RNA–Protein interactions for RNA: ENST00000460227.4

MECP2-206, Transcript of methyl-CpG binding protein 2, humanhuman

TSL 5

Gene MECP2, Length 1,298 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MECP2-206ENST00000460227 NISCHQ9Y2I1 1504 aa30.6■■■□□ 2.49
MECP2-206ENST00000460227 AEBP2Q6ZN18 517 aaPredicted RBP27.6■■■□□ 2.01
MECP2-206ENST00000460227 CCDC180Q9P1Z9 1646 aa26.9■■□□□ 1.9
MECP2-206ENST00000460227 ABCC9O60706 1549 aa26.24■■□□□ 1.79
MECP2-206ENST00000460227 CHIC1Q5VXU3 224 aa25.7■■□□□ 1.7
MECP2-206ENST00000460227 DCAF8L2P0C7V8 631 aa25.6■■□□□ 1.69
MECP2-206ENST00000460227 ZCCHC6Q5VYS8 1495 aaKnown RBP25.51■■□□□ 1.67
MECP2-206ENST00000460227 NACADO15069 1562 aa25.36■■□□□ 1.65
MECP2-206ENST00000460227 MYO15BQ96JP2 1530 aa25.35■■□□□ 1.65
MECP2-206ENST00000460227 DCAF1Q9Y4B6 1507 aa25.32■■□□□ 1.64
MECP2-206ENST00000460227 RB1CC1Q8TDY2 1594 aa25.29■■□□□ 1.64
MECP2-206ENST00000460227 PABPN1Q86U42 306 aaKnown RBP eCLIP24.7■■□□□ 1.54
MECP2-206ENST00000460227 SCRIBQ14160 1630 aa24.62■■□□□ 1.53
MECP2-206ENST00000460227 UNC13AQ9UPW8 1703 aa24.55■■□□□ 1.52
MECP2-206ENST00000460227 BICRAQ9NZM4 1560 aa24.54■■□□□ 1.52
MECP2-206ENST00000460227 SHROOM4Q9ULL8 1493 aa24.36■■□□□ 1.49
MECP2-206ENST00000460227 DNAJC5BQ9UF47 199 aa24.03■■□□□ 1.44
MECP2-206ENST00000460227 EIF4G1Q04637 1599 aaKnown RBP23.86■■□□□ 1.41
MECP2-206ENST00000460227 CECR2Q9BXF3 1484 aa23.85■■□□□ 1.41
MECP2-206ENST00000460227 CC2D2AQ9P2K1 1620 aa23.69■■□□□ 1.38
MECP2-206ENST00000460227 BAZ1AQ9NRL2 1556 aaPredicted RBP23.65■■□□□ 1.38
MECP2-206ENST00000460227 SMARCA4P51532 1647 aa23.59■■□□□ 1.37
MECP2-206ENST00000460227 MROH2BQ7Z745 1585 aa23.59■■□□□ 1.37
MECP2-206ENST00000460227 ATAD2BQ9ULI0 1458 aa23.52■■□□□ 1.36
MECP2-206ENST00000460227 NCAPD3P42695 1498 aa23.5■■□□□ 1.35
MECP2-206ENST00000460227 RSF1Q96T23 1441 aaPredicted RBP23.48■■□□□ 1.35
MECP2-206ENST00000460227 SENP3Q9H4L4 574 aaPredicted RBP23.44■■□□□ 1.34
MECP2-206ENST00000460227 SMARCA2P51531 1590 aa23.43■■□□□ 1.34
MECP2-206ENST00000460227 PEG3Q9GZU2 1588 aa23.4■■□□□ 1.34
MECP2-206ENST00000460227 BAZ1BQ9UIG0 1483 aaKnown RBP23.28■■□□□ 1.32
MECP2-206ENST00000460227 HMGXB3Q12766 1538 aa23.28■■□□□ 1.32
MECP2-206ENST00000460227 WIZO95785 1651 aa23.26■■□□□ 1.31
MECP2-206ENST00000460227 PHF23Q9BUL5 403 aaPredicted RBP23.17■■□□□ 1.3
MECP2-206ENST00000460227 SUPT5HO00267 1087 aaKnown RBP23.12■■□□□ 1.29
MECP2-206ENST00000460227 TOP2AP11388 1531 aaKnown RBP23.05■■□□□ 1.28
MECP2-206ENST00000460227 CCDC88BA6NC98 1476 aa22.89■■□□□ 1.25
MECP2-206ENST00000460227 CADPSQ9ULU8 1353 aa22.86■■□□□ 1.25
MECP2-206ENST00000460227 NESP48681 1621 aa22.79■■□□□ 1.24
MECP2-206ENST00000460227 CFTRP13569 1480 aa22.73■■□□□ 1.23
MECP2-206ENST00000460227 LAMC3Q9Y6N6 1575 aa22.71■■□□□ 1.23
MECP2-206ENST00000460227 PDS5BQ9NTI5 1447 aa22.65■■□□□ 1.22
MECP2-206ENST00000460227 ERCC6Q03468 1493 aa22.57■■□□□ 1.2
MECP2-206ENST00000460227 FANCD2Q9BXW9 1451 aa22.51■■□□□ 1.19
MECP2-206ENST00000460227 CEP164Q9UPV0 1460 aa22.41■■□□□ 1.18
MECP2-206ENST00000460227 KIF21AQ7Z4S6 1674 aa22.36■■□□□ 1.17
MECP2-206ENST00000460227 MRC2Q9UBG0 1479 aa22.34■■□□□ 1.17
MECP2-206ENST00000460227 THOC2Q8NI27 1593 aaKnown RBP22.27■■□□□ 1.16
MECP2-206ENST00000460227 URB2Q14146 1524 aaKnown RBP22.26■■□□□ 1.15
MECP2-206ENST00000460227 PRDM2Q13029 1718 aa22.26■■□□□ 1.15
MECP2-206ENST00000460227 CUX2O14529 1486 aa22.25■■□□□ 1.15
MECP2-206ENST00000460227 WDR62O43379 1518 aa22.22■■□□□ 1.15
MECP2-206ENST00000460227 ABCC8Q09428 1581 aa22.21■■□□□ 1.15
MECP2-206ENST00000460227 TOPBP1Q92547 1522 aa22.16■■□□□ 1.14
MECP2-206ENST00000460227 DNMBPQ6XZF7 1577 aa22.1■■□□□ 1.13
MECP2-206ENST00000460227 CUX1P39880 1505 aa22.09■■□□□ 1.13
MECP2-206ENST00000460227 WRNQ14191 1432 aaPredicted RBP eCLIP22.08■■□□□ 1.13
MECP2-206ENST00000460227 FOXD1Q16676 465 aa22.02■■□□□ 1.12
MECP2-206ENST00000460227 POLA1P09884 1462 aaPredicted RBP22■■□□□ 1.11
MECP2-206ENST00000460227 SOGA1O94964 1423 aa21.99■■□□□ 1.11
MECP2-206ENST00000460227 IFT140Q96RY7 1462 aa21.98■■□□□ 1.11
MECP2-206ENST00000460227 FGD5Q6ZNL6 1462 aa21.96■■□□□ 1.11
MECP2-206ENST00000460227 RAD54L2Q9Y4B4 1467 aa21.94■■□□□ 1.1
MECP2-206ENST00000460227 TOP2BQ02880 1626 aa21.92■■□□□ 1.1
MECP2-206ENST00000460227 SYNJ1O43426 1573 aa21.92■■□□□ 1.1
MECP2-206ENST00000460227 BIVM-ERCC5R4GMW8 1640 aa21.87■■□□□ 1.09
MECP2-206ENST00000460227 ZNF608Q9ULD9 1512 aaPredicted RBP21.86■■□□□ 1.09
MECP2-206ENST00000460227 TARBP1Q13395 1621 aaKnown RBP21.85■■□□□ 1.09
MECP2-206ENST00000460227 TDRD9Q8NDG6 1382 aaKnown RBP21.85■■□□□ 1.09
MECP2-206ENST00000460227 TRIM41Q8WV44 630 aa21.84■■□□□ 1.09
MECP2-206ENST00000460227 AQRO60306 1485 aaKnown RBP eCLIP21.82■■□□□ 1.08
MECP2-206ENST00000460227 ABCA10Q8WWZ4 1543 aa21.8■■□□□ 1.08
MECP2-206ENST00000460227 DNAJC5Q9H3Z4 198 aa21.74■■□□□ 1.07
MECP2-206ENST00000460227 GAPVD1Q14C86 1478 aa21.69■■□□□ 1.06
MECP2-206ENST00000460227 WDR97A6NE52 1622 aa21.66■■□□□ 1.06
MECP2-206ENST00000460227 EIF4G3O43432 1585 aaKnown RBP21.65■■□□□ 1.06
MECP2-206ENST00000460227 GRIN2BQ13224 1484 aa21.64■■□□□ 1.06
MECP2-206ENST00000460227 KIF27Q86VH2 1401 aa21.62■■□□□ 1.05
MECP2-206ENST00000460227 IGF1RP08069 1367 aa21.6■■□□□ 1.05
MECP2-206ENST00000460227 ABCA5Q8WWZ7 1642 aa21.58■■□□□ 1.04
MECP2-206ENST00000460227 SNAPC4Q5SXM2 1469 aa21.54■■□□□ 1.04
MECP2-206ENST00000460227 CHMP7Q8WUX9 453 aaPredicted RBP21.54■■□□□ 1.04
MECP2-206ENST00000460227 FBLN2P98095 1184 aa21.53■■□□□ 1.04
MECP2-206ENST00000460227 OSCARQ8IYS5 282 aa21.53■■□□□ 1.04
MECP2-206ENST00000460227 MAGI1Q96QZ7 1491 aaPredicted RBP21.52■■□□□ 1.04
MECP2-206ENST00000460227 RUSC2Q8N2Y8 1516 aa21.52■■□□□ 1.04
MECP2-206ENST00000460227 ERICH3Q5RHP9 1530 aa21.5■■□□□ 1.03
MECP2-206ENST00000460227 FHAD1B1AJZ9 1412 aa21.46■■□□□ 1.03
MECP2-206ENST00000460227 SYNJ2O15056 1496 aa21.45■■□□□ 1.03
MECP2-206ENST00000460227 CSRNP3Q8WYN3 585 aa21.43■■□□□ 1.02
MECP2-206ENST00000460227 CARMIL1Q5VZK9 1371 aa21.43■■□□□ 1.02
MECP2-206ENST00000460227 PBRM1Q86U86 1689 aa21.41■■□□□ 1.02
MECP2-206ENST00000460227 EEA1Q15075 1411 aa21.37■■□□□ 1.01
MECP2-206ENST00000460227 FAM9AQ8IZU1 332 aaPredicted RBP21.36■■□□□ 1.01
MECP2-206ENST00000460227 ADAMTS12P58397 1594 aa21.35■■□□□ 1.01
MECP2-206ENST00000460227 GRIN2AQ12879 1464 aa21.34■■□□□ 1.01
MECP2-206ENST00000460227 PRXQ9BXM0 1461 aa21.28■■□□□ 1
MECP2-206ENST00000460227 NUP160Q12769 1436 aa21.28■■□□□ 1
MECP2-206ENST00000460227 CHD1O14646 1710 aa21.26■□□□□ 0.99
MECP2-206ENST00000460227 RAPGEF2Q9Y4G8 1499 aa21.26■□□□□ 0.99
MECP2-206ENST00000460227 CUL7Q14999 1698 aa21.26■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms