RNA–Protein interactions for RNA: ENST00000461897.5

COL4A6-204, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best)

Gene COL4A6, Length 1,889 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-204ENST00000461897 NISCHQ9Y2I1 1504 aa27.68■■■□□ 2.02
COL4A6-204ENST00000461897 CCDC180Q9P1Z9 1646 aa24.1■■□□□ 1.45
COL4A6-204ENST00000461897 ZCCHC6Q5VYS8 1495 aaKnown RBP23.29■■□□□ 1.32
COL4A6-204ENST00000461897 DCAF1Q9Y4B6 1507 aa22.87■■□□□ 1.25
COL4A6-204ENST00000461897 DCAF8L2P0C7V8 631 aa22.77■■□□□ 1.24
COL4A6-204ENST00000461897 ABCC9O60706 1549 aa22.72■■□□□ 1.23
COL4A6-204ENST00000461897 SHROOM4Q9ULL8 1493 aa22.65■■□□□ 1.22
COL4A6-204ENST00000461897 MYO15BQ96JP2 1530 aa22.56■■□□□ 1.2
COL4A6-204ENST00000461897 NACADO15069 1562 aa22.4■■□□□ 1.18
COL4A6-204ENST00000461897 SCRIBQ14160 1630 aa22.21■■□□□ 1.15
COL4A6-204ENST00000461897 RB1CC1Q8TDY2 1594 aa22.2■■□□□ 1.14
COL4A6-204ENST00000461897 UNC13AQ9UPW8 1703 aa21.84■■□□□ 1.09
COL4A6-204ENST00000461897 SUPT5HO00267 1087 aaKnown RBP21.78■■□□□ 1.08
COL4A6-204ENST00000461897 BICRAQ9NZM4 1560 aa21.58■■□□□ 1.05
COL4A6-204ENST00000461897 CECR2Q9BXF3 1484 aa21.53■■□□□ 1.04
COL4A6-204ENST00000461897 RSF1Q96T23 1441 aaPredicted RBP21.51■■□□□ 1.03
COL4A6-204ENST00000461897 PABPN1Q86U42 306 aaKnown RBP eCLIP21.43■■□□□ 1.02
COL4A6-204ENST00000461897 MROH2BQ7Z745 1585 aa21.41■■□□□ 1.02
COL4A6-204ENST00000461897 BAZ1AQ9NRL2 1556 aaPredicted RBP21.36■■□□□ 1.01
COL4A6-204ENST00000461897 SMARCA4P51532 1647 aa21.28■■□□□ 1
COL4A6-204ENST00000461897 WIZO95785 1651 aa21.25■□□□□ 0.99
COL4A6-204ENST00000461897 PEG3Q9GZU2 1588 aa21.01■□□□□ 0.95
COL4A6-204ENST00000461897 TOP2AP11388 1531 aaKnown RBP21■□□□□ 0.95
COL4A6-204ENST00000461897 CHIC1Q5VXU3 224 aa20.91■□□□□ 0.94
COL4A6-204ENST00000461897 EIF4G1Q04637 1599 aaKnown RBP20.91■□□□□ 0.94
COL4A6-204ENST00000461897 ATAD2BQ9ULI0 1458 aa20.89■□□□□ 0.93
COL4A6-204ENST00000461897 SMARCA2P51531 1590 aa20.86■□□□□ 0.93
COL4A6-204ENST00000461897 CCDC88BA6NC98 1476 aa20.78■□□□□ 0.92
COL4A6-204ENST00000461897 BAZ1BQ9UIG0 1483 aaKnown RBP20.77■□□□□ 0.91
COL4A6-204ENST00000461897 HMGXB3Q12766 1538 aa20.68■□□□□ 0.9
COL4A6-204ENST00000461897 NCAPD3P42695 1498 aa20.68■□□□□ 0.9
COL4A6-204ENST00000461897 CC2D2AQ9P2K1 1620 aa20.58■□□□□ 0.88
COL4A6-204ENST00000461897 TRIM41Q8WV44 630 aa20.45■□□□□ 0.86
COL4A6-204ENST00000461897 ABCC8Q09428 1581 aa20.42■□□□□ 0.86
COL4A6-204ENST00000461897 HRCP23327 699 aa20.29■□□□□ 0.84
COL4A6-204ENST00000461897 CFTRP13569 1480 aa20.26■□□□□ 0.83
COL4A6-204ENST00000461897 WRNQ14191 1432 aaPredicted RBP eCLIP20.22■□□□□ 0.83
COL4A6-204ENST00000461897 PRDM2Q13029 1718 aa20.19■□□□□ 0.82
COL4A6-204ENST00000461897 SYNJ1O43426 1573 aa20.19■□□□□ 0.82
COL4A6-204ENST00000461897 CADPSQ9ULU8 1353 aa20.15■□□□□ 0.82
COL4A6-204ENST00000461897 LOC105371045A0A1W2PR82 267 aa20.11■□□□□ 0.81
COL4A6-204ENST00000461897 FAM9AQ8IZU1 332 aaPredicted RBP20.11■□□□□ 0.81
COL4A6-204ENST00000461897 TOP2BQ02880 1626 aa20.08■□□□□ 0.8
COL4A6-204ENST00000461897 BIVM-ERCC5R4GMW8 1640 aa20.06■□□□□ 0.8
COL4A6-204ENST00000461897 DNAJC5BQ9UF47 199 aa20.06■□□□□ 0.8
COL4A6-204ENST00000461897 PCGF6Q9BYE7 350 aa20.05■□□□□ 0.8
COL4A6-204ENST00000461897 SOGA1O94964 1423 aa20.02■□□□□ 0.8
COL4A6-204ENST00000461897 CUX1P39880 1505 aa20.02■□□□□ 0.8
COL4A6-204ENST00000461897 NESP48681 1621 aa20■□□□□ 0.79
COL4A6-204ENST00000461897 LAMC3Q9Y6N6 1575 aa19.97■□□□□ 0.79
COL4A6-204ENST00000461897 RUSC2Q8N2Y8 1516 aa19.96■□□□□ 0.79
COL4A6-204ENST00000461897 EEA1Q15075 1411 aa19.94■□□□□ 0.78
COL4A6-204ENST00000461897 FANCD2Q9BXW9 1451 aa19.94■□□□□ 0.78
COL4A6-204ENST00000461897 EHMT2Q96KQ7 1210 aa19.84■□□□□ 0.77
COL4A6-204ENST00000461897 CSRNP3Q8WYN3 585 aa19.82■□□□□ 0.76
COL4A6-204ENST00000461897 TRIM26Q12899 539 aaPredicted RBP19.82■□□□□ 0.76
COL4A6-204ENST00000461897 CEP164Q9UPV0 1460 aa19.81■□□□□ 0.76
COL4A6-204ENST00000461897 DNMBPQ6XZF7 1577 aa19.79■□□□□ 0.76
COL4A6-204ENST00000461897 PDS5BQ9NTI5 1447 aa19.78■□□□□ 0.76
COL4A6-204ENST00000461897 KIF21AQ7Z4S6 1674 aa19.77■□□□□ 0.76
COL4A6-204ENST00000461897 FGD5Q6ZNL6 1462 aa19.77■□□□□ 0.76
COL4A6-204ENST00000461897 TOPBP1Q92547 1522 aa19.75■□□□□ 0.75
COL4A6-204ENST00000461897 KIF21BO75037 1637 aa19.74■□□□□ 0.75
COL4A6-204ENST00000461897 URB2Q14146 1524 aaKnown RBP19.72■□□□□ 0.75
COL4A6-204ENST00000461897 GOLGA3Q08378 1498 aa19.7■□□□□ 0.74
COL4A6-204ENST00000461897 KIF27Q86VH2 1401 aa19.68■□□□□ 0.74
COL4A6-204ENST00000461897 POLA1P09884 1462 aaPredicted RBP19.67■□□□□ 0.74
COL4A6-204ENST00000461897 TNIKQ9UKE5 1360 aa19.64■□□□□ 0.73
COL4A6-204ENST00000461897 CUX2O14529 1486 aa19.64■□□□□ 0.73
COL4A6-204ENST00000461897 PPARGC1BQ86YN6 1023 aaKnown RBP19.63■□□□□ 0.73
COL4A6-204ENST00000461897 RAPGEF2Q9Y4G8 1499 aa19.61■□□□□ 0.73
COL4A6-204ENST00000461897 PRXQ9BXM0 1461 aa19.61■□□□□ 0.73
COL4A6-204ENST00000461897 RAD54L2Q9Y4B4 1467 aa19.6■□□□□ 0.73
COL4A6-204ENST00000461897 ABCA10Q8WWZ4 1543 aa19.59■□□□□ 0.73
COL4A6-204ENST00000461897 ERICH3Q5RHP9 1530 aa19.57■□□□□ 0.72
COL4A6-204ENST00000461897 CEP162Q5TB80 1403 aa19.57■□□□□ 0.72
COL4A6-204ENST00000461897 WDR97A6NE52 1622 aa19.56■□□□□ 0.72
COL4A6-204ENST00000461897 UBTFP17480 764 aaKnown RBP19.56■□□□□ 0.72
COL4A6-204ENST00000461897 MRC2Q9UBG0 1479 aa19.55■□□□□ 0.72
COL4A6-204ENST00000461897 IGF1RP08069 1367 aa19.52■□□□□ 0.71
COL4A6-204ENST00000461897 ZEB1P37275 1124 aaPredicted RBP19.51■□□□□ 0.71
COL4A6-204ENST00000461897 WDR62O43379 1518 aa19.47■□□□□ 0.71
COL4A6-204ENST00000461897 TARBP1Q13395 1621 aaKnown RBP19.47■□□□□ 0.71
COL4A6-204ENST00000461897 ABCA5Q8WWZ7 1642 aa19.45■□□□□ 0.7
COL4A6-204ENST00000461897 ERCC6Q03468 1493 aa19.44■□□□□ 0.7
COL4A6-204ENST00000461897 THOC2Q8NI27 1593 aaKnown RBP19.42■□□□□ 0.7
COL4A6-204ENST00000461897 CARMIL1Q5VZK9 1371 aa19.41■□□□□ 0.7
COL4A6-204ENST00000461897 CLIP1P30622 1438 aa19.38■□□□□ 0.69
COL4A6-204ENST00000461897 TDRD9Q8NDG6 1382 aaKnown RBP19.38■□□□□ 0.69
COL4A6-204ENST00000461897 CUL7Q14999 1698 aa19.38■□□□□ 0.69
COL4A6-204ENST00000461897 GAPVD1Q14C86 1478 aa19.37■□□□□ 0.69
COL4A6-204ENST00000461897 IFT140Q96RY7 1462 aa19.32■□□□□ 0.68
COL4A6-204ENST00000461897 PBRM1Q86U86 1689 aa19.3■□□□□ 0.68
COL4A6-204ENST00000461897 AQRO60306 1485 aaKnown RBP eCLIP19.26■□□□□ 0.67
COL4A6-204ENST00000461897 ZNF608Q9ULD9 1512 aaPredicted RBP19.26■□□□□ 0.67
COL4A6-204ENST00000461897 RANGAP1P46060 587 aaPredicted RBP19.25■□□□□ 0.67
COL4A6-204ENST00000461897 VPS8Q8N3P4 1428 aa19.24■□□□□ 0.67
COL4A6-204ENST00000461897 ARAP1Q96P48 1450 aa19.23■□□□□ 0.67
COL4A6-204ENST00000461897 CTTNBP2Q8WZ74 1663 aa19.2■□□□□ 0.66
COL4A6-204ENST00000461897 EIF4G3O43432 1585 aaKnown RBP19.2■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms