RNA–Protein interactions for RNA: ENST00000456257.1

ERCC3-204, Transcript of ERCC excision repair 3, TFIIH core complex helicase subunit, humanhuman

TSL 4

Gene ERCC3, Length 563 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3-204ENST00000456257 NISCHQ9Y2I1 1504 aa17.09■□□□□ 0.33
ERCC3-204ENST00000456257 AEBP2Q6ZN18 517 aaPredicted RBP15.12■□□□□ 0.01
ERCC3-204ENST00000456257 CCDC180Q9P1Z9 1646 aa14.84□□□□□ -0.03
ERCC3-204ENST00000456257 ZCCHC6Q5VYS8 1495 aaKnown RBP14.34□□□□□ -0.11
ERCC3-204ENST00000456257 DCAF1Q9Y4B6 1507 aa14.23□□□□□ -0.13
ERCC3-204ENST00000456257 MYO15BQ96JP2 1530 aa14.1□□□□□ -0.15
ERCC3-204ENST00000456257 CHIC1Q5VXU3 224 aa14.01□□□□□ -0.17
ERCC3-204ENST00000456257 ABCC9O60706 1549 aa13.95□□□□□ -0.18
ERCC3-204ENST00000456257 DCAF8L2P0C7V8 631 aa13.93□□□□□ -0.18
ERCC3-204ENST00000456257 NACADO15069 1562 aa13.88□□□□□ -0.19
ERCC3-204ENST00000456257 SHROOM4Q9ULL8 1493 aa13.72□□□□□ -0.21
ERCC3-204ENST00000456257 RB1CC1Q8TDY2 1594 aa13.69□□□□□ -0.22
ERCC3-204ENST00000456257 SCRIBQ14160 1630 aa13.51□□□□□ -0.25
ERCC3-204ENST00000456257 BICRAQ9NZM4 1560 aa13.32□□□□□ -0.28
ERCC3-204ENST00000456257 UNC13AQ9UPW8 1703 aa13.3□□□□□ -0.28
ERCC3-204ENST00000456257 RSF1Q96T23 1441 aaPredicted RBP13.28□□□□□ -0.28
ERCC3-204ENST00000456257 SUPT5HO00267 1087 aaKnown RBP13.27□□□□□ -0.29
ERCC3-204ENST00000456257 CECR2Q9BXF3 1484 aa13.23□□□□□ -0.29
ERCC3-204ENST00000456257 PABPN1Q86U42 306 aaKnown RBP eCLIP13.19□□□□□ -0.3
ERCC3-204ENST00000456257 MROH2BQ7Z745 1585 aa13.15□□□□□ -0.3
ERCC3-204ENST00000456257 BAZ1AQ9NRL2 1556 aaPredicted RBP13.15□□□□□ -0.3
ERCC3-204ENST00000456257 SMARCA4P51532 1647 aa13.06□□□□□ -0.32
ERCC3-204ENST00000456257 PEG3Q9GZU2 1588 aa13.02□□□□□ -0.33
ERCC3-204ENST00000456257 WIZO95785 1651 aa12.96□□□□□ -0.34
ERCC3-204ENST00000456257 ATAD2BQ9ULI0 1458 aa12.92□□□□□ -0.34
ERCC3-204ENST00000456257 TOP2AP11388 1531 aaKnown RBP12.9□□□□□ -0.34
ERCC3-204ENST00000456257 SMARCA2P51531 1590 aa12.89□□□□□ -0.35
ERCC3-204ENST00000456257 NCAPD3P42695 1498 aa12.88□□□□□ -0.35
ERCC3-204ENST00000456257 EIF4G1Q04637 1599 aaKnown RBP12.86□□□□□ -0.35
ERCC3-204ENST00000456257 SENP3Q9H4L4 574 aaPredicted RBP12.83□□□□□ -0.36
ERCC3-204ENST00000456257 CCDC88BA6NC98 1476 aa12.81□□□□□ -0.36
ERCC3-204ENST00000456257 HMGXB3Q12766 1538 aa12.78□□□□□ -0.36
ERCC3-204ENST00000456257 BAZ1BQ9UIG0 1483 aaKnown RBP12.76□□□□□ -0.37
ERCC3-204ENST00000456257 PHF23Q9BUL5 403 aaPredicted RBP12.66□□□□□ -0.38
ERCC3-204ENST00000456257 CC2D2AQ9P2K1 1620 aa12.65□□□□□ -0.38
ERCC3-204ENST00000456257 CFTRP13569 1480 aa12.56□□□□□ -0.4
ERCC3-204ENST00000456257 TRIM41Q8WV44 630 aa12.55□□□□□ -0.4
ERCC3-204ENST00000456257 CADPSQ9ULU8 1353 aa12.51□□□□□ -0.41
ERCC3-204ENST00000456257 DNAJC5BQ9UF47 199 aa12.44□□□□□ -0.42
ERCC3-204ENST00000456257 WRNQ14191 1432 aaPredicted RBP eCLIP12.44□□□□□ -0.42
ERCC3-204ENST00000456257 ABCC8Q09428 1581 aa12.4□□□□□ -0.42
ERCC3-204ENST00000456257 EEA1Q15075 1411 aa12.34□□□□□ -0.43
ERCC3-204ENST00000456257 LAMC3Q9Y6N6 1575 aa12.34□□□□□ -0.43
ERCC3-204ENST00000456257 TOP2BQ02880 1626 aa12.33□□□□□ -0.44
ERCC3-204ENST00000456257 SYNJ1O43426 1573 aa12.31□□□□□ -0.44
ERCC3-204ENST00000456257 PRDM2Q13029 1718 aa12.3□□□□□ -0.44
ERCC3-204ENST00000456257 CUX1P39880 1505 aa12.3□□□□□ -0.44
ERCC3-204ENST00000456257 BIVM-ERCC5R4GMW8 1640 aa12.29□□□□□ -0.44
ERCC3-204ENST00000456257 FANCD2Q9BXW9 1451 aa12.29□□□□□ -0.44
ERCC3-204ENST00000456257 LOC105371045A0A1W2PR82 267 aa12.29□□□□□ -0.44
ERCC3-204ENST00000456257 PDS5BQ9NTI5 1447 aa12.28□□□□□ -0.44
ERCC3-204ENST00000456257 NESP48681 1621 aa12.26□□□□□ -0.45
ERCC3-204ENST00000456257 CSRNP3Q8WYN3 585 aa12.26□□□□□ -0.45
ERCC3-204ENST00000456257 SOGA1O94964 1423 aa12.26□□□□□ -0.45
ERCC3-204ENST00000456257 RUSC2Q8N2Y8 1516 aa12.21□□□□□ -0.46
ERCC3-204ENST00000456257 FAM9AQ8IZU1 332 aaPredicted RBP12.19□□□□□ -0.46
ERCC3-204ENST00000456257 CEP164Q9UPV0 1460 aa12.19□□□□□ -0.46
ERCC3-204ENST00000456257 DNMBPQ6XZF7 1577 aa12.17□□□□□ -0.46
ERCC3-204ENST00000456257 TOPBP1Q92547 1522 aa12.16□□□□□ -0.46
ERCC3-204ENST00000456257 URB2Q14146 1524 aaKnown RBP12.15□□□□□ -0.46
ERCC3-204ENST00000456257 KIF27Q86VH2 1401 aa12.13□□□□□ -0.47
ERCC3-204ENST00000456257 TNIKQ9UKE5 1360 aa12.13□□□□□ -0.47
ERCC3-204ENST00000456257 FGD5Q6ZNL6 1462 aa12.13□□□□□ -0.47
ERCC3-204ENST00000456257 PRXQ9BXM0 1461 aa12.12□□□□□ -0.47
ERCC3-204ENST00000456257 IGF1RP08069 1367 aa12.11□□□□□ -0.47
ERCC3-204ENST00000456257 ABCA10Q8WWZ4 1543 aa12.11□□□□□ -0.47
ERCC3-204ENST00000456257 POLA1P09884 1462 aaPredicted RBP12.1□□□□□ -0.47
ERCC3-204ENST00000456257 KIF21BO75037 1637 aa12.08□□□□□ -0.48
ERCC3-204ENST00000456257 MRC2Q9UBG0 1479 aa12.07□□□□□ -0.48
ERCC3-204ENST00000456257 FOXD1Q16676 465 aa12.06□□□□□ -0.48
ERCC3-204ENST00000456257 GOLGA3Q08378 1498 aa12.06□□□□□ -0.48
ERCC3-204ENST00000456257 CUX2O14529 1486 aa12.05□□□□□ -0.48
ERCC3-204ENST00000456257 KIF21AQ7Z4S6 1674 aa12.03□□□□□ -0.48
ERCC3-204ENST00000456257 RAD54L2Q9Y4B4 1467 aa12.03□□□□□ -0.48
ERCC3-204ENST00000456257 ERICH3Q5RHP9 1530 aa12.03□□□□□ -0.48
ERCC3-204ENST00000456257 WDR62O43379 1518 aa12.01□□□□□ -0.49
ERCC3-204ENST00000456257 RAPGEF2Q9Y4G8 1499 aa12.01□□□□□ -0.49
ERCC3-204ENST00000456257 CARMIL1Q5VZK9 1371 aa12□□□□□ -0.49
ERCC3-204ENST00000456257 TARBP1Q13395 1621 aaKnown RBP11.98□□□□□ -0.49
ERCC3-204ENST00000456257 UBTFP17480 764 aaKnown RBP11.97□□□□□ -0.49
ERCC3-204ENST00000456257 IFT140Q96RY7 1462 aa11.95□□□□□ -0.5
ERCC3-204ENST00000456257 CEP162Q5TB80 1403 aa11.95□□□□□ -0.5
ERCC3-204ENST00000456257 WDR97A6NE52 1622 aa11.95□□□□□ -0.5
ERCC3-204ENST00000456257 TDRD9Q8NDG6 1382 aaKnown RBP11.94□□□□□ -0.5
ERCC3-204ENST00000456257 GAPVD1Q14C86 1478 aa11.94□□□□□ -0.5
ERCC3-204ENST00000456257 ERCC6Q03468 1493 aa11.93□□□□□ -0.5
ERCC3-204ENST00000456257 ABCA5Q8WWZ7 1642 aa11.93□□□□□ -0.5
ERCC3-204ENST00000456257 THOC2Q8NI27 1593 aaKnown RBP11.92□□□□□ -0.5
ERCC3-204ENST00000456257 EHMT2Q96KQ7 1210 aa11.89□□□□□ -0.51
ERCC3-204ENST00000456257 CLIP1P30622 1438 aa11.87□□□□□ -0.51
ERCC3-204ENST00000456257 GRIN2BQ13224 1484 aa11.87□□□□□ -0.51
ERCC3-204ENST00000456257 CUL7Q14999 1698 aa11.87□□□□□ -0.51
ERCC3-204ENST00000456257 AQRO60306 1485 aaKnown RBP eCLIP11.86□□□□□ -0.514e-7■■■■■ 41.8
ERCC3-204ENST00000456257 FHAD1B1AJZ9 1412 aa11.86□□□□□ -0.51
ERCC3-204ENST00000456257 ZNF608Q9ULD9 1512 aaPredicted RBP11.83□□□□□ -0.52
ERCC3-204ENST00000456257 VPS8Q8N3P4 1428 aa11.79□□□□□ -0.52
ERCC3-204ENST00000456257 TRIM26Q12899 539 aaPredicted RBP11.78□□□□□ -0.52
ERCC3-204ENST00000456257 MAGI1Q96QZ7 1491 aaPredicted RBP11.77□□□□□ -0.52
ERCC3-204ENST00000456257 ARHGAP35Q9NRY4 1499 aa11.77□□□□□ -0.52
ERCC3-204ENST00000456257 ARAP1Q96P48 1450 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms