RNA–Protein interactions for RNA: ENST00000463066.1

HLA-DPA1-245, Transcript of major histocompatibility complex, class II, DP alpha 1, humanhuman

Gene HLA-DPA1, Length 580 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPA1-245ENST00000463066 NISCHQ9Y2I1 1504 aa40.27■■■■■ 4.04
HLA-DPA1-245ENST00000463066 CCDC180Q9P1Z9 1646 aa35.62■■■■□ 3.29
HLA-DPA1-245ENST00000463066 ABCC9O60706 1549 aa34.94■■■■□ 3.18
HLA-DPA1-245ENST00000463066 DCAF8L2P0C7V8 631 aa33.71■■■□□ 2.99
HLA-DPA1-245ENST00000463066 ZCCHC6Q5VYS8 1495 aaKnown RBP33.58■■■□□ 2.97
HLA-DPA1-245ENST00000463066 RB1CC1Q8TDY2 1594 aa33.51■■■□□ 2.96
HLA-DPA1-245ENST00000463066 NACADO15069 1562 aa33.5■■■□□ 2.95
HLA-DPA1-245ENST00000463066 MYO15BQ96JP2 1530 aa33.3■■■□□ 2.92
HLA-DPA1-245ENST00000463066 DCAF1Q9Y4B6 1507 aa33.23■■■□□ 2.91
HLA-DPA1-245ENST00000463066 UNC13AQ9UPW8 1703 aa32.76■■■□□ 2.83
HLA-DPA1-245ENST00000463066 PABPN1Q86U42 306 aaKnown RBP eCLIP32.73■■■□□ 2.83
HLA-DPA1-245ENST00000463066 SCRIBQ14160 1630 aa32.68■■■□□ 2.82
HLA-DPA1-245ENST00000463066 BICRAQ9NZM4 1560 aa32.59■■■□□ 2.81
HLA-DPA1-245ENST00000463066 SHROOM4Q9ULL8 1493 aa32.08■■■□□ 2.73
HLA-DPA1-245ENST00000463066 DNAJC5BQ9UF47 199 aa32.03■■■□□ 2.72
HLA-DPA1-245ENST00000463066 EIF4G1Q04637 1599 aaKnown RBP31.68■■■□□ 2.66
HLA-DPA1-245ENST00000463066 CC2D2AQ9P2K1 1620 aa31.53■■■□□ 2.64
HLA-DPA1-245ENST00000463066 CECR2Q9BXF3 1484 aa31.46■■■□□ 2.63
HLA-DPA1-245ENST00000463066 SMARCA4P51532 1647 aa31.2■■■□□ 2.59
HLA-DPA1-245ENST00000463066 BAZ1AQ9NRL2 1556 aaPredicted RBP31.16■■■□□ 2.58
HLA-DPA1-245ENST00000463066 MROH2BQ7Z745 1585 aa31.11■■■□□ 2.57
HLA-DPA1-245ENST00000463066 ATAD2BQ9ULI0 1458 aa31.04■■■□□ 2.56
HLA-DPA1-245ENST00000463066 NCAPD3P42695 1498 aa30.96■■■□□ 2.55
HLA-DPA1-245ENST00000463066 SMARCA2P51531 1590 aa30.92■■■□□ 2.54
HLA-DPA1-245ENST00000463066 PEG3Q9GZU2 1588 aa30.84■■■□□ 2.53
HLA-DPA1-245ENST00000463066 RSF1Q96T23 1441 aaPredicted RBP30.8■■■□□ 2.52
HLA-DPA1-245ENST00000463066 HMGXB3Q12766 1538 aa30.78■■■□□ 2.52
HLA-DPA1-245ENST00000463066 BAZ1BQ9UIG0 1483 aaKnown RBP30.76■■■□□ 2.52
HLA-DPA1-245ENST00000463066 WIZO95785 1651 aa30.74■■■□□ 2.51
HLA-DPA1-245ENST00000463066 TOP2AP11388 1531 aaKnown RBP30.39■■■□□ 2.46
HLA-DPA1-245ENST00000463066 NESP48681 1621 aa30.29■■■□□ 2.44
HLA-DPA1-245ENST00000463066 SUPT5HO00267 1087 aaKnown RBP30.2■■■□□ 2.43
HLA-DPA1-245ENST00000463066 CCDC88BA6NC98 1476 aa30.09■■■□□ 2.41
HLA-DPA1-245ENST00000463066 CADPSQ9ULU8 1353 aa30.09■■■□□ 2.41
HLA-DPA1-245ENST00000463066 LAMC3Q9Y6N6 1575 aa30.07■■■□□ 2.4
HLA-DPA1-245ENST00000463066 ERCC6Q03468 1493 aa30.02■■■□□ 2.4
HLA-DPA1-245ENST00000463066 CFTRP13569 1480 aa29.93■■■□□ 2.38
HLA-DPA1-245ENST00000463066 PDS5BQ9NTI5 1447 aa29.89■■■□□ 2.38
HLA-DPA1-245ENST00000463066 KIF21AQ7Z4S6 1674 aa29.82■■■□□ 2.36
HLA-DPA1-245ENST00000463066 FANCD2Q9BXW9 1451 aa29.75■■■□□ 2.35
HLA-DPA1-245ENST00000463066 THOC2Q8NI27 1593 aaKnown RBP29.7■■■□□ 2.35
HLA-DPA1-245ENST00000463066 CEP164Q9UPV0 1460 aa29.68■■■□□ 2.34
HLA-DPA1-245ENST00000463066 MRC2Q9UBG0 1479 aa29.62■■■□□ 2.33
HLA-DPA1-245ENST00000463066 CUX2O14529 1486 aa29.59■■■□□ 2.33
HLA-DPA1-245ENST00000463066 PRDM2Q13029 1718 aa29.57■■■□□ 2.32
HLA-DPA1-245ENST00000463066 WDR62O43379 1518 aa29.49■■■□□ 2.31
HLA-DPA1-245ENST00000463066 URB2Q14146 1524 aaKnown RBP29.49■■■□□ 2.31
HLA-DPA1-245ENST00000463066 TOPBP1Q92547 1522 aa29.3■■■□□ 2.28
HLA-DPA1-245ENST00000463066 DNMBPQ6XZF7 1577 aa29.23■■■□□ 2.27
HLA-DPA1-245ENST00000463066 ABCC8Q09428 1581 aa29.18■■■□□ 2.26
HLA-DPA1-245ENST00000463066 CUX1P39880 1505 aa29.16■■■□□ 2.26
HLA-DPA1-245ENST00000463066 POLA1P09884 1462 aaPredicted RBP29.07■■■□□ 2.24
HLA-DPA1-245ENST00000463066 IFT140Q96RY7 1462 aa29.04■■■□□ 2.24
HLA-DPA1-245ENST00000463066 FGD5Q6ZNL6 1462 aa29.03■■■□□ 2.24
HLA-DPA1-245ENST00000463066 RAD54L2Q9Y4B4 1467 aa29.01■■■□□ 2.23
HLA-DPA1-245ENST00000463066 ZNF608Q9ULD9 1512 aaPredicted RBP29■■■□□ 2.23
HLA-DPA1-245ENST00000463066 WRNQ14191 1432 aaPredicted RBP eCLIP29■■■□□ 2.23
HLA-DPA1-245ENST00000463066 SYNJ1O43426 1573 aa28.95■■■□□ 2.22
HLA-DPA1-245ENST00000463066 SOGA1O94964 1423 aa28.94■■■□□ 2.22
HLA-DPA1-245ENST00000463066 TARBP1Q13395 1621 aaKnown RBP28.94■■■□□ 2.22
HLA-DPA1-245ENST00000463066 TOP2BQ02880 1626 aa28.87■■■□□ 2.21
HLA-DPA1-245ENST00000463066 BIVM-ERCC5R4GMW8 1640 aa28.85■■■□□ 2.21
HLA-DPA1-245ENST00000463066 AQRO60306 1485 aaKnown RBP eCLIP28.85■■■□□ 2.21
HLA-DPA1-245ENST00000463066 TDRD9Q8NDG6 1382 aaKnown RBP28.84■■■□□ 2.21
HLA-DPA1-245ENST00000463066 EIF4G3O43432 1585 aaKnown RBP28.81■■■□□ 2.2
HLA-DPA1-245ENST00000463066 ABCA10Q8WWZ4 1543 aa28.71■■■□□ 2.19
HLA-DPA1-245ENST00000463066 WDR97A6NE52 1622 aa28.7■■■□□ 2.19
HLA-DPA1-245ENST00000463066 DNAJC5Q9H3Z4 198 aa28.62■■■□□ 2.17
HLA-DPA1-245ENST00000463066 GAPVD1Q14C86 1478 aa28.59■■■□□ 2.17
HLA-DPA1-245ENST00000463066 ABCA5Q8WWZ7 1642 aa28.58■■■□□ 2.17
HLA-DPA1-245ENST00000463066 GRIN2BQ13224 1484 aa28.56■■■□□ 2.16
HLA-DPA1-245ENST00000463066 SNAPC4Q5SXM2 1469 aa28.56■■■□□ 2.16
HLA-DPA1-245ENST00000463066 FBLN2P98095 1184 aa28.48■■■□□ 2.15
HLA-DPA1-245ENST00000463066 PBRM1Q86U86 1689 aa28.47■■■□□ 2.15
HLA-DPA1-245ENST00000463066 OSCARQ8IYS5 282 aa28.45■■■□□ 2.14
HLA-DPA1-245ENST00000463066 MAGI1Q96QZ7 1491 aaPredicted RBP28.44■■■□□ 2.14
HLA-DPA1-245ENST00000463066 TRIM41Q8WV44 630 aa28.43■■■□□ 2.14
HLA-DPA1-245ENST00000463066 CHD1O14646 1710 aa28.4■■■□□ 2.14
HLA-DPA1-245ENST00000463066 CHMP7Q8WUX9 453 aaPredicted RBP28.37■■■□□ 2.13
HLA-DPA1-245ENST00000463066 SYNJ2O15056 1496 aa28.35■■■□□ 2.13
HLA-DPA1-245ENST00000463066 KIF27Q86VH2 1401 aa28.35■■■□□ 2.13
HLA-DPA1-245ENST00000463066 ERICH3Q5RHP9 1530 aa28.33■■■□□ 2.13
HLA-DPA1-245ENST00000463066 ADAMTS12P58397 1594 aa28.31■■■□□ 2.12
HLA-DPA1-245ENST00000463066 RUSC2Q8N2Y8 1516 aa28.28■■■□□ 2.12
HLA-DPA1-245ENST00000463066 IGF1RP08069 1367 aa28.28■■■□□ 2.12
HLA-DPA1-245ENST00000463066 FHAD1B1AJZ9 1412 aa28.26■■■□□ 2.12
HLA-DPA1-245ENST00000463066 CHIC1Q5VXU3 224 aa28.24■■■□□ 2.11
HLA-DPA1-245ENST00000463066 GRIN2AQ12879 1464 aa28.21■■■□□ 2.11
HLA-DPA1-245ENST00000463066 CLASP1Q7Z460 1538 aa28.13■■■□□ 2.09
HLA-DPA1-245ENST00000463066 CARMIL1Q5VZK9 1371 aa28.1■■■□□ 2.09
HLA-DPA1-245ENST00000463066 CEP170Q5SW79 1584 aa28.09■■■□□ 2.09
HLA-DPA1-245ENST00000463066 NUP160Q12769 1436 aa28.08■■■□□ 2.09
HLA-DPA1-245ENST00000463066 CUL7Q14999 1698 aa28.07■■■□□ 2.08
HLA-DPA1-245ENST00000463066 ARHGEF11O15085 1522 aa28.01■■■□□ 2.07
HLA-DPA1-245ENST00000463066 RIMBP3CA6NJZ7 1639 aa27.99■■■□□ 2.07
HLA-DPA1-245ENST00000463066 RIMBP3BA6NNM3 1639 aa27.99■■■□□ 2.07
HLA-DPA1-245ENST00000463066 RIMBP3Q9UFD9 1639 aa27.99■■■□□ 2.07
HLA-DPA1-245ENST00000463066 FAM9AQ8IZU1 332 aaPredicted RBP27.96■■■□□ 2.07
HLA-DPA1-245ENST00000463066 RAPGEF2Q9Y4G8 1499 aa27.91■■■□□ 2.06
HLA-DPA1-245ENST00000463066 CSRNP3Q8WYN3 585 aa27.9■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms