47■■□□□ 1.51
ABCF3-204ENST00000463685 GRIN2AQ12879 1464 aa24.45■■□□□ 1.51
ABCF3-204ENST00000463685 CHD1O14646 1710 aa24.44■■□□□ 1.5
ABCF3-204ENST00000463685 UBTFP17480 764 aaKnown RBP24.42■■□□□ 1.5
ABCF3-204ENST00000463685 CEP170Q5SW79 1584 aa24.33■■□□□ 1.49
ABCF3-204ENST00000463685 NUP160Q12769 1436 aa24.3■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms