RNA–Protein interactions for RNA: ENST00000457302.2

C9orf139-201, Transcript of chromosome 9 open reading frame 139, humanhuman

TSL 3

Gene C9orf139, Length 697 nt, Biotype antisense RNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf139-201ENST00000457302 NISCHQ9Y2I1 1504 aa29.45■■■□□ 2.31
C9orf139-201ENST00000457302 CCDC180Q9P1Z9 1646 aa26.16■■□□□ 1.78
C9orf139-201ENST00000457302 ABCC9O60706 1549 aa25.63■■□□□ 1.69
C9orf139-201ENST00000457302 DCAF8L2P0C7V8 631 aa24.87■■□□□ 1.57
C9orf139-201ENST00000457302 RB1CC1Q8TDY2 1594 aa24.68■■□□□ 1.54
C9orf139-201ENST00000457302 NACADO15069 1562 aa24.64■■□□□ 1.54
C9orf139-201ENST00000457302 ZCCHC6Q5VYS8 1495 aaKnown RBP24.48■■□□□ 1.51
C9orf139-201ENST00000457302 MYO15BQ96JP2 1530 aa24.45■■□□□ 1.5
C9orf139-201ENST00000457302 DCAF1Q9Y4B6 1507 aa24.35■■□□□ 1.49
C9orf139-201ENST00000457302 UNC13AQ9UPW8 1703 aa24.04■■□□□ 1.44
C9orf139-201ENST00000457302 PABPN1Q86U42 306 aaKnown RBP eCLIP24.02■■□□□ 1.44
C9orf139-201ENST00000457302 SCRIBQ14160 1630 aa23.89■■□□□ 1.42
C9orf139-201ENST00000457302 BICRAQ9NZM4 1560 aa23.81■■□□□ 1.4
C9orf139-201ENST00000457302 SHROOM4Q9ULL8 1493 aa23.62■■□□□ 1.37
C9orf139-201ENST00000457302 DNAJC5BQ9UF47 199 aa23.48■■□□□ 1.35
C9orf139-201ENST00000457302 EIF4G1Q04637 1599 aaKnown RBP23.24■■□□□ 1.31
C9orf139-201ENST00000457302 CC2D2AQ9P2K1 1620 aa23.15■■□□□ 1.3
C9orf139-201ENST00000457302 CECR2Q9BXF3 1484 aa23.04■■□□□ 1.28
C9orf139-201ENST00000457302 BAZ1AQ9NRL2 1556 aaPredicted RBP22.85■■□□□ 1.25
C9orf139-201ENST00000457302 SMARCA4P51532 1647 aa22.83■■□□□ 1.25
C9orf139-201ENST00000457302 SMARCA2P51531 1590 aa22.74■■□□□ 1.23
C9orf139-201ENST00000457302 NCAPD3P42695 1498 aa22.72■■□□□ 1.23
C9orf139-201ENST00000457302 ATAD2BQ9ULI0 1458 aa22.72■■□□□ 1.23
C9orf139-201ENST00000457302 MROH2BQ7Z745 1585 aa22.67■■□□□ 1.22
C9orf139-201ENST00000457302 BAZ1BQ9UIG0 1483 aaKnown RBP22.59■■□□□ 1.21
C9orf139-201ENST00000457302 PEG3Q9GZU2 1588 aa22.58■■□□□ 1.2
C9orf139-201ENST00000457302 HMGXB3Q12766 1538 aa22.57■■□□□ 1.2
C9orf139-201ENST00000457302 WIZO95785 1651 aa22.46■■□□□ 1.19
C9orf139-201ENST00000457302 RSF1Q96T23 1441 aaPredicted RBP22.45■■□□□ 1.18
C9orf139-201ENST00000457302 TOP2AP11388 1531 aaKnown RBP22.21■■□□□ 1.15
C9orf139-201ENST00000457302 ERCC6Q03468 1493 aa22.16■■□□□ 1.14
C9orf139-201ENST00000457302 NESP48681 1621 aa22.14■■□□□ 1.14
C9orf139-201ENST00000457302 LAMC3Q9Y6N6 1575 aa22.13■■□□□ 1.13
C9orf139-201ENST00000457302 CADPSQ9ULU8 1353 aa22.11■■□□□ 1.13
C9orf139-201ENST00000457302 SUPT5HO00267 1087 aaKnown RBP22.08■■□□□ 1.13
C9orf139-201ENST00000457302 PDS5BQ9NTI5 1447 aa22.06■■□□□ 1.12
C9orf139-201ENST00000457302 CCDC88BA6NC98 1476 aa21.98■■□□□ 1.11
C9orf139-201ENST00000457302 CFTRP13569 1480 aa21.92■■□□□ 1.1
C9orf139-201ENST00000457302 KIF21AQ7Z4S6 1674 aa21.89■■□□□ 1.1
C9orf139-201ENST00000457302 CUX2O14529 1486 aa21.84■■□□□ 1.09
C9orf139-201ENST00000457302 FANCD2Q9BXW9 1451 aa21.83■■□□□ 1.08
C9orf139-201ENST00000457302 CEP164Q9UPV0 1460 aa21.81■■□□□ 1.08
C9orf139-201ENST00000457302 PRDM2Q13029 1718 aa21.77■■□□□ 1.08
C9orf139-201ENST00000457302 MRC2Q9UBG0 1479 aa21.75■■□□□ 1.07
C9orf139-201ENST00000457302 THOC2Q8NI27 1593 aaKnown RBP21.74■■□□□ 1.07
C9orf139-201ENST00000457302 DNAJC5Q9H3Z4 198 aa21.73■■□□□ 1.07
C9orf139-201ENST00000457302 WDR62O43379 1518 aa21.62■■□□□ 1.05
C9orf139-201ENST00000457302 ABCC8Q09428 1581 aa21.56■■□□□ 1.04
C9orf139-201ENST00000457302 URB2Q14146 1524 aaKnown RBP21.55■■□□□ 1.04
C9orf139-201ENST00000457302 TOPBP1Q92547 1522 aa21.45■■□□□ 1.02
C9orf139-201ENST00000457302 DNMBPQ6XZF7 1577 aa21.44■■□□□ 1.02
C9orf139-201ENST00000457302 IFT140Q96RY7 1462 aa21.36■■□□□ 1.01
C9orf139-201ENST00000457302 SOGA1O94964 1423 aa21.27■■□□□ 1
C9orf139-201ENST00000457302 CUX1P39880 1505 aa21.26■□□□□ 0.99
C9orf139-201ENST00000457302 POLA1P09884 1462 aaPredicted RBP21.26■□□□□ 0.99
C9orf139-201ENST00000457302 FGD5Q6ZNL6 1462 aa21.23■□□□□ 0.99
C9orf139-201ENST00000457302 WRNQ14191 1432 aaPredicted RBP eCLIP21.21■□□□□ 0.99
C9orf139-201ENST00000457302 RAD54L2Q9Y4B4 1467 aa21.2■□□□□ 0.98
C9orf139-201ENST00000457302 ZNF608Q9ULD9 1512 aaPredicted RBP21.19■□□□□ 0.98
C9orf139-201ENST00000457302 TARBP1Q13395 1621 aaKnown RBP21.18■□□□□ 0.98
C9orf139-201ENST00000457302 AQRO60306 1485 aaKnown RBP eCLIP21.13■□□□□ 0.97
C9orf139-201ENST00000457302 TDRD9Q8NDG6 1382 aaKnown RBP21.13■□□□□ 0.97
C9orf139-201ENST00000457302 TOP2BQ02880 1626 aa21.11■□□□□ 0.97
C9orf139-201ENST00000457302 OSCARQ8IYS5 282 aa21.1■□□□□ 0.97
C9orf139-201ENST00000457302 BIVM-ERCC5R4GMW8 1640 aa21.1■□□□□ 0.97
C9orf139-201ENST00000457302 EIF4G3O43432 1585 aaKnown RBP21.1■□□□□ 0.97
C9orf139-201ENST00000457302 SYNJ1O43426 1573 aa21.07■□□□□ 0.96
C9orf139-201ENST00000457302 WDR97A6NE52 1622 aa21.06■□□□□ 0.96
C9orf139-201ENST00000457302 FBLN2P98095 1184 aa21.04■□□□□ 0.96
C9orf139-201ENST00000457302 ABCA10Q8WWZ4 1543 aa21.02■□□□□ 0.96
C9orf139-201ENST00000457302 GAPVD1Q14C86 1478 aa21■□□□□ 0.95
C9orf139-201ENST00000457302 GRIN2BQ13224 1484 aa20.98■□□□□ 0.95
C9orf139-201ENST00000457302 CHMP7Q8WUX9 453 aaPredicted RBP20.97■□□□□ 0.95
C9orf139-201ENST00000457302 SNAPC4Q5SXM2 1469 aa20.91■□□□□ 0.94
C9orf139-201ENST00000457302 MAGI1Q96QZ7 1491 aaPredicted RBP20.91■□□□□ 0.94
C9orf139-201ENST00000457302 PBRM1Q86U86 1689 aa20.9■□□□□ 0.94
C9orf139-201ENST00000457302 TRIM41Q8WV44 630 aa20.89■□□□□ 0.93
C9orf139-201ENST00000457302 ABCA5Q8WWZ7 1642 aa20.88■□□□□ 0.93
C9orf139-201ENST00000457302 CHD1O14646 1710 aa20.87■□□□□ 0.93
C9orf139-201ENST00000457302 SYNJ2O15056 1496 aa20.82■□□□□ 0.92
C9orf139-201ENST00000457302 KIF27Q86VH2 1401 aa20.82■□□□□ 0.92
C9orf139-201ENST00000457302 ERICH3Q5RHP9 1530 aa20.78■□□□□ 0.92
C9orf139-201ENST00000457302 FHAD1B1AJZ9 1412 aa20.76■□□□□ 0.91
C9orf139-201ENST00000457302 IGF1RP08069 1367 aa20.69■□□□□ 0.9
C9orf139-201ENST00000457302 ADAMTS12P58397 1594 aa20.68■□□□□ 0.9
C9orf139-201ENST00000457302 GRIN2AQ12879 1464 aa20.68■□□□□ 0.9
C9orf139-201ENST00000457302 CARMIL1Q5VZK9 1371 aa20.61■□□□□ 0.89
C9orf139-201ENST00000457302 CUL7Q14999 1698 aa20.61■□□□□ 0.89
C9orf139-201ENST00000457302 RIMBP3CA6NJZ7 1639 aa20.59■□□□□ 0.89
C9orf139-201ENST00000457302 RIMBP3BA6NNM3 1639 aa20.59■□□□□ 0.89
C9orf139-201ENST00000457302 RIMBP3Q9UFD9 1639 aa20.59■□□□□ 0.89
C9orf139-201ENST00000457302 ARHGEF11O15085 1522 aa20.58■□□□□ 0.89
C9orf139-201ENST00000457302 CLASP1Q7Z460 1538 aa20.58■□□□□ 0.88
C9orf139-201ENST00000457302 NUP160Q12769 1436 aa20.55■□□□□ 0.88
C9orf139-201ENST00000457302 CHIC1Q5VXU3 224 aa20.55■□□□□ 0.88
C9orf139-201ENST00000457302 CYB5RLQ6IPT4 315 aa20.55■□□□□ 0.88
C9orf139-201ENST00000457302 RUSC2Q8N2Y8 1516 aa20.53■□□□□ 0.88
C9orf139-201ENST00000457302 CEP170Q5SW79 1584 aa20.52■□□□□ 0.88
C9orf139-201ENST00000457302 JPH4Q96JJ6 628 aa20.5■□□□□ 0.87
C9orf139-201ENST00000457302 CSRNP3Q8WYN3 585 aa20.47■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms