RNA–Protein interactions for RNA: ENST00000456608.1

CASC4P1-201, Transcript of cancer susceptibility 4 pseudogene 1, humanhuman

BASIC

Gene CASC4P1, Length 1,312 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASC4P1-201ENST00000456608 NISCHQ9Y2I1 1504 aa30.06■■■□□ 2.4
CASC4P1-201ENST00000456608 CCDC180Q9P1Z9 1646 aa26.36■■□□□ 1.81
CASC4P1-201ENST00000456608 ZCCHC6Q5VYS8 1495 aaKnown RBP25.23■■□□□ 1.63
CASC4P1-201ENST00000456608 AEBP2Q6ZN18 517 aaPredicted RBP25.22■■□□□ 1.63
CASC4P1-201ENST00000456608 ABCC9O60706 1549 aa24.92■■□□□ 1.58
CASC4P1-201ENST00000456608 DCAF1Q9Y4B6 1507 aa24.9■■□□□ 1.58
CASC4P1-201ENST00000456608 DCAF8L2P0C7V8 631 aa24.69■■□□□ 1.54
CASC4P1-201ENST00000456608 MYO15BQ96JP2 1530 aa24.67■■□□□ 1.54
CASC4P1-201ENST00000456608 NACADO15069 1562 aa24.54■■□□□ 1.52
CASC4P1-201ENST00000456608 CHIC1Q5VXU3 224 aa24.54■■□□□ 1.52
CASC4P1-201ENST00000456608 RB1CC1Q8TDY2 1594 aa24.35■■□□□ 1.49
CASC4P1-201ENST00000456608 SHROOM4Q9ULL8 1493 aa24.28■■□□□ 1.48
CASC4P1-201ENST00000456608 SCRIBQ14160 1630 aa24.12■■□□□ 1.45
CASC4P1-201ENST00000456608 UNC13AQ9UPW8 1703 aa23.95■■□□□ 1.42
CASC4P1-201ENST00000456608 BICRAQ9NZM4 1560 aa23.64■■□□□ 1.38
CASC4P1-201ENST00000456608 PABPN1Q86U42 306 aaKnown RBP eCLIP23.42■■□□□ 1.34
CASC4P1-201ENST00000456608 CECR2Q9BXF3 1484 aa23.33■■□□□ 1.33
CASC4P1-201ENST00000456608 SUPT5HO00267 1087 aaKnown RBP23.27■■□□□ 1.32
CASC4P1-201ENST00000456608 BAZ1AQ9NRL2 1556 aaPredicted RBP23.22■■□□□ 1.31
CASC4P1-201ENST00000456608 RSF1Q96T23 1441 aaPredicted RBP23.22■■□□□ 1.31
CASC4P1-201ENST00000456608 MROH2BQ7Z745 1585 aa23.2■■□□□ 1.3
CASC4P1-201ENST00000456608 SMARCA4P51532 1647 aa23.16■■□□□ 1.3
CASC4P1-201ENST00000456608 WIZO95785 1651 aa23.02■■□□□ 1.28
CASC4P1-201ENST00000456608 EIF4G1Q04637 1599 aaKnown RBP22.91■■□□□ 1.26
CASC4P1-201ENST00000456608 PEG3Q9GZU2 1588 aa22.91■■□□□ 1.26
CASC4P1-201ENST00000456608 TOP2AP11388 1531 aaKnown RBP22.79■■□□□ 1.24
CASC4P1-201ENST00000456608 SMARCA2P51531 1590 aa22.79■■□□□ 1.24
CASC4P1-201ENST00000456608 ATAD2BQ9ULI0 1458 aa22.77■■□□□ 1.24
CASC4P1-201ENST00000456608 BAZ1BQ9UIG0 1483 aaKnown RBP22.62■■□□□ 1.21
CASC4P1-201ENST00000456608 NCAPD3P42695 1498 aa22.62■■□□□ 1.21
CASC4P1-201ENST00000456608 CC2D2AQ9P2K1 1620 aa22.61■■□□□ 1.21
CASC4P1-201ENST00000456608 HMGXB3Q12766 1538 aa22.61■■□□□ 1.21
CASC4P1-201ENST00000456608 CCDC88BA6NC98 1476 aa22.51■■□□□ 1.19
CASC4P1-201ENST00000456608 DNAJC5BQ9UF47 199 aa22.09■■□□□ 1.13
CASC4P1-201ENST00000456608 PRDM2Q13029 1718 aa22.08■■□□□ 1.13
CASC4P1-201ENST00000456608 CFTRP13569 1480 aa22.07■■□□□ 1.12
CASC4P1-201ENST00000456608 CADPSQ9ULU8 1353 aa21.99■■□□□ 1.11
CASC4P1-201ENST00000456608 ABCC8Q09428 1581 aa21.99■■□□□ 1.11
CASC4P1-201ENST00000456608 TRIM41Q8WV44 630 aa21.91■■□□□ 1.1
CASC4P1-201ENST00000456608 LAMC3Q9Y6N6 1575 aa21.9■■□□□ 1.1
CASC4P1-201ENST00000456608 WRNQ14191 1432 aaPredicted RBP eCLIP21.86■■□□□ 1.09
CASC4P1-201ENST00000456608 NESP48681 1621 aa21.85■■□□□ 1.09
CASC4P1-201ENST00000456608 SYNJ1O43426 1573 aa21.81■■□□□ 1.08
CASC4P1-201ENST00000456608 BIVM-ERCC5R4GMW8 1640 aa21.77■■□□□ 1.08
CASC4P1-201ENST00000456608 FANCD2Q9BXW9 1451 aa21.76■■□□□ 1.07
CASC4P1-201ENST00000456608 TOP2BQ02880 1626 aa21.75■■□□□ 1.07
CASC4P1-201ENST00000456608 CUX1P39880 1505 aa21.71■■□□□ 1.07
CASC4P1-201ENST00000456608 KIF21AQ7Z4S6 1674 aa21.67■■□□□ 1.06
CASC4P1-201ENST00000456608 PDS5BQ9NTI5 1447 aa21.67■■□□□ 1.06
CASC4P1-201ENST00000456608 CEP164Q9UPV0 1460 aa21.64■■□□□ 1.06
CASC4P1-201ENST00000456608 DNMBPQ6XZF7 1577 aa21.59■■□□□ 1.05
CASC4P1-201ENST00000456608 PHF23Q9BUL5 403 aaPredicted RBP21.55■■□□□ 1.04
CASC4P1-201ENST00000456608 TOPBP1Q92547 1522 aa21.53■■□□□ 1.04
CASC4P1-201ENST00000456608 SOGA1O94964 1423 aa21.52■■□□□ 1.03
CASC4P1-201ENST00000456608 URB2Q14146 1524 aaKnown RBP21.51■■□□□ 1.03
CASC4P1-201ENST00000456608 EEA1Q15075 1411 aa21.48■■□□□ 1.03
CASC4P1-201ENST00000456608 FGD5Q6ZNL6 1462 aa21.48■■□□□ 1.03
CASC4P1-201ENST00000456608 FAM9AQ8IZU1 332 aaPredicted RBP21.47■■□□□ 1.03
CASC4P1-201ENST00000456608 SENP3Q9H4L4 574 aaPredicted RBP21.47■■□□□ 1.03
CASC4P1-201ENST00000456608 RUSC2Q8N2Y8 1516 aa21.46■■□□□ 1.03
CASC4P1-201ENST00000456608 MRC2Q9UBG0 1479 aa21.44■■□□□ 1.02
CASC4P1-201ENST00000456608 POLA1P09884 1462 aaPredicted RBP21.4■■□□□ 1.02
CASC4P1-201ENST00000456608 ERCC6Q03468 1493 aa21.37■■□□□ 1.01
CASC4P1-201ENST00000456608 WDR62O43379 1518 aa21.36■■□□□ 1.01
CASC4P1-201ENST00000456608 THOC2Q8NI27 1593 aaKnown RBP21.35■■□□□ 1.01
CASC4P1-201ENST00000456608 LOC105371045A0A1W2PR82 267 aa21.34■■□□□ 1.01
CASC4P1-201ENST00000456608 WDR97A6NE52 1622 aa21.34■■□□□ 1.01
CASC4P1-201ENST00000456608 CSRNP3Q8WYN3 585 aa21.32■■□□□ 1
CASC4P1-201ENST00000456608 RAD54L2Q9Y4B4 1467 aa21.31■■□□□ 1
CASC4P1-201ENST00000456608 KIF27Q86VH2 1401 aa21.31■■□□□ 1
CASC4P1-201ENST00000456608 ABCA10Q8WWZ4 1543 aa21.3■■□□□ 1
CASC4P1-201ENST00000456608 CUX2O14529 1486 aa21.29■■□□□ 1
CASC4P1-201ENST00000456608 KIF21BO75037 1637 aa21.26■□□□□ 0.99
CASC4P1-201ENST00000456608 TARBP1Q13395 1621 aaKnown RBP21.26■□□□□ 0.99
CASC4P1-201ENST00000456608 ABCA5Q8WWZ7 1642 aa21.19■□□□□ 0.98
CASC4P1-201ENST00000456608 GOLGA3Q08378 1498 aa21.17■□□□□ 0.98
CASC4P1-201ENST00000456608 PRXQ9BXM0 1461 aa21.16■□□□□ 0.98
CASC4P1-201ENST00000456608 IFT140Q96RY7 1462 aa21.15■□□□□ 0.98
CASC4P1-201ENST00000456608 ERICH3Q5RHP9 1530 aa21.13■□□□□ 0.97
CASC4P1-201ENST00000456608 IGF1RP08069 1367 aa21.13■□□□□ 0.97
CASC4P1-201ENST00000456608 EHMT2Q96KQ7 1210 aa21.12■□□□□ 0.97
CASC4P1-201ENST00000456608 RAPGEF2Q9Y4G8 1499 aa21.1■□□□□ 0.97
CASC4P1-201ENST00000456608 GAPVD1Q14C86 1478 aa21.08■□□□□ 0.96
CASC4P1-201ENST00000456608 TDRD9Q8NDG6 1382 aaKnown RBP21.08■□□□□ 0.96
CASC4P1-201ENST00000456608 TNIKQ9UKE5 1360 aa21.07■□□□□ 0.96
CASC4P1-201ENST00000456608 CUL7Q14999 1698 aa21.07■□□□□ 0.96
CASC4P1-201ENST00000456608 PBRM1Q86U86 1689 aa21.07■□□□□ 0.96
CASC4P1-201ENST00000456608 CARMIL1Q5VZK9 1371 aa21.02■□□□□ 0.96
CASC4P1-201ENST00000456608 ZNF608Q9ULD9 1512 aaPredicted RBP21.01■□□□□ 0.95
CASC4P1-201ENST00000456608 UBTFP17480 764 aaKnown RBP21■□□□□ 0.95
CASC4P1-201ENST00000456608 AQRO60306 1485 aaKnown RBP eCLIP20.99■□□□□ 0.95
CASC4P1-201ENST00000456608 EIF4G3O43432 1585 aaKnown RBP20.99■□□□□ 0.95
CASC4P1-201ENST00000456608 GRIN2BQ13224 1484 aa20.95■□□□□ 0.94
CASC4P1-201ENST00000456608 CEP162Q5TB80 1403 aa20.92■□□□□ 0.94
CASC4P1-201ENST00000456608 ADAMTS12P58397 1594 aa20.9■□□□□ 0.94
CASC4P1-201ENST00000456608 FHAD1B1AJZ9 1412 aa20.86■□□□□ 0.93
CASC4P1-201ENST00000456608 CTTNBP2Q8WZ74 1663 aa20.85■□□□□ 0.93
CASC4P1-201ENST00000456608 SNAPC4Q5SXM2 1469 aa20.82■□□□□ 0.92
CASC4P1-201ENST00000456608 MAGI1Q96QZ7 1491 aaPredicted RBP20.8■□□□□ 0.92
CASC4P1-201ENST00000456608 CLIP1P30622 1438 aa20.8■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms