RNA–Protein interactions for RNA: ENST00000462613.1

SF3B1-206, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 3

Gene SF3B1, Length 141 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-206ENST00000462613 NISCHQ9Y2I1 1504 aa15.14■□□□□ 0.01
SF3B1-206ENST00000462613 CCDC180Q9P1Z9 1646 aa13.51□□□□□ -0.25
SF3B1-206ENST00000462613 ABCC9O60706 1549 aa13.01□□□□□ -0.33
SF3B1-206ENST00000462613 RB1CC1Q8TDY2 1594 aa12.64□□□□□ -0.39
SF3B1-206ENST00000462613 DCAF8L2P0C7V8 631 aa12.64□□□□□ -0.39
SF3B1-206ENST00000462613 ZCCHC6Q5VYS8 1495 aaKnown RBP12.64□□□□□ -0.39
SF3B1-206ENST00000462613 NACADO15069 1562 aa12.64□□□□□ -0.39
SF3B1-206ENST00000462613 MYO15BQ96JP2 1530 aa12.57□□□□□ -0.4
SF3B1-206ENST00000462613 DCAF1Q9Y4B6 1507 aa12.56□□□□□ -0.4
SF3B1-206ENST00000462613 UNC13AQ9UPW8 1703 aa12.37□□□□□ -0.43
SF3B1-206ENST00000462613 SCRIBQ14160 1630 aa12.28□□□□□ -0.44
SF3B1-206ENST00000462613 BICRAQ9NZM4 1560 aa12.15□□□□□ -0.46
SF3B1-206ENST00000462613 PABPN1Q86U42 306 aaKnown RBP eCLIP12.13□□□□□ -0.47
SF3B1-206ENST00000462613 SHROOM4Q9ULL8 1493 aa12.13□□□□□ -0.47
SF3B1-206ENST00000462613 EIF4G1Q04637 1599 aaKnown RBP11.88□□□□□ -0.51
SF3B1-206ENST00000462613 CC2D2AQ9P2K1 1620 aa11.8□□□□□ -0.52
SF3B1-206ENST00000462613 BAZ1AQ9NRL2 1556 aaPredicted RBP11.79□□□□□ -0.52
SF3B1-206ENST00000462613 SMARCA4P51532 1647 aa11.76□□□□□ -0.53
SF3B1-206ENST00000462613 CECR2Q9BXF3 1484 aa11.72□□□□□ -0.53
SF3B1-206ENST00000462613 DNAJC5BQ9UF47 199 aa11.7□□□□□ -0.54
SF3B1-206ENST00000462613 SMARCA2P51531 1590 aa11.69□□□□□ -0.54
SF3B1-206ENST00000462613 MROH2BQ7Z745 1585 aa11.64□□□□□ -0.55
SF3B1-206ENST00000462613 PEG3Q9GZU2 1588 aa11.62□□□□□ -0.55
SF3B1-206ENST00000462613 ATAD2BQ9ULI0 1458 aa11.62□□□□□ -0.55
SF3B1-206ENST00000462613 HMGXB3Q12766 1538 aa11.6□□□□□ -0.55
SF3B1-206ENST00000462613 NCAPD3P42695 1498 aa11.6□□□□□ -0.55
SF3B1-206ENST00000462613 BAZ1BQ9UIG0 1483 aaKnown RBP11.58□□□□□ -0.56
SF3B1-206ENST00000462613 WIZO95785 1651 aa11.58□□□□□ -0.56
SF3B1-206ENST00000462613 RSF1Q96T23 1441 aaPredicted RBP11.54□□□□□ -0.56
SF3B1-206ENST00000462613 TOP2AP11388 1531 aaKnown RBP11.46□□□□□ -0.57
SF3B1-206ENST00000462613 SUPT5HO00267 1087 aaKnown RBP11.38□□□□□ -0.59
SF3B1-206ENST00000462613 LAMC3Q9Y6N6 1575 aa11.35□□□□□ -0.59
SF3B1-206ENST00000462613 PRDM2Q13029 1718 aa11.32□□□□□ -0.6
SF3B1-206ENST00000462613 CCDC88BA6NC98 1476 aa11.28□□□□□ -0.6
SF3B1-206ENST00000462613 CADPSQ9ULU8 1353 aa11.28□□□□□ -0.6
SF3B1-206ENST00000462613 ERCC6Q03468 1493 aa11.27□□□□□ -0.6
SF3B1-206ENST00000462613 NESP48681 1621 aa11.26□□□□□ -0.61
SF3B1-206ENST00000462613 PDS5BQ9NTI5 1447 aa11.25□□□□□ -0.61
SF3B1-206ENST00000462613 KIF21AQ7Z4S6 1674 aa11.23□□□□□ -0.61
SF3B1-206ENST00000462613 CFTRP13569 1480 aa11.22□□□□□ -0.61
SF3B1-206ENST00000462613 CEP164Q9UPV0 1460 aa11.17□□□□□ -0.62
SF3B1-206ENST00000462613 FANCD2Q9BXW9 1451 aa11.16□□□□□ -0.62
SF3B1-206ENST00000462613 THOC2Q8NI27 1593 aaKnown RBP11.11□□□□□ -0.63
SF3B1-206ENST00000462613 MRC2Q9UBG0 1479 aa11.11□□□□□ -0.63
SF3B1-206ENST00000462613 CUX2O14529 1486 aa11.09□□□□□ -0.63
SF3B1-206ENST00000462613 ABCC8Q09428 1581 aa11.07□□□□□ -0.64
SF3B1-206ENST00000462613 WDR62O43379 1518 aa11.06□□□□□ -0.64
SF3B1-206ENST00000462613 DNMBPQ6XZF7 1577 aa11.03□□□□□ -0.64
SF3B1-206ENST00000462613 URB2Q14146 1524 aaKnown RBP11□□□□□ -0.65
SF3B1-206ENST00000462613 TOPBP1Q92547 1522 aa10.99□□□□□ -0.65
SF3B1-206ENST00000462613 BIVM-ERCC5R4GMW8 1640 aa10.94□□□□□ -0.66
SF3B1-206ENST00000462613 WRNQ14191 1432 aaPredicted RBP eCLIP10.93□□□□□ -0.66
SF3B1-206ENST00000462613 CUX1P39880 1505 aa10.93□□□□□ -0.66
SF3B1-206ENST00000462613 TOP2BQ02880 1626 aa10.91□□□□□ -0.66
SF3B1-206ENST00000462613 IFT140Q96RY7 1462 aa10.91□□□□□ -0.66
SF3B1-206ENST00000462613 FGD5Q6ZNL6 1462 aa10.9□□□□□ -0.66
SF3B1-206ENST00000462613 POLA1P09884 1462 aaPredicted RBP10.89□□□□□ -0.67
SF3B1-206ENST00000462613 SYNJ1O43426 1573 aa10.88□□□□□ -0.67
SF3B1-206ENST00000462613 WDR97A6NE52 1622 aa10.87□□□□□ -0.67
SF3B1-206ENST00000462613 SOGA1O94964 1423 aa10.86□□□□□ -0.67
SF3B1-206ENST00000462613 TARBP1Q13395 1621 aaKnown RBP10.86□□□□□ -0.67
SF3B1-206ENST00000462613 EIF4G3O43432 1585 aaKnown RBP10.83□□□□□ -0.68
SF3B1-206ENST00000462613 RAD54L2Q9Y4B4 1467 aa10.82□□□□□ -0.68
SF3B1-206ENST00000462613 PBRM1Q86U86 1689 aa10.8□□□□□ -0.68
SF3B1-206ENST00000462613 ABCA10Q8WWZ4 1543 aa10.79□□□□□ -0.68
SF3B1-206ENST00000462613 ZNF608Q9ULD9 1512 aaPredicted RBP10.79□□□□□ -0.68
SF3B1-206ENST00000462613 TRIM41Q8WV44 630 aa10.78□□□□□ -0.68
SF3B1-206ENST00000462613 ABCA5Q8WWZ7 1642 aa10.76□□□□□ -0.69
SF3B1-206ENST00000462613 GAPVD1Q14C86 1478 aa10.76□□□□□ -0.69
SF3B1-206ENST00000462613 TDRD9Q8NDG6 1382 aaKnown RBP10.76□□□□□ -0.69
SF3B1-206ENST00000462613 AQRO60306 1485 aaKnown RBP eCLIP10.75□□□□□ -0.691e-6■□□□□ 10.8
SF3B1-206ENST00000462613 GRIN2BQ13224 1484 aa10.74□□□□□ -0.69
SF3B1-206ENST00000462613 KIF27Q86VH2 1401 aa10.73□□□□□ -0.69
SF3B1-206ENST00000462613 MAGI1Q96QZ7 1491 aaPredicted RBP10.72□□□□□ -0.69
SF3B1-206ENST00000462613 CHD1O14646 1710 aa10.72□□□□□ -0.69
SF3B1-206ENST00000462613 ERICH3Q5RHP9 1530 aa10.7□□□□□ -0.7
SF3B1-206ENST00000462613 SNAPC4Q5SXM2 1469 aa10.69□□□□□ -0.7
SF3B1-206ENST00000462613 CUL7Q14999 1698 aa10.69□□□□□ -0.7
SF3B1-206ENST00000462613 ADAMTS12P58397 1594 aa10.66□□□□□ -0.7
SF3B1-206ENST00000462613 FBLN2P98095 1184 aa10.66□□□□□ -0.7
SF3B1-206ENST00000462613 SYNJ2O15056 1496 aa10.66□□□□□ -0.7
SF3B1-206ENST00000462613 CHIC1Q5VXU3 224 aa10.65□□□□□ -0.7
SF3B1-206ENST00000462613 CHMP7Q8WUX9 453 aaPredicted RBP10.65□□□□□ -0.7
SF3B1-206ENST00000462613 OSCARQ8IYS5 282 aa10.63□□□□□ -0.71
SF3B1-206ENST00000462613 FHAD1B1AJZ9 1412 aa10.63□□□□□ -0.71
SF3B1-206ENST00000462613 EEA1Q15075 1411 aa10.62□□□□□ -0.71
SF3B1-206ENST00000462613 GRIN2AQ12879 1464 aa10.6□□□□□ -0.71
SF3B1-206ENST00000462613 IGF1RP08069 1367 aa10.58□□□□□ -0.72
SF3B1-206ENST00000462613 CARMIL1Q5VZK9 1371 aa10.57□□□□□ -0.72
SF3B1-206ENST00000462613 RUSC2Q8N2Y8 1516 aa10.56□□□□□ -0.72
SF3B1-206ENST00000462613 RAPGEF2Q9Y4G8 1499 aa10.55□□□□□ -0.72
SF3B1-206ENST00000462613 DNAJC5Q9H3Z4 198 aa10.54□□□□□ -0.72
SF3B1-206ENST00000462613 CSRNP3Q8WYN3 585 aa10.53□□□□□ -0.72
SF3B1-206ENST00000462613 CTTNBP2Q8WZ74 1663 aa10.53□□□□□ -0.72
SF3B1-206ENST00000462613 CEP170Q5SW79 1584 aa10.52□□□□□ -0.72
SF3B1-206ENST00000462613 CLASP1Q7Z460 1538 aa10.52□□□□□ -0.73
SF3B1-206ENST00000462613 NUP160Q12769 1436 aa10.51□□□□□ -0.73
SF3B1-206ENST00000462613 FAM9AQ8IZU1 332 aaPredicted RBP10.51□□□□□ -0.73
SF3B1-206ENST00000462613 KIF21BO75037 1637 aa10.5□□□□□ -0.73
SF3B1-206ENST00000462613 PRXQ9BXM0 1461 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms