RNA–Protein interactions for RNA: ENST00000462207.1

PBRM1-219, Transcript of polybromo 1, humanhuman

TSL 2

Gene PBRM1, Length 1,921 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PBRM1-219ENST00000462207 NISCHQ9Y2I1 1504 aa31.74■■■□□ 2.67
PBRM1-219ENST00000462207 CCDC180Q9P1Z9 1646 aa27.92■■■□□ 2.06
PBRM1-219ENST00000462207 ABCC9O60706 1549 aa26.87■■□□□ 1.89
PBRM1-219ENST00000462207 ZCCHC6Q5VYS8 1495 aaKnown RBP26.58■■□□□ 1.85
PBRM1-219ENST00000462207 DCAF8L2P0C7V8 631 aa26.32■■□□□ 1.8
PBRM1-219ENST00000462207 DCAF1Q9Y4B6 1507 aa26.22■■□□□ 1.79
PBRM1-219ENST00000462207 NACADO15069 1562 aa26.1■■□□□ 1.77
PBRM1-219ENST00000462207 MYO15BQ96JP2 1530 aa26.09■■□□□ 1.77
PBRM1-219ENST00000462207 RB1CC1Q8TDY2 1594 aa26■■□□□ 1.75
PBRM1-219ENST00000462207 SCRIBQ14160 1630 aa25.64■■□□□ 1.7
PBRM1-219ENST00000462207 SHROOM4Q9ULL8 1493 aa25.56■■□□□ 1.68
PBRM1-219ENST00000462207 UNC13AQ9UPW8 1703 aa25.5■■□□□ 1.67
PBRM1-219ENST00000462207 BICRAQ9NZM4 1560 aa25.27■■□□□ 1.64
PBRM1-219ENST00000462207 PABPN1Q86U42 306 aaKnown RBP eCLIP25.21■■□□□ 1.63
PBRM1-219ENST00000462207 CECR2Q9BXF3 1484 aa24.73■■□□□ 1.55
PBRM1-219ENST00000462207 BAZ1AQ9NRL2 1556 aaPredicted RBP24.54■■□□□ 1.52
PBRM1-219ENST00000462207 EIF4G1Q04637 1599 aaKnown RBP24.53■■□□□ 1.52
PBRM1-219ENST00000462207 SMARCA4P51532 1647 aa24.53■■□□□ 1.52
PBRM1-219ENST00000462207 MROH2BQ7Z745 1585 aa24.52■■□□□ 1.52
PBRM1-219ENST00000462207 RSF1Q96T23 1441 aaPredicted RBP24.42■■□□□ 1.5
PBRM1-219ENST00000462207 WIZO95785 1651 aa24.31■■□□□ 1.48
PBRM1-219ENST00000462207 CC2D2AQ9P2K1 1620 aa24.3■■□□□ 1.48
PBRM1-219ENST00000462207 SUPT5HO00267 1087 aaKnown RBP24.29■■□□□ 1.48
PBRM1-219ENST00000462207 ATAD2BQ9ULI0 1458 aa24.23■■□□□ 1.47
PBRM1-219ENST00000462207 PEG3Q9GZU2 1588 aa24.22■■□□□ 1.47
PBRM1-219ENST00000462207 SMARCA2P51531 1590 aa24.19■■□□□ 1.46
PBRM1-219ENST00000462207 DNAJC5BQ9UF47 199 aa24.13■■□□□ 1.45
PBRM1-219ENST00000462207 NCAPD3P42695 1498 aa24.08■■□□□ 1.45
PBRM1-219ENST00000462207 BAZ1BQ9UIG0 1483 aaKnown RBP24.06■■□□□ 1.44
PBRM1-219ENST00000462207 TOP2AP11388 1531 aaKnown RBP24.03■■□□□ 1.44
PBRM1-219ENST00000462207 HMGXB3Q12766 1538 aa24.03■■□□□ 1.44
PBRM1-219ENST00000462207 CCDC88BA6NC98 1476 aa23.75■■□□□ 1.39
PBRM1-219ENST00000462207 NESP48681 1621 aa23.44■■□□□ 1.34
PBRM1-219ENST00000462207 CADPSQ9ULU8 1353 aa23.42■■□□□ 1.34
PBRM1-219ENST00000462207 CFTRP13569 1480 aa23.42■■□□□ 1.34
PBRM1-219ENST00000462207 LAMC3Q9Y6N6 1575 aa23.36■■□□□ 1.33
PBRM1-219ENST00000462207 PRDM2Q13029 1718 aa23.29■■□□□ 1.32
PBRM1-219ENST00000462207 FANCD2Q9BXW9 1451 aa23.19■■□□□ 1.3
PBRM1-219ENST00000462207 PDS5BQ9NTI5 1447 aa23.16■■□□□ 1.3
PBRM1-219ENST00000462207 KIF21AQ7Z4S6 1674 aa23.16■■□□□ 1.3
PBRM1-219ENST00000462207 ABCC8Q09428 1581 aa23.13■■□□□ 1.29
PBRM1-219ENST00000462207 CEP164Q9UPV0 1460 aa23.1■■□□□ 1.29
PBRM1-219ENST00000462207 ERCC6Q03468 1493 aa23.06■■□□□ 1.28
PBRM1-219ENST00000462207 WRNQ14191 1432 aaPredicted RBP eCLIP23■■□□□ 1.27
PBRM1-219ENST00000462207 CHIC1Q5VXU3 224 aa22.98■■□□□ 1.27
PBRM1-219ENST00000462207 SYNJ1O43426 1573 aa22.98■■□□□ 1.27
PBRM1-219ENST00000462207 CUX1P39880 1505 aa22.97■■□□□ 1.27
PBRM1-219ENST00000462207 URB2Q14146 1524 aaKnown RBP22.96■■□□□ 1.27
PBRM1-219ENST00000462207 MRC2Q9UBG0 1479 aa22.94■■□□□ 1.26
PBRM1-219ENST00000462207 THOC2Q8NI27 1593 aaKnown RBP22.93■■□□□ 1.26
PBRM1-219ENST00000462207 DNMBPQ6XZF7 1577 aa22.9■■□□□ 1.26
PBRM1-219ENST00000462207 TOPBP1Q92547 1522 aa22.9■■□□□ 1.26
PBRM1-219ENST00000462207 TOP2BQ02880 1626 aa22.89■■□□□ 1.25
PBRM1-219ENST00000462207 BIVM-ERCC5R4GMW8 1640 aa22.89■■□□□ 1.25
PBRM1-219ENST00000462207 WDR62O43379 1518 aa22.85■■□□□ 1.25
PBRM1-219ENST00000462207 TRIM41Q8WV44 630 aa22.84■■□□□ 1.25
PBRM1-219ENST00000462207 FGD5Q6ZNL6 1462 aa22.79■■□□□ 1.24
PBRM1-219ENST00000462207 POLA1P09884 1462 aaPredicted RBP22.75■■□□□ 1.23
PBRM1-219ENST00000462207 CUX2O14529 1486 aa22.67■■□□□ 1.22
PBRM1-219ENST00000462207 RAD54L2Q9Y4B4 1467 aa22.67■■□□□ 1.22
PBRM1-219ENST00000462207 SOGA1O94964 1423 aa22.63■■□□□ 1.21
PBRM1-219ENST00000462207 TARBP1Q13395 1621 aaKnown RBP22.61■■□□□ 1.21
PBRM1-219ENST00000462207 WDR97A6NE52 1622 aa22.57■■□□□ 1.2
PBRM1-219ENST00000462207 IFT140Q96RY7 1462 aa22.56■■□□□ 1.2
PBRM1-219ENST00000462207 ABCA10Q8WWZ4 1543 aa22.55■■□□□ 1.2
PBRM1-219ENST00000462207 RUSC2Q8N2Y8 1516 aa22.53■■□□□ 1.2
PBRM1-219ENST00000462207 ZNF608Q9ULD9 1512 aaPredicted RBP22.5■■□□□ 1.19
PBRM1-219ENST00000462207 TDRD9Q8NDG6 1382 aaKnown RBP22.48■■□□□ 1.19
PBRM1-219ENST00000462207 FAM9AQ8IZU1 332 aaPredicted RBP22.46■■□□□ 1.19
PBRM1-219ENST00000462207 ABCA5Q8WWZ7 1642 aa22.45■■□□□ 1.18
PBRM1-219ENST00000462207 KIF27Q86VH2 1401 aa22.44■■□□□ 1.18
PBRM1-219ENST00000462207 EIF4G3O43432 1585 aaKnown RBP22.42■■□□□ 1.18
PBRM1-219ENST00000462207 AQRO60306 1485 aaKnown RBP eCLIP22.42■■□□□ 1.183e-6■■■□□ 17.7
PBRM1-219ENST00000462207 GAPVD1Q14C86 1478 aa22.39■■□□□ 1.18
PBRM1-219ENST00000462207 EEA1Q15075 1411 aa22.37■■□□□ 1.17
PBRM1-219ENST00000462207 PBRM1Q86U86 1689 aa22.34■■□□□ 1.17
PBRM1-219ENST00000462207 IGF1RP08069 1367 aa22.29■■□□□ 1.16
PBRM1-219ENST00000462207 GRIN2BQ13224 1484 aa22.29■■□□□ 1.16
PBRM1-219ENST00000462207 CSRNP3Q8WYN3 585 aa22.28■■□□□ 1.16
PBRM1-219ENST00000462207 ERICH3Q5RHP9 1530 aa22.28■■□□□ 1.16
PBRM1-219ENST00000462207 SNAPC4Q5SXM2 1469 aa22.23■■□□□ 1.15
PBRM1-219ENST00000462207 CUL7Q14999 1698 aa22.2■■□□□ 1.14
PBRM1-219ENST00000462207 ADAMTS12P58397 1594 aa22.2■■□□□ 1.14
PBRM1-219ENST00000462207 PRXQ9BXM0 1461 aa22.19■■□□□ 1.14
PBRM1-219ENST00000462207 EHMT2Q96KQ7 1210 aa22.18■■□□□ 1.14
PBRM1-219ENST00000462207 CARMIL1Q5VZK9 1371 aa22.17■■□□□ 1.14
PBRM1-219ENST00000462207 MAGI1Q96QZ7 1491 aaPredicted RBP22.16■■□□□ 1.14
PBRM1-219ENST00000462207 KIF21BO75037 1637 aa22.15■■□□□ 1.14
PBRM1-219ENST00000462207 RAPGEF2Q9Y4G8 1499 aa22.13■■□□□ 1.13
PBRM1-219ENST00000462207 FHAD1B1AJZ9 1412 aa22.13■■□□□ 1.13
PBRM1-219ENST00000462207 LOC105371045A0A1W2PR82 267 aa22.09■■□□□ 1.13
PBRM1-219ENST00000462207 SYNJ2O15056 1496 aa22.08■■□□□ 1.12
PBRM1-219ENST00000462207 GOLGA3Q08378 1498 aa22.07■■□□□ 1.12
PBRM1-219ENST00000462207 GRIN2AQ12879 1464 aa22.03■■□□□ 1.12
PBRM1-219ENST00000462207 CHD1O14646 1710 aa22.03■■□□□ 1.12
PBRM1-219ENST00000462207 FBLN2P98095 1184 aa22.02■■□□□ 1.12
PBRM1-219ENST00000462207 CHMP7Q8WUX9 453 aaPredicted RBP22■■□□□ 1.11
PBRM1-219ENST00000462207 UBTFP17480 764 aaKnown RBP21.96■■□□□ 1.11
PBRM1-219ENST00000462207 CEP170Q5SW79 1584 aa21.94■■□□□ 1.1
PBRM1-219ENST00000462207 NUP160Q12769 1436 aa21.9■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 88.3 ms