RNA–Protein interactions for RNA: ENST00000461689.5

NEK4-203, Transcript of NIMA related kinase 4, humanhuman

TSL 5

Gene NEK4, Length 2,276 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK4-203ENST00000461689 NISCHQ9Y2I1 1504 aa29.46■■■□□ 2.31
NEK4-203ENST00000461689 CCDC180Q9P1Z9 1646 aa25.4■■□□□ 1.66
NEK4-203ENST00000461689 ZCCHC6Q5VYS8 1495 aaKnown RBP24.8■■□□□ 1.56
NEK4-203ENST00000461689 SHROOM4Q9ULL8 1493 aa24.44■■□□□ 1.5
NEK4-203ENST00000461689 DCAF8L2P0C7V8 631 aa24.42■■□□□ 1.5
NEK4-203ENST00000461689 DCAF1Q9Y4B6 1507 aa24.31■■□□□ 1.48
NEK4-203ENST00000461689 MYO15BQ96JP2 1530 aa23.87■■□□□ 1.41
NEK4-203ENST00000461689 ABCC9O60706 1549 aa23.81■■□□□ 1.4
NEK4-203ENST00000461689 SUPT5HO00267 1087 aaKnown RBP23.77■■□□□ 1.4
NEK4-203ENST00000461689 NACADO15069 1562 aa23.64■■□□□ 1.37
NEK4-203ENST00000461689 SCRIBQ14160 1630 aa23.51■■□□□ 1.35
NEK4-203ENST00000461689 RB1CC1Q8TDY2 1594 aa23.34■■□□□ 1.33
NEK4-203ENST00000461689 RSF1Q96T23 1441 aaPredicted RBP23.05■■□□□ 1.28
NEK4-203ENST00000461689 CHIC1Q5VXU3 224 aa22.92■■□□□ 1.26
NEK4-203ENST00000461689 CECR2Q9BXF3 1484 aa22.9■■□□□ 1.26
NEK4-203ENST00000461689 UNC13AQ9UPW8 1703 aa22.85■■□□□ 1.25
NEK4-203ENST00000461689 MROH2BQ7Z745 1585 aa22.79■■□□□ 1.24
NEK4-203ENST00000461689 BAZ1AQ9NRL2 1556 aaPredicted RBP22.71■■□□□ 1.23
NEK4-203ENST00000461689 PABPN1Q86U42 306 aaKnown RBP eCLIP22.62■■□□□ 1.21
NEK4-203ENST00000461689 BICRAQ9NZM4 1560 aa22.62■■□□□ 1.21
NEK4-203ENST00000461689 WIZO95785 1651 aa22.62■■□□□ 1.21
NEK4-203ENST00000461689 SMARCA4P51532 1647 aa22.53■■□□□ 1.2
NEK4-203ENST00000461689 TOP2AP11388 1531 aaKnown RBP22.36■■□□□ 1.17
NEK4-203ENST00000461689 TRIM41Q8WV44 630 aa22.3■■□□□ 1.16
NEK4-203ENST00000461689 PEG3Q9GZU2 1588 aa22.22■■□□□ 1.15
NEK4-203ENST00000461689 CCDC88BA6NC98 1476 aa22.21■■□□□ 1.15
NEK4-203ENST00000461689 SMARCA2P51531 1590 aa22.17■■□□□ 1.14
NEK4-203ENST00000461689 LOC105371045A0A1W2PR82 267 aa22.11■■□□□ 1.13
NEK4-203ENST00000461689 ATAD2BQ9ULI0 1458 aa22.11■■□□□ 1.13
NEK4-203ENST00000461689 EIF4G1Q04637 1599 aaKnown RBP22.09■■□□□ 1.13
NEK4-203ENST00000461689 BAZ1BQ9UIG0 1483 aaKnown RBP22.01■■□□□ 1.11
NEK4-203ENST00000461689 FAM9AQ8IZU1 332 aaPredicted RBP21.93■■□□□ 1.1
NEK4-203ENST00000461689 NCAPD3P42695 1498 aa21.85■■□□□ 1.09
NEK4-203ENST00000461689 ABCC8Q09428 1581 aa21.85■■□□□ 1.09
NEK4-203ENST00000461689 HMGXB3Q12766 1538 aa21.79■■□□□ 1.08
NEK4-203ENST00000461689 WRNQ14191 1432 aaPredicted RBP eCLIP21.69■■□□□ 1.06
NEK4-203ENST00000461689 EHMT2Q96KQ7 1210 aa21.63■■□□□ 1.05
NEK4-203ENST00000461689 SOGA1O94964 1423 aa21.57■■□□□ 1.04
NEK4-203ENST00000461689 EEA1Q15075 1411 aa21.57■■□□□ 1.04
NEK4-203ENST00000461689 PCGF6Q9BYE7 350 aa21.53■■□□□ 1.04
NEK4-203ENST00000461689 SYNJ1O43426 1573 aa21.53■■□□□ 1.04
NEK4-203ENST00000461689 CC2D2AQ9P2K1 1620 aa21.51■■□□□ 1.03
NEK4-203ENST00000461689 CSRNP3Q8WYN3 585 aa21.51■■□□□ 1.03
NEK4-203ENST00000461689 CFTRP13569 1480 aa21.48■■□□□ 1.03
NEK4-203ENST00000461689 RUSC2Q8N2Y8 1516 aa21.46■■□□□ 1.03
NEK4-203ENST00000461689 TOP2BQ02880 1626 aa21.41■■□□□ 1.02
NEK4-203ENST00000461689 TRIM26Q12899 539 aaPredicted RBP21.4■■□□□ 1.02
NEK4-203ENST00000461689 CADPSQ9ULU8 1353 aa21.36■■□□□ 1.01
NEK4-203ENST00000461689 BIVM-ERCC5R4GMW8 1640 aa21.34■■□□□ 1.01
NEK4-203ENST00000461689 TNIKQ9UKE5 1360 aa21.34■■□□□ 1.01
NEK4-203ENST00000461689 UBTFP17480 764 aaKnown RBP21.31■■□□□ 1
NEK4-203ENST00000461689 GOLGA3Q08378 1498 aa21.29■■□□□ 1
NEK4-203ENST00000461689 PRDM2Q13029 1718 aa21.28■■□□□ 1
NEK4-203ENST00000461689 CUX1P39880 1505 aa21.27■■□□□ 1
NEK4-203ENST00000461689 CEP164Q9UPV0 1460 aa21.25■□□□□ 0.99
NEK4-203ENST00000461689 CEP162Q5TB80 1403 aa21.24■□□□□ 0.99
NEK4-203ENST00000461689 KIF21BO75037 1637 aa21.22■□□□□ 0.99
NEK4-203ENST00000461689 HRCP23327 699 aa21.2■□□□□ 0.98
NEK4-203ENST00000461689 KIF27Q86VH2 1401 aa21.12■□□□□ 0.97
NEK4-203ENST00000461689 FANCD2Q9BXW9 1451 aa21.1■□□□□ 0.97
NEK4-203ENST00000461689 RAPGEF2Q9Y4G8 1499 aa21.09■□□□□ 0.97
NEK4-203ENST00000461689 PPARGC1BQ86YN6 1023 aaKnown RBP21.06■□□□□ 0.96
NEK4-203ENST00000461689 PRXQ9BXM0 1461 aa21.04■□□□□ 0.96
NEK4-203ENST00000461689 NESP48681 1621 aa21.03■□□□□ 0.96
NEK4-203ENST00000461689 ERICH3Q5RHP9 1530 aa21.02■□□□□ 0.95
NEK4-203ENST00000461689 LAMC3Q9Y6N6 1575 aa21■□□□□ 0.95
NEK4-203ENST00000461689 CLIP1P30622 1438 aa21■□□□□ 0.95
NEK4-203ENST00000461689 FGD5Q6ZNL6 1462 aa20.99■□□□□ 0.95
NEK4-203ENST00000461689 DNAJC5BQ9UF47 199 aa20.97■□□□□ 0.95
NEK4-203ENST00000461689 CUX2O14529 1486 aa20.96■□□□□ 0.95
NEK4-203ENST00000461689 DNMBPQ6XZF7 1577 aa20.93■□□□□ 0.94
NEK4-203ENST00000461689 IGF1RP08069 1367 aa20.91■□□□□ 0.94
NEK4-203ENST00000461689 PDS5BQ9NTI5 1447 aa20.9■□□□□ 0.94
NEK4-203ENST00000461689 TOPBP1Q92547 1522 aa20.9■□□□□ 0.94
NEK4-203ENST00000461689 RANGAP1P46060 587 aaPredicted RBP20.87■□□□□ 0.93
NEK4-203ENST00000461689 VPS8Q8N3P4 1428 aa20.85■□□□□ 0.93
NEK4-203ENST00000461689 POLA1P09884 1462 aaPredicted RBP20.84■□□□□ 0.93
NEK4-203ENST00000461689 CARMIL1Q5VZK9 1371 aa20.82■□□□□ 0.92
NEK4-203ENST00000461689 ABCA10Q8WWZ4 1543 aa20.8■□□□□ 0.92
NEK4-203ENST00000461689 RAD54L2Q9Y4B4 1467 aa20.8■□□□□ 0.92
NEK4-203ENST00000461689 TTBK1Q5TCY1 1321 aaPredicted RBP20.8■□□□□ 0.92
NEK4-203ENST00000461689 URB2Q14146 1524 aaKnown RBP20.79■□□□□ 0.92
NEK4-203ENST00000461689 APLP2Q06481 763 aa20.78■□□□□ 0.92
NEK4-203ENST00000461689 ZEB1P37275 1124 aaPredicted RBP20.75■□□□□ 0.91
NEK4-203ENST00000461689 KIF21AQ7Z4S6 1674 aa20.7■□□□□ 0.9
NEK4-203ENST00000461689 ARAP1Q96P48 1450 aa20.69■□□□□ 0.9
NEK4-203ENST00000461689 ARHGAP35Q9NRY4 1499 aa20.63■□□□□ 0.89
NEK4-203ENST00000461689 WDR97A6NE52 1622 aa20.61■□□□□ 0.89
NEK4-203ENST00000461689 TDRD9Q8NDG6 1382 aaKnown RBP20.61■□□□□ 0.89
NEK4-203ENST00000461689 CUL7Q14999 1698 aa20.6■□□□□ 0.89
NEK4-203ENST00000461689 GAPVD1Q14C86 1478 aa20.57■□□□□ 0.88
NEK4-203ENST00000461689 MRC2Q9UBG0 1479 aa20.56■□□□□ 0.88
NEK4-203ENST00000461689 ABCA5Q8WWZ7 1642 aa20.55■□□□□ 0.88
NEK4-203ENST00000461689 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.52■□□□□ 0.88
NEK4-203ENST00000461689 TARBP1Q13395 1621 aaKnown RBP20.52■□□□□ 0.88
NEK4-203ENST00000461689 CCER1Q8TC90 406 aaPredicted RBP20.51■□□□□ 0.87
NEK4-203ENST00000461689 KANK4Q5T7N3 995 aaPredicted RBP20.48■□□□□ 0.87
NEK4-203ENST00000461689 FHAD1B1AJZ9 1412 aa20.43■□□□□ 0.86
NEK4-203ENST00000461689 CTTNBP2Q8WZ74 1663 aa20.42■□□□□ 0.86
NEK4-203ENST00000461689 P3H3Q8IVL6 736 aa20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms