RNA–Protein interactions for RNA: ENST00000463539.5

CCDC78-206, Transcript of coiled-coil domain containing 78, humanhuman

TSL 2

Gene CCDC78, Length 1,831 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC78-206ENST00000463539 NISCHQ9Y2I1 1504 aa43.42■■■■■ 4.54
CCDC78-206ENST00000463539 CCDC180Q9P1Z9 1646 aa37.92■■■■□ 3.66
CCDC78-206ENST00000463539 ZCCHC6Q5VYS8 1495 aaKnown RBP36.46■■■■□ 3.43
CCDC78-206ENST00000463539 ABCC9O60706 1549 aa36.03■■■■□ 3.36
CCDC78-206ENST00000463539 DCAF8L2P0C7V8 631 aa35.93■■■■□ 3.34
CCDC78-206ENST00000463539 DCAF1Q9Y4B6 1507 aa35.92■■■■□ 3.34
CCDC78-206ENST00000463539 MYO15BQ96JP2 1530 aa35.56■■■■□ 3.28
CCDC78-206ENST00000463539 NACADO15069 1562 aa35.38■■■■□ 3.25
CCDC78-206ENST00000463539 SHROOM4Q9ULL8 1493 aa35.31■■■■□ 3.24
CCDC78-206ENST00000463539 RB1CC1Q8TDY2 1594 aa35.12■■■■□ 3.21
CCDC78-206ENST00000463539 SCRIBQ14160 1630 aa34.86■■■■□ 3.17
CCDC78-206ENST00000463539 UNC13AQ9UPW8 1703 aa34.28■■■■□ 3.08
CCDC78-206ENST00000463539 BICRAQ9NZM4 1560 aa34.03■■■■□ 3.04
CCDC78-206ENST00000463539 PABPN1Q86U42 306 aaKnown RBP eCLIP33.95■■■■□ 3.03
CCDC78-206ENST00000463539 SUPT5HO00267 1087 aaKnown RBP33.89■■■■□ 3.02
CCDC78-206ENST00000463539 CECR2Q9BXF3 1484 aa33.74■■■□□ 2.99
CCDC78-206ENST00000463539 RSF1Q96T23 1441 aaPredicted RBP33.63■■■□□ 2.97
CCDC78-206ENST00000463539 BAZ1AQ9NRL2 1556 aaPredicted RBP33.56■■■□□ 2.96
CCDC78-206ENST00000463539 MROH2BQ7Z745 1585 aa33.53■■■□□ 2.96
CCDC78-206ENST00000463539 SMARCA4P51532 1647 aa33.4■■■□□ 2.94
CCDC78-206ENST00000463539 WIZO95785 1651 aa33.22■■■□□ 2.91
CCDC78-206ENST00000463539 EIF4G1Q04637 1599 aaKnown RBP33.05■■■□□ 2.88
CCDC78-206ENST00000463539 PEG3Q9GZU2 1588 aa33.01■■■□□ 2.88
CCDC78-206ENST00000463539 TOP2AP11388 1531 aaKnown RBP32.92■■■□□ 2.86
CCDC78-206ENST00000463539 ATAD2BQ9ULI0 1458 aa32.92■■■□□ 2.86
CCDC78-206ENST00000463539 SMARCA2P51531 1590 aa32.9■■■□□ 2.86
CCDC78-206ENST00000463539 BAZ1BQ9UIG0 1483 aaKnown RBP32.74■■■□□ 2.83
CCDC78-206ENST00000463539 NCAPD3P42695 1498 aa32.67■■■□□ 2.82
CCDC78-206ENST00000463539 HMGXB3Q12766 1538 aa32.61■■■□□ 2.81
CCDC78-206ENST00000463539 CC2D2AQ9P2K1 1620 aa32.58■■■□□ 2.81
CCDC78-206ENST00000463539 CCDC88BA6NC98 1476 aa32.57■■■□□ 2.8
CCDC78-206ENST00000463539 CHIC1Q5VXU3 224 aa32.34■■■□□ 2.77
CCDC78-206ENST00000463539 TRIM41Q8WV44 630 aa31.9■■■□□ 2.7
CCDC78-206ENST00000463539 CFTRP13569 1480 aa31.9■■■□□ 2.7
CCDC78-206ENST00000463539 DNAJC5BQ9UF47 199 aa31.89■■■□□ 2.69
CCDC78-206ENST00000463539 CADPSQ9ULU8 1353 aa31.83■■■□□ 2.69
CCDC78-206ENST00000463539 ABCC8Q09428 1581 aa31.82■■■□□ 2.68
CCDC78-206ENST00000463539 WRNQ14191 1432 aaPredicted RBP eCLIP31.68■■■□□ 2.66
CCDC78-206ENST00000463539 PRDM2Q13029 1718 aa31.63■■■□□ 2.65
CCDC78-206ENST00000463539 LAMC3Q9Y6N6 1575 aa31.57■■■□□ 2.64
CCDC78-206ENST00000463539 NESP48681 1621 aa31.57■■■□□ 2.64
CCDC78-206ENST00000463539 SYNJ1O43426 1573 aa31.52■■■□□ 2.64
CCDC78-206ENST00000463539 FANCD2Q9BXW9 1451 aa31.48■■■□□ 2.63
CCDC78-206ENST00000463539 TOP2BQ02880 1626 aa31.41■■■□□ 2.62
CCDC78-206ENST00000463539 PDS5BQ9NTI5 1447 aa31.37■■■□□ 2.61
CCDC78-206ENST00000463539 CUX1P39880 1505 aa31.37■■■□□ 2.61
CCDC78-206ENST00000463539 BIVM-ERCC5R4GMW8 1640 aa31.35■■■□□ 2.61
CCDC78-206ENST00000463539 CEP164Q9UPV0 1460 aa31.3■■■□□ 2.6
CCDC78-206ENST00000463539 FAM9AQ8IZU1 332 aaPredicted RBP31.29■■■□□ 2.6
CCDC78-206ENST00000463539 SOGA1O94964 1423 aa31.21■■■□□ 2.59
CCDC78-206ENST00000463539 DNMBPQ6XZF7 1577 aa31.15■■■□□ 2.58
CCDC78-206ENST00000463539 EEA1Q15075 1411 aa31.15■■■□□ 2.58
CCDC78-206ENST00000463539 KIF21AQ7Z4S6 1674 aa31.14■■■□□ 2.58
CCDC78-206ENST00000463539 TOPBP1Q92547 1522 aa31.1■■■□□ 2.57
CCDC78-206ENST00000463539 LOC105371045A0A1W2PR82 267 aa31.08■■■□□ 2.57
CCDC78-206ENST00000463539 FGD5Q6ZNL6 1462 aa31.07■■■□□ 2.56
CCDC78-206ENST00000463539 URB2Q14146 1524 aaKnown RBP31.07■■■□□ 2.56
CCDC78-206ENST00000463539 RUSC2Q8N2Y8 1516 aa31.07■■■□□ 2.56
CCDC78-206ENST00000463539 CSRNP3Q8WYN3 585 aa30.97■■■□□ 2.55
CCDC78-206ENST00000463539 MRC2Q9UBG0 1479 aa30.97■■■□□ 2.55
CCDC78-206ENST00000463539 POLA1P09884 1462 aaPredicted RBP30.95■■■□□ 2.55
CCDC78-206ENST00000463539 ERCC6Q03468 1493 aa30.95■■■□□ 2.55
CCDC78-206ENST00000463539 KIF27Q86VH2 1401 aa30.9■■■□□ 2.54
CCDC78-206ENST00000463539 EHMT2Q96KQ7 1210 aa30.85■■■□□ 2.53
CCDC78-206ENST00000463539 CUX2O14529 1486 aa30.85■■■□□ 2.53
CCDC78-206ENST00000463539 RAD54L2Q9Y4B4 1467 aa30.83■■■□□ 2.53
CCDC78-206ENST00000463539 WDR62O43379 1518 aa30.8■■■□□ 2.52
CCDC78-206ENST00000463539 ABCA10Q8WWZ4 1543 aa30.79■■■□□ 2.52
CCDC78-206ENST00000463539 THOC2Q8NI27 1593 aaKnown RBP30.72■■■□□ 2.51
CCDC78-206ENST00000463539 KIF21BO75037 1637 aa30.71■■■□□ 2.51
CCDC78-206ENST00000463539 GOLGA3Q08378 1498 aa30.71■■■□□ 2.51
CCDC78-206ENST00000463539 WDR97A6NE52 1622 aa30.65■■■□□ 2.5
CCDC78-206ENST00000463539 PRXQ9BXM0 1461 aa30.63■■■□□ 2.49
CCDC78-206ENST00000463539 TARBP1Q13395 1621 aaKnown RBP30.63■■■□□ 2.49
CCDC78-206ENST00000463539 IGF1RP08069 1367 aa30.62■■■□□ 2.49
CCDC78-206ENST00000463539 RAPGEF2Q9Y4G8 1499 aa30.59■■■□□ 2.49
CCDC78-206ENST00000463539 UBTFP17480 764 aaKnown RBP30.57■■■□□ 2.48
CCDC78-206ENST00000463539 TDRD9Q8NDG6 1382 aaKnown RBP30.56■■■□□ 2.48
CCDC78-206ENST00000463539 IFT140Q96RY7 1462 aa30.56■■■□□ 2.48
CCDC78-206ENST00000463539 ERICH3Q5RHP9 1530 aa30.56■■■□□ 2.48
CCDC78-206ENST00000463539 TNIKQ9UKE5 1360 aa30.56■■■□□ 2.48
CCDC78-206ENST00000463539 ABCA5Q8WWZ7 1642 aa30.54■■■□□ 2.48
CCDC78-206ENST00000463539 GAPVD1Q14C86 1478 aa30.5■■■□□ 2.47
CCDC78-206ENST00000463539 CARMIL1Q5VZK9 1371 aa30.47■■■□□ 2.47
CCDC78-206ENST00000463539 CEP162Q5TB80 1403 aa30.4■■■□□ 2.46
CCDC78-206ENST00000463539 AQRO60306 1485 aaKnown RBP eCLIP30.39■■■□□ 2.46
CCDC78-206ENST00000463539 CUL7Q14999 1698 aa30.39■■■□□ 2.45
CCDC78-206ENST00000463539 ZNF608Q9ULD9 1512 aaPredicted RBP30.38■■■□□ 2.45
CCDC78-206ENST00000463539 GRIN2BQ13224 1484 aa30.3■■■□□ 2.44
CCDC78-206ENST00000463539 PBRM1Q86U86 1689 aa30.29■■■□□ 2.44
CCDC78-206ENST00000463539 EIF4G3O43432 1585 aaKnown RBP30.27■■■□□ 2.44
CCDC78-206ENST00000463539 CLIP1P30622 1438 aa30.21■■■□□ 2.43
CCDC78-206ENST00000463539 FHAD1B1AJZ9 1412 aa30.18■■■□□ 2.42
CCDC78-206ENST00000463539 ADAMTS12P58397 1594 aa30.17■■■□□ 2.42
CCDC78-206ENST00000463539 RANGAP1P46060 587 aaPredicted RBP30.12■■■□□ 2.41
CCDC78-206ENST00000463539 SNAPC4Q5SXM2 1469 aa30.12■■■□□ 2.41
CCDC78-206ENST00000463539 MAGI1Q96QZ7 1491 aaPredicted RBP30.06■■■□□ 2.4
CCDC78-206ENST00000463539 CTTNBP2Q8WZ74 1663 aa29.98■■■□□ 2.39
CCDC78-206ENST00000463539 SYNJ2O15056 1496 aa29.95■■■□□ 2.39
CCDC78-206ENST00000463539 GRIN2AQ12879 1464 aa29.94■■■□□ 2.38
Retrieved 100 of 20,778 RNA–protein pairs in 93.7 ms