RNA–Protein interactions for RNA: ENST00000463370.5

VAPB-203, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 2,393 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-203ENST00000463370 NISCHQ9Y2I1 1504 aa28.3■■■□□ 2.12
VAPB-203ENST00000463370 CCDC180Q9P1Z9 1646 aa24.35■■□□□ 1.49
VAPB-203ENST00000463370 ZCCHC6Q5VYS8 1495 aaKnown RBP23.83■■□□□ 1.41
VAPB-203ENST00000463370 SHROOM4Q9ULL8 1493 aa23.57■■□□□ 1.36
VAPB-203ENST00000463370 DCAF8L2P0C7V8 631 aa23.5■■□□□ 1.35
VAPB-203ENST00000463370 DCAF1Q9Y4B6 1507 aa23.27■■□□□ 1.32
VAPB-203ENST00000463370 ABCC9O60706 1549 aa23.05■■□□□ 1.28
VAPB-203ENST00000463370 MYO15BQ96JP2 1530 aa22.84■■□□□ 1.25
VAPB-203ENST00000463370 SUPT5HO00267 1087 aaKnown RBP22.8■■□□□ 1.24
VAPB-203ENST00000463370 SCRIBQ14160 1630 aa22.67■■□□□ 1.22
VAPB-203ENST00000463370 NACADO15069 1562 aa22.66■■□□□ 1.22
VAPB-203ENST00000463370 RB1CC1Q8TDY2 1594 aa22.41■■□□□ 1.18
VAPB-203ENST00000463370 RSF1Q96T23 1441 aaPredicted RBP22.15■■□□□ 1.14
VAPB-203ENST00000463370 CECR2Q9BXF3 1484 aa22.1■■□□□ 1.13
VAPB-203ENST00000463370 UNC13AQ9UPW8 1703 aa22.01■■□□□ 1.11
VAPB-203ENST00000463370 MROH2BQ7Z745 1585 aa21.96■■□□□ 1.11
VAPB-203ENST00000463370 CHIC1Q5VXU3 224 aa21.92■■□□□ 1.1
VAPB-203ENST00000463370 PABPN1Q86U42 306 aaKnown RBP eCLIP21.89■■□□□ 1.1
VAPB-203ENST00000463370 BICRAQ9NZM4 1560 aa21.85■■□□□ 1.09
VAPB-203ENST00000463370 BAZ1AQ9NRL2 1556 aaPredicted RBP21.77■■□□□ 1.08
VAPB-203ENST00000463370 WIZO95785 1651 aa21.77■■□□□ 1.08
VAPB-203ENST00000463370 SMARCA4P51532 1647 aa21.67■■□□□ 1.06
VAPB-203ENST00000463370 TOP2AP11388 1531 aaKnown RBP21.47■■□□□ 1.03
VAPB-203ENST00000463370 CCDC88BA6NC98 1476 aa21.35■■□□□ 1.01
VAPB-203ENST00000463370 PEG3Q9GZU2 1588 aa21.33■■□□□ 1.01
VAPB-203ENST00000463370 SMARCA2P51531 1590 aa21.33■■□□□ 1
VAPB-203ENST00000463370 TRIM41Q8WV44 630 aa21.31■■□□□ 1
VAPB-203ENST00000463370 ATAD2BQ9ULI0 1458 aa21.29■■□□□ 1
VAPB-203ENST00000463370 EIF4G1Q04637 1599 aaKnown RBP21.27■■□□□ 1
VAPB-203ENST00000463370 LOC105371045A0A1W2PR82 267 aa21.21■□□□□ 0.99
VAPB-203ENST00000463370 BAZ1BQ9UIG0 1483 aaKnown RBP21.16■□□□□ 0.98
VAPB-203ENST00000463370 FAM9AQ8IZU1 332 aaPredicted RBP21.07■□□□□ 0.96
VAPB-203ENST00000463370 ABCC8Q09428 1581 aa21.06■□□□□ 0.96
VAPB-203ENST00000463370 NCAPD3P42695 1498 aa20.99■□□□□ 0.95
VAPB-203ENST00000463370 HMGXB3Q12766 1538 aa20.93■□□□□ 0.94
VAPB-203ENST00000463370 EHMT2Q96KQ7 1210 aa20.87■□□□□ 0.93
VAPB-203ENST00000463370 WRNQ14191 1432 aaPredicted RBP eCLIP20.8■□□□□ 0.92
VAPB-203ENST00000463370 CC2D2AQ9P2K1 1620 aa20.77■□□□□ 0.91
VAPB-203ENST00000463370 SOGA1O94964 1423 aa20.76■□□□□ 0.91
VAPB-203ENST00000463370 SYNJ1O43426 1573 aa20.73■□□□□ 0.91
VAPB-203ENST00000463370 RUSC2Q8N2Y8 1516 aa20.69■□□□□ 0.9
VAPB-203ENST00000463370 CFTRP13569 1480 aa20.65■□□□□ 0.9
VAPB-203ENST00000463370 AEBP2Q6ZN18 517 aaPredicted RBP20.56■□□□□ 0.88
VAPB-203ENST00000463370 CSRNP3Q8WYN3 585 aa20.56■□□□□ 0.88
VAPB-203ENST00000463370 EEA1Q15075 1411 aa20.54■□□□□ 0.88
VAPB-203ENST00000463370 TOP2BQ02880 1626 aa20.53■□□□□ 0.88
VAPB-203ENST00000463370 PCGF6Q9BYE7 350 aa20.53■□□□□ 0.88
VAPB-203ENST00000463370 CADPSQ9ULU8 1353 aa20.52■□□□□ 0.88
VAPB-203ENST00000463370 CUX1P39880 1505 aa20.49■□□□□ 0.87
VAPB-203ENST00000463370 BIVM-ERCC5R4GMW8 1640 aa20.47■□□□□ 0.87
VAPB-203ENST00000463370 DNAJC5BQ9UF47 199 aa20.44■□□□□ 0.86
VAPB-203ENST00000463370 TNIKQ9UKE5 1360 aa20.37■□□□□ 0.85
VAPB-203ENST00000463370 PRDM2Q13029 1718 aa20.36■□□□□ 0.85
VAPB-203ENST00000463370 GOLGA3Q08378 1498 aa20.36■□□□□ 0.85
VAPB-203ENST00000463370 UBTFP17480 764 aaKnown RBP20.36■□□□□ 0.85
VAPB-203ENST00000463370 NESP48681 1621 aa20.36■□□□□ 0.85
VAPB-203ENST00000463370 CEP162Q5TB80 1403 aa20.35■□□□□ 0.85
VAPB-203ENST00000463370 CEP164Q9UPV0 1460 aa20.32■□□□□ 0.84
VAPB-203ENST00000463370 TRIM26Q12899 539 aaPredicted RBP20.31■□□□□ 0.84
VAPB-203ENST00000463370 FANCD2Q9BXW9 1451 aa20.31■□□□□ 0.84
VAPB-203ENST00000463370 KIF21BO75037 1637 aa20.29■□□□□ 0.84
VAPB-203ENST00000463370 RAPGEF2Q9Y4G8 1499 aa20.28■□□□□ 0.84
VAPB-203ENST00000463370 PPARGC1BQ86YN6 1023 aaKnown RBP20.26■□□□□ 0.83
VAPB-203ENST00000463370 KIF27Q86VH2 1401 aa20.21■□□□□ 0.83
VAPB-203ENST00000463370 FGD5Q6ZNL6 1462 aa20.21■□□□□ 0.83
VAPB-203ENST00000463370 PRXQ9BXM0 1461 aa20.19■□□□□ 0.82
VAPB-203ENST00000463370 LAMC3Q9Y6N6 1575 aa20.17■□□□□ 0.82
VAPB-203ENST00000463370 CUX2O14529 1486 aa20.15■□□□□ 0.82
VAPB-203ENST00000463370 TOPBP1Q92547 1522 aa20.12■□□□□ 0.81
VAPB-203ENST00000463370 HRCP23327 699 aa20.11■□□□□ 0.81
VAPB-203ENST00000463370 DNMBPQ6XZF7 1577 aa20.11■□□□□ 0.81
VAPB-203ENST00000463370 CLIP1P30622 1438 aa20.1■□□□□ 0.81
VAPB-203ENST00000463370 RANGAP1P46060 587 aaPredicted RBP20.1■□□□□ 0.81
VAPB-203ENST00000463370 ERICH3Q5RHP9 1530 aa20.09■□□□□ 0.81
VAPB-203ENST00000463370 IGF1RP08069 1367 aa20.08■□□□□ 0.81
VAPB-203ENST00000463370 RAD54L2Q9Y4B4 1467 aa20.08■□□□□ 0.8
VAPB-203ENST00000463370 POLA1P09884 1462 aaPredicted RBP20.07■□□□□ 0.8
VAPB-203ENST00000463370 URB2Q14146 1524 aaKnown RBP20.07■□□□□ 0.8
VAPB-203ENST00000463370 PDS5BQ9NTI5 1447 aa20.05■□□□□ 0.8
VAPB-203ENST00000463370 TTBK1Q5TCY1 1321 aaPredicted RBP20.03■□□□□ 0.8
VAPB-203ENST00000463370 ABCA10Q8WWZ4 1543 aa19.98■□□□□ 0.79
VAPB-203ENST00000463370 KIF21AQ7Z4S6 1674 aa19.97■□□□□ 0.79
VAPB-203ENST00000463370 CARMIL1Q5VZK9 1371 aa19.96■□□□□ 0.79
VAPB-203ENST00000463370 VPS8Q8N3P4 1428 aa19.94■□□□□ 0.78
VAPB-203ENST00000463370 ARAP1Q96P48 1450 aa19.89■□□□□ 0.77
VAPB-203ENST00000463370 TDRD9Q8NDG6 1382 aaKnown RBP19.87■□□□□ 0.77
VAPB-203ENST00000463370 WDR97A6NE52 1622 aa19.84■□□□□ 0.77
VAPB-203ENST00000463370 ARHGAP35Q9NRY4 1499 aa19.82■□□□□ 0.76
VAPB-203ENST00000463370 MRC2Q9UBG0 1479 aa19.79■□□□□ 0.76
VAPB-203ENST00000463370 ABCA5Q8WWZ7 1642 aa19.78■□□□□ 0.76
VAPB-203ENST00000463370 GAPVD1Q14C86 1478 aa19.76■□□□□ 0.75
VAPB-203ENST00000463370 TARBP1Q13395 1621 aaKnown RBP19.76■□□□□ 0.75
VAPB-203ENST00000463370 APLP2Q06481 763 aa19.73■□□□□ 0.75
VAPB-203ENST00000463370 CUL7Q14999 1698 aa19.72■□□□□ 0.75
VAPB-203ENST00000463370 AQRO60306 1485 aaKnown RBP eCLIP19.68■□□□□ 0.741e-6■■■■□ 26.3
VAPB-203ENST00000463370 KANK4Q5T7N3 995 aaPredicted RBP19.67■□□□□ 0.74
VAPB-203ENST00000463370 WDR62O43379 1518 aa19.66■□□□□ 0.74
VAPB-203ENST00000463370 P3H3Q8IVL6 736 aa19.65■□□□□ 0.74
VAPB-203ENST00000463370 ERCC6Q03468 1493 aa19.65■□□□□ 0.74
VAPB-203ENST00000463370 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.63■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 111.4 ms