RNA–Protein interactions for RNA: ENST00000460826.1

HDLBP-229, Transcript of high density lipoprotein binding protein, humanhuman

TSL 2

Gene HDLBP, Length 442 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDLBP-229ENST00000460826 NISCHQ9Y2I1 1504 aa33.74■■■□□ 2.99
HDLBP-229ENST00000460826 CCDC180Q9P1Z9 1646 aa29.9■■■□□ 2.38
HDLBP-229ENST00000460826 ABCC9O60706 1549 aa29.04■■■□□ 2.24
HDLBP-229ENST00000460826 ZCCHC6Q5VYS8 1495 aaKnown RBP28.15■■■□□ 2.1
HDLBP-229ENST00000460826 DCAF8L2P0C7V8 631 aa28.06■■■□□ 2.08
HDLBP-229ENST00000460826 NACADO15069 1562 aa28.02■■■□□ 2.08
HDLBP-229ENST00000460826 RB1CC1Q8TDY2 1594 aa28.01■■■□□ 2.07
HDLBP-229ENST00000460826 MYO15BQ96JP2 1530 aa27.91■■■□□ 2.06
HDLBP-229ENST00000460826 DCAF1Q9Y4B6 1507 aa27.89■■■□□ 2.06
HDLBP-229ENST00000460826 UNC13AQ9UPW8 1703 aa27.5■■□□□ 1.99
HDLBP-229ENST00000460826 SCRIBQ14160 1630 aa27.34■■□□□ 1.97
HDLBP-229ENST00000460826 BICRAQ9NZM4 1560 aa27.22■■□□□ 1.95
HDLBP-229ENST00000460826 PABPN1Q86U42 306 aaKnown RBP eCLIP27.17■■□□□ 1.94
HDLBP-229ENST00000460826 SHROOM4Q9ULL8 1493 aa26.84■■□□□ 1.89
HDLBP-229ENST00000460826 DNAJC5BQ9UF47 199 aa26.47■■□□□ 1.83
HDLBP-229ENST00000460826 EIF4G1Q04637 1599 aaKnown RBP26.45■■□□□ 1.82
HDLBP-229ENST00000460826 CECR2Q9BXF3 1484 aa26.3■■□□□ 1.8
HDLBP-229ENST00000460826 CC2D2AQ9P2K1 1620 aa26.29■■□□□ 1.8
HDLBP-229ENST00000460826 SMARCA4P51532 1647 aa26.15■■□□□ 1.78
HDLBP-229ENST00000460826 BAZ1AQ9NRL2 1556 aaPredicted RBP26.12■■□□□ 1.77
HDLBP-229ENST00000460826 MROH2BQ7Z745 1585 aa26.03■■□□□ 1.76
HDLBP-229ENST00000460826 ATAD2BQ9ULI0 1458 aa25.92■■□□□ 1.74
HDLBP-229ENST00000460826 SMARCA2P51531 1590 aa25.88■■□□□ 1.73
HDLBP-229ENST00000460826 PEG3Q9GZU2 1588 aa25.86■■□□□ 1.73
HDLBP-229ENST00000460826 NCAPD3P42695 1498 aa25.85■■□□□ 1.73
HDLBP-229ENST00000460826 WIZO95785 1651 aa25.8■■□□□ 1.72
HDLBP-229ENST00000460826 RSF1Q96T23 1441 aaPredicted RBP25.8■■□□□ 1.72
HDLBP-229ENST00000460826 HMGXB3Q12766 1538 aa25.76■■□□□ 1.71
HDLBP-229ENST00000460826 BAZ1BQ9UIG0 1483 aaKnown RBP25.72■■□□□ 1.71
HDLBP-229ENST00000460826 TOP2AP11388 1531 aaKnown RBP25.48■■□□□ 1.67
HDLBP-229ENST00000460826 SUPT5HO00267 1087 aaKnown RBP25.31■■□□□ 1.64
HDLBP-229ENST00000460826 NESP48681 1621 aa25.23■■□□□ 1.63
HDLBP-229ENST00000460826 CCDC88BA6NC98 1476 aa25.19■■□□□ 1.62
HDLBP-229ENST00000460826 LAMC3Q9Y6N6 1575 aa25.14■■□□□ 1.62
HDLBP-229ENST00000460826 CADPSQ9ULU8 1353 aa25.1■■□□□ 1.61
HDLBP-229ENST00000460826 CFTRP13569 1480 aa25.02■■□□□ 1.6
HDLBP-229ENST00000460826 KIF21AQ7Z4S6 1674 aa24.97■■□□□ 1.59
HDLBP-229ENST00000460826 ERCC6Q03468 1493 aa24.97■■□□□ 1.59
HDLBP-229ENST00000460826 PRDM2Q13029 1718 aa24.93■■□□□ 1.58
HDLBP-229ENST00000460826 PDS5BQ9NTI5 1447 aa24.93■■□□□ 1.58
HDLBP-229ENST00000460826 FANCD2Q9BXW9 1451 aa24.83■■□□□ 1.57
HDLBP-229ENST00000460826 THOC2Q8NI27 1593 aaKnown RBP24.8■■□□□ 1.56
HDLBP-229ENST00000460826 CEP164Q9UPV0 1460 aa24.77■■□□□ 1.56
HDLBP-229ENST00000460826 MRC2Q9UBG0 1479 aa24.7■■□□□ 1.55
HDLBP-229ENST00000460826 WDR62O43379 1518 aa24.62■■□□□ 1.53
HDLBP-229ENST00000460826 URB2Q14146 1524 aaKnown RBP24.61■■□□□ 1.53
HDLBP-229ENST00000460826 CUX2O14529 1486 aa24.61■■□□□ 1.53
HDLBP-229ENST00000460826 TOPBP1Q92547 1522 aa24.49■■□□□ 1.51
HDLBP-229ENST00000460826 DNMBPQ6XZF7 1577 aa24.48■■□□□ 1.51
HDLBP-229ENST00000460826 ABCC8Q09428 1581 aa24.42■■□□□ 1.5
HDLBP-229ENST00000460826 CUX1P39880 1505 aa24.4■■□□□ 1.5
HDLBP-229ENST00000460826 WRNQ14191 1432 aaPredicted RBP eCLIP24.29■■□□□ 1.48
HDLBP-229ENST00000460826 POLA1P09884 1462 aaPredicted RBP24.29■■□□□ 1.48
HDLBP-229ENST00000460826 SYNJ1O43426 1573 aa24.29■■□□□ 1.48
HDLBP-229ENST00000460826 FGD5Q6ZNL6 1462 aa24.27■■□□□ 1.48
HDLBP-229ENST00000460826 BIVM-ERCC5R4GMW8 1640 aa24.26■■□□□ 1.47
HDLBP-229ENST00000460826 TOP2BQ02880 1626 aa24.24■■□□□ 1.47
HDLBP-229ENST00000460826 IFT140Q96RY7 1462 aa24.24■■□□□ 1.47
HDLBP-229ENST00000460826 TARBP1Q13395 1621 aaKnown RBP24.23■■□□□ 1.47
HDLBP-229ENST00000460826 RAD54L2Q9Y4B4 1467 aa24.2■■□□□ 1.47
HDLBP-229ENST00000460826 ZNF608Q9ULD9 1512 aaPredicted RBP24.17■■□□□ 1.46
HDLBP-229ENST00000460826 SOGA1O94964 1423 aa24.17■■□□□ 1.46
HDLBP-229ENST00000460826 WDR97A6NE52 1622 aa24.11■■□□□ 1.45
HDLBP-229ENST00000460826 EIF4G3O43432 1585 aaKnown RBP24.08■■□□□ 1.45
HDLBP-229ENST00000460826 AQRO60306 1485 aaKnown RBP eCLIP24.04■■□□□ 1.442e-7■□□□□ 9
HDLBP-229ENST00000460826 ABCA10Q8WWZ4 1543 aa24.03■■□□□ 1.44
HDLBP-229ENST00000460826 TDRD9Q8NDG6 1382 aaKnown RBP24.03■■□□□ 1.44
HDLBP-229ENST00000460826 ABCA5Q8WWZ7 1642 aa23.95■■□□□ 1.42
HDLBP-229ENST00000460826 PBRM1Q86U86 1689 aa23.91■■□□□ 1.42
HDLBP-229ENST00000460826 GAPVD1Q14C86 1478 aa23.9■■□□□ 1.42
HDLBP-229ENST00000460826 GRIN2BQ13224 1484 aa23.86■■□□□ 1.41
HDLBP-229ENST00000460826 TRIM41Q8WV44 630 aa23.85■■□□□ 1.41
HDLBP-229ENST00000460826 SNAPC4Q5SXM2 1469 aa23.82■■□□□ 1.4
HDLBP-229ENST00000460826 CHD1O14646 1710 aa23.78■■□□□ 1.4
HDLBP-229ENST00000460826 MAGI1Q96QZ7 1491 aaPredicted RBP23.76■■□□□ 1.39
HDLBP-229ENST00000460826 CHIC1Q5VXU3 224 aa23.76■■□□□ 1.39
HDLBP-229ENST00000460826 KIF27Q86VH2 1401 aa23.74■■□□□ 1.39
HDLBP-229ENST00000460826 ERICH3Q5RHP9 1530 aa23.74■■□□□ 1.39
HDLBP-229ENST00000460826 ADAMTS12P58397 1594 aa23.7■■□□□ 1.38
HDLBP-229ENST00000460826 RUSC2Q8N2Y8 1516 aa23.69■■□□□ 1.38
HDLBP-229ENST00000460826 SYNJ2O15056 1496 aa23.68■■□□□ 1.38
HDLBP-229ENST00000460826 FBLN2P98095 1184 aa23.67■■□□□ 1.38
HDLBP-229ENST00000460826 IGF1RP08069 1367 aa23.65■■□□□ 1.38
HDLBP-229ENST00000460826 FHAD1B1AJZ9 1412 aa23.62■■□□□ 1.37
HDLBP-229ENST00000460826 CHMP7Q8WUX9 453 aaPredicted RBP23.62■■□□□ 1.37
HDLBP-229ENST00000460826 OSCARQ8IYS5 282 aa23.61■■□□□ 1.37
HDLBP-229ENST00000460826 DNAJC5Q9H3Z4 198 aa23.59■■□□□ 1.37
HDLBP-229ENST00000460826 CUL7Q14999 1698 aa23.58■■□□□ 1.37
HDLBP-229ENST00000460826 GRIN2AQ12879 1464 aa23.56■■□□□ 1.36
HDLBP-229ENST00000460826 CARMIL1Q5VZK9 1371 aa23.5■■□□□ 1.35
HDLBP-229ENST00000460826 CLASP1Q7Z460 1538 aa23.48■■□□□ 1.35
HDLBP-229ENST00000460826 CEP170Q5SW79 1584 aa23.48■■□□□ 1.35
HDLBP-229ENST00000460826 NUP160Q12769 1436 aa23.45■■□□□ 1.34
HDLBP-229ENST00000460826 EEA1Q15075 1411 aa23.42■■□□□ 1.34
HDLBP-229ENST00000460826 FAM9AQ8IZU1 332 aaPredicted RBP23.4■■□□□ 1.34
HDLBP-229ENST00000460826 RAPGEF2Q9Y4G8 1499 aa23.39■■□□□ 1.34
HDLBP-229ENST00000460826 CSRNP3Q8WYN3 585 aa23.38■■□□□ 1.33
HDLBP-229ENST00000460826 PRXQ9BXM0 1461 aa23.37■■□□□ 1.33
HDLBP-229ENST00000460826 RIMBP3CA6NJZ7 1639 aa23.31■■□□□ 1.32
HDLBP-229ENST00000460826 RIMBP3BA6NNM3 1639 aa23.31■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms