RNA–Protein interactions for RNA: ENST00000460123.1

GRIA3-201, Transcript of glutamate ionotropic receptor AMPA type subunit 3, humanhuman

TSL 2

Gene GRIA3, Length 554 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GRIA3-201ENST00000460123 NISCHQ9Y2I1 1504 aa26.37■■□□□ 1.81
GRIA3-201ENST00000460123 CCDC180Q9P1Z9 1646 aa23.22■■□□□ 1.31
GRIA3-201ENST00000460123 AEBP2Q6ZN18 517 aaPredicted RBP22.33■■□□□ 1.17
GRIA3-201ENST00000460123 ZCCHC6Q5VYS8 1495 aaKnown RBP22.15■■□□□ 1.14
GRIA3-201ENST00000460123 ABCC9O60706 1549 aa21.88■■□□□ 1.09
GRIA3-201ENST00000460123 DCAF1Q9Y4B6 1507 aa21.87■■□□□ 1.09
GRIA3-201ENST00000460123 CHIC1Q5VXU3 224 aa21.71■■□□□ 1.07
GRIA3-201ENST00000460123 MYO15BQ96JP2 1530 aa21.68■■□□□ 1.06
GRIA3-201ENST00000460123 DCAF8L2P0C7V8 631 aa21.62■■□□□ 1.05
GRIA3-201ENST00000460123 NACADO15069 1562 aa21.58■■□□□ 1.05
GRIA3-201ENST00000460123 RB1CC1Q8TDY2 1594 aa21.44■■□□□ 1.02
GRIA3-201ENST00000460123 SHROOM4Q9ULL8 1493 aa21.24■□□□□ 0.99
GRIA3-201ENST00000460123 SCRIBQ14160 1630 aa21.2■□□□□ 0.98
GRIA3-201ENST00000460123 UNC13AQ9UPW8 1703 aa21.1■□□□□ 0.97
GRIA3-201ENST00000460123 BICRAQ9NZM4 1560 aa20.75■□□□□ 0.91
GRIA3-201ENST00000460123 PABPN1Q86U42 306 aaKnown RBP eCLIP20.5■□□□□ 0.87
GRIA3-201ENST00000460123 CECR2Q9BXF3 1484 aa20.43■□□□□ 0.86
GRIA3-201ENST00000460123 BAZ1AQ9NRL2 1556 aaPredicted RBP20.41■□□□□ 0.86
GRIA3-201ENST00000460123 SMARCA4P51532 1647 aa20.35■□□□□ 0.85
GRIA3-201ENST00000460123 SUPT5HO00267 1087 aaKnown RBP20.34■□□□□ 0.85
GRIA3-201ENST00000460123 RSF1Q96T23 1441 aaPredicted RBP20.33■□□□□ 0.84
GRIA3-201ENST00000460123 MROH2BQ7Z745 1585 aa20.33■□□□□ 0.84
GRIA3-201ENST00000460123 WIZO95785 1651 aa20.22■□□□□ 0.83
GRIA3-201ENST00000460123 EIF4G1Q04637 1599 aaKnown RBP20.14■□□□□ 0.81
GRIA3-201ENST00000460123 PEG3Q9GZU2 1588 aa20.13■□□□□ 0.81
GRIA3-201ENST00000460123 SMARCA2P51531 1590 aa20.04■□□□□ 0.8
GRIA3-201ENST00000460123 TOP2AP11388 1531 aaKnown RBP20.02■□□□□ 0.8
GRIA3-201ENST00000460123 ATAD2BQ9ULI0 1458 aa19.99■□□□□ 0.79
GRIA3-201ENST00000460123 CC2D2AQ9P2K1 1620 aa19.89■□□□□ 0.77
GRIA3-201ENST00000460123 HMGXB3Q12766 1538 aa19.88■□□□□ 0.77
GRIA3-201ENST00000460123 BAZ1BQ9UIG0 1483 aaKnown RBP19.88■□□□□ 0.77
GRIA3-201ENST00000460123 NCAPD3P42695 1498 aa19.84■□□□□ 0.77
GRIA3-201ENST00000460123 CCDC88BA6NC98 1476 aa19.73■□□□□ 0.75
GRIA3-201ENST00000460123 PRDM2Q13029 1718 aa19.51■□□□□ 0.71
GRIA3-201ENST00000460123 CFTRP13569 1480 aa19.35■□□□□ 0.69
GRIA3-201ENST00000460123 DNAJC5BQ9UF47 199 aa19.31■□□□□ 0.68
GRIA3-201ENST00000460123 CADPSQ9ULU8 1353 aa19.29■□□□□ 0.68
GRIA3-201ENST00000460123 LAMC3Q9Y6N6 1575 aa19.28■□□□□ 0.68
GRIA3-201ENST00000460123 ABCC8Q09428 1581 aa19.27■□□□□ 0.68
GRIA3-201ENST00000460123 TRIM41Q8WV44 630 aa19.17■□□□□ 0.66
GRIA3-201ENST00000460123 WRNQ14191 1432 aaPredicted RBP eCLIP19.17■□□□□ 0.66
GRIA3-201ENST00000460123 NESP48681 1621 aa19.16■□□□□ 0.66
GRIA3-201ENST00000460123 BIVM-ERCC5R4GMW8 1640 aa19.14■□□□□ 0.66
GRIA3-201ENST00000460123 SYNJ1O43426 1573 aa19.14■□□□□ 0.65
GRIA3-201ENST00000460123 TOP2BQ02880 1626 aa19.11■□□□□ 0.65
GRIA3-201ENST00000460123 FANCD2Q9BXW9 1451 aa19.1■□□□□ 0.65
GRIA3-201ENST00000460123 KIF21AQ7Z4S6 1674 aa19.08■□□□□ 0.65
GRIA3-201ENST00000460123 PDS5BQ9NTI5 1447 aa19.05■□□□□ 0.64
GRIA3-201ENST00000460123 CUX1P39880 1505 aa19.04■□□□□ 0.64
GRIA3-201ENST00000460123 CEP164Q9UPV0 1460 aa19.03■□□□□ 0.64
GRIA3-201ENST00000460123 PHF23Q9BUL5 403 aaPredicted RBP19.03■□□□□ 0.64
GRIA3-201ENST00000460123 SENP3Q9H4L4 574 aaPredicted RBP19.03■□□□□ 0.64
GRIA3-201ENST00000460123 DNMBPQ6XZF7 1577 aa18.98■□□□□ 0.63
GRIA3-201ENST00000460123 TOPBP1Q92547 1522 aa18.9■□□□□ 0.62
GRIA3-201ENST00000460123 URB2Q14146 1524 aaKnown RBP18.88■□□□□ 0.61
GRIA3-201ENST00000460123 EEA1Q15075 1411 aa18.87■□□□□ 0.61
GRIA3-201ENST00000460123 FGD5Q6ZNL6 1462 aa18.85■□□□□ 0.61
GRIA3-201ENST00000460123 MRC2Q9UBG0 1479 aa18.84■□□□□ 0.61
GRIA3-201ENST00000460123 ERCC6Q03468 1493 aa18.81■□□□□ 0.6
GRIA3-201ENST00000460123 SOGA1O94964 1423 aa18.81■□□□□ 0.6
GRIA3-201ENST00000460123 THOC2Q8NI27 1593 aaKnown RBP18.79■□□□□ 0.6
GRIA3-201ENST00000460123 WDR62O43379 1518 aa18.79■□□□□ 0.6
GRIA3-201ENST00000460123 POLA1P09884 1462 aaPredicted RBP18.78■□□□□ 0.6
GRIA3-201ENST00000460123 WDR97A6NE52 1622 aa18.78■□□□□ 0.6
GRIA3-201ENST00000460123 RUSC2Q8N2Y8 1516 aa18.76■□□□□ 0.59
GRIA3-201ENST00000460123 FAM9AQ8IZU1 332 aaPredicted RBP18.76■□□□□ 0.59
GRIA3-201ENST00000460123 ABCA10Q8WWZ4 1543 aa18.71■□□□□ 0.59
GRIA3-201ENST00000460123 KIF27Q86VH2 1401 aa18.71■□□□□ 0.59
GRIA3-201ENST00000460123 CUX2O14529 1486 aa18.68■□□□□ 0.58
GRIA3-201ENST00000460123 KIF21BO75037 1637 aa18.67■□□□□ 0.58
GRIA3-201ENST00000460123 TARBP1Q13395 1621 aaKnown RBP18.67■□□□□ 0.58
GRIA3-201ENST00000460123 RAD54L2Q9Y4B4 1467 aa18.67■□□□□ 0.58
GRIA3-201ENST00000460123 CSRNP3Q8WYN3 585 aa18.66■□□□□ 0.58
GRIA3-201ENST00000460123 ABCA5Q8WWZ7 1642 aa18.63■□□□□ 0.57
GRIA3-201ENST00000460123 LOC105371045A0A1W2PR82 267 aa18.61■□□□□ 0.57
GRIA3-201ENST00000460123 IFT140Q96RY7 1462 aa18.59■□□□□ 0.57
GRIA3-201ENST00000460123 GOLGA3Q08378 1498 aa18.58■□□□□ 0.56
GRIA3-201ENST00000460123 PBRM1Q86U86 1689 aa18.57■□□□□ 0.56
GRIA3-201ENST00000460123 ERICH3Q5RHP9 1530 aa18.57■□□□□ 0.56
GRIA3-201ENST00000460123 CUL7Q14999 1698 aa18.56■□□□□ 0.56
GRIA3-201ENST00000460123 PRXQ9BXM0 1461 aa18.54■□□□□ 0.56
GRIA3-201ENST00000460123 GAPVD1Q14C86 1478 aa18.51■□□□□ 0.55
GRIA3-201ENST00000460123 IGF1RP08069 1367 aa18.49■□□□□ 0.55
GRIA3-201ENST00000460123 RAPGEF2Q9Y4G8 1499 aa18.48■□□□□ 0.55
GRIA3-201ENST00000460123 EIF4G3O43432 1585 aaKnown RBP18.47■□□□□ 0.55
GRIA3-201ENST00000460123 TDRD9Q8NDG6 1382 aaKnown RBP18.45■□□□□ 0.54
GRIA3-201ENST00000460123 TNIKQ9UKE5 1360 aa18.45■□□□□ 0.54
GRIA3-201ENST00000460123 EHMT2Q96KQ7 1210 aa18.45■□□□□ 0.54
GRIA3-201ENST00000460123 CARMIL1Q5VZK9 1371 aa18.42■□□□□ 0.54
GRIA3-201ENST00000460123 ZNF608Q9ULD9 1512 aaPredicted RBP18.42■□□□□ 0.54
GRIA3-201ENST00000460123 GRIN2BQ13224 1484 aa18.4■□□□□ 0.54
GRIA3-201ENST00000460123 AQRO60306 1485 aaKnown RBP eCLIP18.39■□□□□ 0.54
GRIA3-201ENST00000460123 ADAMTS12P58397 1594 aa18.39■□□□□ 0.53
GRIA3-201ENST00000460123 UBTFP17480 764 aaKnown RBP18.38■□□□□ 0.53
GRIA3-201ENST00000460123 CTTNBP2Q8WZ74 1663 aa18.38■□□□□ 0.53
GRIA3-201ENST00000460123 CEP162Q5TB80 1403 aa18.33■□□□□ 0.53
GRIA3-201ENST00000460123 FHAD1B1AJZ9 1412 aa18.32■□□□□ 0.52
GRIA3-201ENST00000460123 MAGI1Q96QZ7 1491 aaPredicted RBP18.3■□□□□ 0.52
GRIA3-201ENST00000460123 SNAPC4Q5SXM2 1469 aa18.29■□□□□ 0.52
GRIA3-201ENST00000460123 CLIP1P30622 1438 aa18.22■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms