RNA–Protein interactions for RNA: ENST00000460235.1

HDAC4-206, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 343 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-206ENST00000460235 NISCHQ9Y2I1 1504 aa28.84■■■□□ 2.21
HDAC4-206ENST00000460235 CCDC180Q9P1Z9 1646 aa25.46■■□□□ 1.67
HDAC4-206ENST00000460235 ABCC9O60706 1549 aa24.45■■□□□ 1.5
HDAC4-206ENST00000460235 ZCCHC6Q5VYS8 1495 aaKnown RBP24.08■■□□□ 1.45
HDAC4-206ENST00000460235 DCAF8L2P0C7V8 631 aa24.02■■□□□ 1.44
HDAC4-206ENST00000460235 DCAF1Q9Y4B6 1507 aa23.94■■□□□ 1.42
HDAC4-206ENST00000460235 MYO15BQ96JP2 1530 aa23.92■■□□□ 1.42
HDAC4-206ENST00000460235 NACADO15069 1562 aa23.9■■□□□ 1.42
HDAC4-206ENST00000460235 RB1CC1Q8TDY2 1594 aa23.82■■□□□ 1.4
HDAC4-206ENST00000460235 SCRIBQ14160 1630 aa23.19■■□□□ 1.3
HDAC4-206ENST00000460235 UNC13AQ9UPW8 1703 aa23.05■■□□□ 1.28
HDAC4-206ENST00000460235 SHROOM4Q9ULL8 1493 aa22.98■■□□□ 1.27
HDAC4-206ENST00000460235 PABPN1Q86U42 306 aaKnown RBP eCLIP22.93■■□□□ 1.26
HDAC4-206ENST00000460235 BICRAQ9NZM4 1560 aa22.9■■□□□ 1.26
HDAC4-206ENST00000460235 BAZ1AQ9NRL2 1556 aaPredicted RBP22.38■■□□□ 1.17
HDAC4-206ENST00000460235 EIF4G1Q04637 1599 aaKnown RBP22.34■■□□□ 1.17
HDAC4-206ENST00000460235 CECR2Q9BXF3 1484 aa22.32■■□□□ 1.16
HDAC4-206ENST00000460235 SMARCA4P51532 1647 aa22.25■■□□□ 1.15
HDAC4-206ENST00000460235 MROH2BQ7Z745 1585 aa22.16■■□□□ 1.14
HDAC4-206ENST00000460235 SMARCA2P51531 1590 aa22.13■■□□□ 1.13
HDAC4-206ENST00000460235 CC2D2AQ9P2K1 1620 aa22.13■■□□□ 1.13
HDAC4-206ENST00000460235 RSF1Q96T23 1441 aaPredicted RBP22.12■■□□□ 1.13
HDAC4-206ENST00000460235 ATAD2BQ9ULI0 1458 aa22.06■■□□□ 1.12
HDAC4-206ENST00000460235 PEG3Q9GZU2 1588 aa22.06■■□□□ 1.12
HDAC4-206ENST00000460235 NCAPD3P42695 1498 aa22.03■■□□□ 1.12
HDAC4-206ENST00000460235 DNAJC5BQ9UF47 199 aa21.96■■□□□ 1.11
HDAC4-206ENST00000460235 SUPT5HO00267 1087 aaKnown RBP21.95■■□□□ 1.1
HDAC4-206ENST00000460235 BAZ1BQ9UIG0 1483 aaKnown RBP21.95■■□□□ 1.1
HDAC4-206ENST00000460235 HMGXB3Q12766 1538 aa21.94■■□□□ 1.1
HDAC4-206ENST00000460235 WIZO95785 1651 aa21.91■■□□□ 1.1
HDAC4-206ENST00000460235 TOP2AP11388 1531 aaKnown RBP21.81■■□□□ 1.08
HDAC4-206ENST00000460235 CCDC88BA6NC98 1476 aa21.53■■□□□ 1.04
HDAC4-206ENST00000460235 CADPSQ9ULU8 1353 aa21.43■■□□□ 1.02
HDAC4-206ENST00000460235 LAMC3Q9Y6N6 1575 aa21.38■■□□□ 1.01
HDAC4-206ENST00000460235 CFTRP13569 1480 aa21.35■■□□□ 1.01
HDAC4-206ENST00000460235 PDS5BQ9NTI5 1447 aa21.3■■□□□ 1
HDAC4-206ENST00000460235 NESP48681 1621 aa21.22■□□□□ 0.99
HDAC4-206ENST00000460235 ERCC6Q03468 1493 aa21.17■□□□□ 0.98
HDAC4-206ENST00000460235 PRDM2Q13029 1718 aa21.15■□□□□ 0.98
HDAC4-206ENST00000460235 FANCD2Q9BXW9 1451 aa21.14■□□□□ 0.98
HDAC4-206ENST00000460235 CEP164Q9UPV0 1460 aa21.11■□□□□ 0.97
HDAC4-206ENST00000460235 ABCC8Q09428 1581 aa21.02■□□□□ 0.95
HDAC4-206ENST00000460235 KIF21AQ7Z4S6 1674 aa20.97■□□□□ 0.95
HDAC4-206ENST00000460235 MRC2Q9UBG0 1479 aa20.97■□□□□ 0.95
HDAC4-206ENST00000460235 WRNQ14191 1432 aaPredicted RBP eCLIP20.91■□□□□ 0.94
HDAC4-206ENST00000460235 DNMBPQ6XZF7 1577 aa20.85■□□□□ 0.93
HDAC4-206ENST00000460235 WDR62O43379 1518 aa20.83■□□□□ 0.93
HDAC4-206ENST00000460235 TOPBP1Q92547 1522 aa20.83■□□□□ 0.92
HDAC4-206ENST00000460235 URB2Q14146 1524 aaKnown RBP20.82■□□□□ 0.92
HDAC4-206ENST00000460235 THOC2Q8NI27 1593 aaKnown RBP20.81■□□□□ 0.92
HDAC4-206ENST00000460235 TRIM41Q8WV44 630 aa20.8■□□□□ 0.92
HDAC4-206ENST00000460235 CUX2O14529 1486 aa20.78■□□□□ 0.92
HDAC4-206ENST00000460235 CUX1P39880 1505 aa20.78■□□□□ 0.92
HDAC4-206ENST00000460235 TOP2BQ02880 1626 aa20.76■□□□□ 0.91
HDAC4-206ENST00000460235 BIVM-ERCC5R4GMW8 1640 aa20.72■□□□□ 0.91
HDAC4-206ENST00000460235 CHIC1Q5VXU3 224 aa20.71■□□□□ 0.91
HDAC4-206ENST00000460235 SYNJ1O43426 1573 aa20.69■□□□□ 0.9
HDAC4-206ENST00000460235 FGD5Q6ZNL6 1462 aa20.69■□□□□ 0.9
HDAC4-206ENST00000460235 SOGA1O94964 1423 aa20.67■□□□□ 0.9
HDAC4-206ENST00000460235 POLA1P09884 1462 aaPredicted RBP20.67■□□□□ 0.9
HDAC4-206ENST00000460235 IFT140Q96RY7 1462 aa20.67■□□□□ 0.9
HDAC4-206ENST00000460235 ABCA10Q8WWZ4 1543 aa20.54■□□□□ 0.88
HDAC4-206ENST00000460235 RAD54L2Q9Y4B4 1467 aa20.53■□□□□ 0.88
HDAC4-206ENST00000460235 WDR97A6NE52 1622 aa20.53■□□□□ 0.88
HDAC4-206ENST00000460235 TARBP1Q13395 1621 aaKnown RBP20.5■□□□□ 0.87
HDAC4-206ENST00000460235 KIF27Q86VH2 1401 aa20.5■□□□□ 0.87
HDAC4-206ENST00000460235 EEA1Q15075 1411 aa20.45■□□□□ 0.86
HDAC4-206ENST00000460235 TDRD9Q8NDG6 1382 aaKnown RBP20.44■□□□□ 0.86
HDAC4-206ENST00000460235 GAPVD1Q14C86 1478 aa20.43■□□□□ 0.86
HDAC4-206ENST00000460235 ZNF608Q9ULD9 1512 aaPredicted RBP20.38■□□□□ 0.85
HDAC4-206ENST00000460235 AQRO60306 1485 aaKnown RBP eCLIP20.38■□□□□ 0.853e-9■■■■■ 37.6
HDAC4-206ENST00000460235 GRIN2BQ13224 1484 aa20.38■□□□□ 0.85
HDAC4-206ENST00000460235 ABCA5Q8WWZ7 1642 aa20.35■□□□□ 0.85
HDAC4-206ENST00000460235 EIF4G3O43432 1585 aaKnown RBP20.34■□□□□ 0.85
HDAC4-206ENST00000460235 ERICH3Q5RHP9 1530 aa20.33■□□□□ 0.85
HDAC4-206ENST00000460235 CSRNP3Q8WYN3 585 aa20.31■□□□□ 0.84
HDAC4-206ENST00000460235 MAGI1Q96QZ7 1491 aaPredicted RBP20.29■□□□□ 0.84
HDAC4-206ENST00000460235 IGF1RP08069 1367 aa20.28■□□□□ 0.84
HDAC4-206ENST00000460235 PBRM1Q86U86 1689 aa20.24■□□□□ 0.83
HDAC4-206ENST00000460235 FAM9AQ8IZU1 332 aaPredicted RBP20.24■□□□□ 0.83
HDAC4-206ENST00000460235 FHAD1B1AJZ9 1412 aa20.23■□□□□ 0.83
HDAC4-206ENST00000460235 CHMP7Q8WUX9 453 aaPredicted RBP20.23■□□□□ 0.83
HDAC4-206ENST00000460235 CARMIL1Q5VZK9 1371 aa20.22■□□□□ 0.83
HDAC4-206ENST00000460235 CUL7Q14999 1698 aa20.22■□□□□ 0.83
HDAC4-206ENST00000460235 RUSC2Q8N2Y8 1516 aa20.22■□□□□ 0.83
HDAC4-206ENST00000460235 SNAPC4Q5SXM2 1469 aa20.21■□□□□ 0.83
HDAC4-206ENST00000460235 SYNJ2O15056 1496 aa20.18■□□□□ 0.82
HDAC4-206ENST00000460235 FBLN2P98095 1184 aa20.18■□□□□ 0.82
HDAC4-206ENST00000460235 RAPGEF2Q9Y4G8 1499 aa20.14■□□□□ 0.81
HDAC4-206ENST00000460235 ADAMTS12P58397 1594 aa20.13■□□□□ 0.81
HDAC4-206ENST00000460235 PRXQ9BXM0 1461 aa20.11■□□□□ 0.81
HDAC4-206ENST00000460235 GRIN2AQ12879 1464 aa20.07■□□□□ 0.8
HDAC4-206ENST00000460235 OSCARQ8IYS5 282 aa20.07■□□□□ 0.8
HDAC4-206ENST00000460235 KIF21BO75037 1637 aa20.05■□□□□ 0.8
HDAC4-206ENST00000460235 GOLGA3Q08378 1498 aa20.04■□□□□ 0.8
HDAC4-206ENST00000460235 UBTFP17480 764 aaKnown RBP20.02■□□□□ 0.8
HDAC4-206ENST00000460235 CHD1O14646 1710 aa19.98■□□□□ 0.79
HDAC4-206ENST00000460235 NUP160Q12769 1436 aa19.96■□□□□ 0.79
HDAC4-206ENST00000460235 KIAA0586Q9BVV6 1533 aa19.93■□□□□ 0.78
HDAC4-206ENST00000460235 EHMT2Q96KQ7 1210 aa19.88■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms