RNA–Protein interactions for RNA: ENST00000461343.1

LSG1-205, Transcript of large 60S subunit nuclear export GTPase 1, humanhuman

TSL 2

Gene LSG1, Length 428 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSG1-205ENST00000461343 NISCHQ9Y2I1 1504 aa16.83■□□□□ 0.28
LSG1-205ENST00000461343 CCDC180Q9P1Z9 1646 aa14.81□□□□□ -0.04
LSG1-205ENST00000461343 AEBP2Q6ZN18 517 aaPredicted RBP14.43□□□□□ -0.1
LSG1-205ENST00000461343 ZCCHC6Q5VYS8 1495 aaKnown RBP14.13□□□□□ -0.15
LSG1-205ENST00000461343 DCAF1Q9Y4B6 1507 aa14.05□□□□□ -0.16
LSG1-205ENST00000461343 MYO15BQ96JP2 1530 aa13.95□□□□□ -0.18
LSG1-205ENST00000461343 ABCC9O60706 1549 aa13.82□□□□□ -0.2
LSG1-205ENST00000461343 NACADO15069 1562 aa13.82□□□□□ -0.2
LSG1-205ENST00000461343 DCAF8L2P0C7V8 631 aa13.8□□□□□ -0.2
LSG1-205ENST00000461343 RB1CC1Q8TDY2 1594 aa13.69□□□□□ -0.22
LSG1-205ENST00000461343 SHROOM4Q9ULL8 1493 aa13.48□□□□□ -0.25
LSG1-205ENST00000461343 SCRIBQ14160 1630 aa13.42□□□□□ -0.26
LSG1-205ENST00000461343 CHIC1Q5VXU3 224 aa13.28□□□□□ -0.28
LSG1-205ENST00000461343 UNC13AQ9UPW8 1703 aa13.19□□□□□ -0.3
LSG1-205ENST00000461343 BAZ1AQ9NRL2 1556 aaPredicted RBP13.08□□□□□ -0.32
LSG1-205ENST00000461343 BICRAQ9NZM4 1560 aa13.08□□□□□ -0.32
LSG1-205ENST00000461343 SUPT5HO00267 1087 aaKnown RBP13.03□□□□□ -0.32
LSG1-205ENST00000461343 RSF1Q96T23 1441 aaPredicted RBP12.99□□□□□ -0.33
LSG1-205ENST00000461343 PABPN1Q86U42 306 aaKnown RBP eCLIP12.97□□□□□ -0.33
LSG1-205ENST00000461343 SMARCA4P51532 1647 aa12.94□□□□□ -0.34
LSG1-205ENST00000461343 CECR2Q9BXF3 1484 aa12.92□□□□□ -0.34
LSG1-205ENST00000461343 MROH2BQ7Z745 1585 aa12.9□□□□□ -0.35
LSG1-205ENST00000461343 PEG3Q9GZU2 1588 aa12.86□□□□□ -0.35
LSG1-205ENST00000461343 SMARCA2P51531 1590 aa12.85□□□□□ -0.35
LSG1-205ENST00000461343 TOP2AP11388 1531 aaKnown RBP12.78□□□□□ -0.36
LSG1-205ENST00000461343 EIF4G1Q04637 1599 aaKnown RBP12.77□□□□□ -0.36
LSG1-205ENST00000461343 WIZO95785 1651 aa12.77□□□□□ -0.36
LSG1-205ENST00000461343 ATAD2BQ9ULI0 1458 aa12.73□□□□□ -0.37
LSG1-205ENST00000461343 HMGXB3Q12766 1538 aa12.71□□□□□ -0.38
LSG1-205ENST00000461343 BAZ1BQ9UIG0 1483 aaKnown RBP12.71□□□□□ -0.38
LSG1-205ENST00000461343 NCAPD3P42695 1498 aa12.69□□□□□ -0.38
LSG1-205ENST00000461343 CC2D2AQ9P2K1 1620 aa12.56□□□□□ -0.4
LSG1-205ENST00000461343 CCDC88BA6NC98 1476 aa12.56□□□□□ -0.4
LSG1-205ENST00000461343 TRIM41Q8WV44 630 aa12.39□□□□□ -0.43
LSG1-205ENST00000461343 CFTRP13569 1480 aa12.38□□□□□ -0.43
LSG1-205ENST00000461343 CADPSQ9ULU8 1353 aa12.35□□□□□ -0.43
LSG1-205ENST00000461343 PRDM2Q13029 1718 aa12.34□□□□□ -0.43
LSG1-205ENST00000461343 LAMC3Q9Y6N6 1575 aa12.3□□□□□ -0.44
LSG1-205ENST00000461343 WRNQ14191 1432 aaPredicted RBP eCLIP12.29□□□□□ -0.44
LSG1-205ENST00000461343 EEA1Q15075 1411 aa12.26□□□□□ -0.45
LSG1-205ENST00000461343 PDS5BQ9NTI5 1447 aa12.24□□□□□ -0.45
LSG1-205ENST00000461343 ABCC8Q09428 1581 aa12.23□□□□□ -0.45
LSG1-205ENST00000461343 SENP3Q9H4L4 574 aaPredicted RBP12.23□□□□□ -0.45
LSG1-205ENST00000461343 TOP2BQ02880 1626 aa12.2□□□□□ -0.46
LSG1-205ENST00000461343 FANCD2Q9BXW9 1451 aa12.19□□□□□ -0.46
LSG1-205ENST00000461343 BIVM-ERCC5R4GMW8 1640 aa12.19□□□□□ -0.46
LSG1-205ENST00000461343 CEP164Q9UPV0 1460 aa12.16□□□□□ -0.46
LSG1-205ENST00000461343 SYNJ1O43426 1573 aa12.13□□□□□ -0.47
LSG1-205ENST00000461343 DNMBPQ6XZF7 1577 aa12.1□□□□□ -0.47
LSG1-205ENST00000461343 PHF23Q9BUL5 403 aaPredicted RBP12.09□□□□□ -0.47
LSG1-205ENST00000461343 CUX1P39880 1505 aa12.09□□□□□ -0.47
LSG1-205ENST00000461343 DNAJC5BQ9UF47 199 aa12.06□□□□□ -0.48
LSG1-205ENST00000461343 NESP48681 1621 aa12.06□□□□□ -0.48
LSG1-205ENST00000461343 KIF27Q86VH2 1401 aa12.05□□□□□ -0.48
LSG1-205ENST00000461343 TOPBP1Q92547 1522 aa12.03□□□□□ -0.48
LSG1-205ENST00000461343 CSRNP3Q8WYN3 585 aa12.03□□□□□ -0.48
LSG1-205ENST00000461343 MRC2Q9UBG0 1479 aa12.02□□□□□ -0.48
LSG1-205ENST00000461343 ERCC6Q03468 1493 aa12.01□□□□□ -0.49
LSG1-205ENST00000461343 FGD5Q6ZNL6 1462 aa12□□□□□ -0.49
LSG1-205ENST00000461343 KIF21AQ7Z4S6 1674 aa11.98□□□□□ -0.49
LSG1-205ENST00000461343 SOGA1O94964 1423 aa11.98□□□□□ -0.49
LSG1-205ENST00000461343 FAM9AQ8IZU1 332 aaPredicted RBP11.98□□□□□ -0.49
LSG1-205ENST00000461343 KIF21BO75037 1637 aa11.97□□□□□ -0.49
LSG1-205ENST00000461343 GOLGA3Q08378 1498 aa11.97□□□□□ -0.49
LSG1-205ENST00000461343 WDR97A6NE52 1622 aa11.97□□□□□ -0.49
LSG1-205ENST00000461343 ABCA10Q8WWZ4 1543 aa11.96□□□□□ -0.49
LSG1-205ENST00000461343 URB2Q14146 1524 aaKnown RBP11.96□□□□□ -0.5
LSG1-205ENST00000461343 POLA1P09884 1462 aaPredicted RBP11.95□□□□□ -0.5
LSG1-205ENST00000461343 ERICH3Q5RHP9 1530 aa11.95□□□□□ -0.5
LSG1-205ENST00000461343 WDR62O43379 1518 aa11.94□□□□□ -0.5
LSG1-205ENST00000461343 CUX2O14529 1486 aa11.94□□□□□ -0.5
LSG1-205ENST00000461343 TNIKQ9UKE5 1360 aa11.91□□□□□ -0.5
LSG1-205ENST00000461343 IFT140Q96RY7 1462 aa11.9□□□□□ -0.5
LSG1-205ENST00000461343 CUL7Q14999 1698 aa11.88□□□□□ -0.51
LSG1-205ENST00000461343 PRXQ9BXM0 1461 aa11.88□□□□□ -0.51
LSG1-205ENST00000461343 LOC105371045A0A1W2PR82 267 aa11.87□□□□□ -0.51
LSG1-205ENST00000461343 UBTFP17480 764 aaKnown RBP11.87□□□□□ -0.51
LSG1-205ENST00000461343 RUSC2Q8N2Y8 1516 aa11.86□□□□□ -0.51
LSG1-205ENST00000461343 THOC2Q8NI27 1593 aaKnown RBP11.84□□□□□ -0.51
LSG1-205ENST00000461343 IGF1RP08069 1367 aa11.84□□□□□ -0.51
LSG1-205ENST00000461343 GAPVD1Q14C86 1478 aa11.83□□□□□ -0.52
LSG1-205ENST00000461343 RAPGEF2Q9Y4G8 1499 aa11.83□□□□□ -0.52
LSG1-205ENST00000461343 RAD54L2Q9Y4B4 1467 aa11.83□□□□□ -0.52
LSG1-205ENST00000461343 TARBP1Q13395 1621 aaKnown RBP11.82□□□□□ -0.52
LSG1-205ENST00000461343 ABCA5Q8WWZ7 1642 aa11.82□□□□□ -0.52
LSG1-205ENST00000461343 CARMIL1Q5VZK9 1371 aa11.82□□□□□ -0.52
LSG1-205ENST00000461343 GRIN2BQ13224 1484 aa11.79□□□□□ -0.52
LSG1-205ENST00000461343 CEP162Q5TB80 1403 aa11.78□□□□□ -0.52
LSG1-205ENST00000461343 POTEDQ86YR6 584 aa11.75□□□□□ -0.53
LSG1-205ENST00000461343 TDRD9Q8NDG6 1382 aaKnown RBP11.75□□□□□ -0.53
LSG1-205ENST00000461343 FHAD1B1AJZ9 1412 aa11.75□□□□□ -0.53
LSG1-205ENST00000461343 CLIP1P30622 1438 aa11.74□□□□□ -0.53
LSG1-205ENST00000461343 PBRM1Q86U86 1689 aa11.73□□□□□ -0.53
LSG1-205ENST00000461343 MAGI1Q96QZ7 1491 aaPredicted RBP11.73□□□□□ -0.53
LSG1-205ENST00000461343 EHMT2Q96KQ7 1210 aa11.69□□□□□ -0.54
LSG1-205ENST00000461343 EIF4G3O43432 1585 aaKnown RBP11.69□□□□□ -0.54
LSG1-205ENST00000461343 ADAMTS12P58397 1594 aa11.68□□□□□ -0.54
LSG1-205ENST00000461343 EFCAB5A4FU69 1503 aa11.68□□□□□ -0.54
LSG1-205ENST00000461343 AQRO60306 1485 aaKnown RBP eCLIP11.67□□□□□ -0.54
LSG1-205ENST00000461343 CTTNBP2Q8WZ74 1663 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms