RNA–Protein interactions for RNA: ENST00000453466.1

PMPCB-205, Transcript of peptidase, mitochondrial processing beta subunit, humanhuman

TSL 5

Gene PMPCB, Length 1,509 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PMPCB-205ENST00000453466 NISCHQ9Y2I1 1504 aa47.94■■■■■ 5.27
PMPCB-205ENST00000453466 CCDC180Q9P1Z9 1646 aa42.47■■■■■ 4.39
PMPCB-205ENST00000453466 ABCC9O60706 1549 aa41.53■■■■■ 4.24
PMPCB-205ENST00000453466 DCAF8L2P0C7V8 631 aa40.2■■■■■ 4.03
PMPCB-205ENST00000453466 NACADO15069 1562 aa39.99■■■■□ 3.99
PMPCB-205ENST00000453466 RB1CC1Q8TDY2 1594 aa39.99■■■■□ 3.99
PMPCB-205ENST00000453466 ZCCHC6Q5VYS8 1495 aaKnown RBP39.94■■■■□ 3.98
PMPCB-205ENST00000453466 MYO15BQ96JP2 1530 aa39.8■■■■□ 3.96
PMPCB-205ENST00000453466 DCAF1Q9Y4B6 1507 aa39.67■■■■□ 3.94
PMPCB-205ENST00000453466 PABPN1Q86U42 306 aaKnown RBP eCLIP38.92■■■■□ 3.82
PMPCB-205ENST00000453466 UNC13AQ9UPW8 1703 aa38.91■■■■□ 3.82
PMPCB-205ENST00000453466 SCRIBQ14160 1630 aa38.8■■■■□ 3.8
PMPCB-205ENST00000453466 BICRAQ9NZM4 1560 aa38.71■■■■□ 3.79
PMPCB-205ENST00000453466 SHROOM4Q9ULL8 1493 aa38.38■■■■□ 3.73
PMPCB-205ENST00000453466 DNAJC5BQ9UF47 199 aa38.04■■■■□ 3.68
PMPCB-205ENST00000453466 EIF4G1Q04637 1599 aaKnown RBP37.72■■■■□ 3.63
PMPCB-205ENST00000453466 CC2D2AQ9P2K1 1620 aa37.52■■■■□ 3.6
PMPCB-205ENST00000453466 CECR2Q9BXF3 1484 aa37.34■■■■□ 3.57
PMPCB-205ENST00000453466 BAZ1AQ9NRL2 1556 aaPredicted RBP37.15■■■■□ 3.54
PMPCB-205ENST00000453466 SMARCA4P51532 1647 aa37.12■■■■□ 3.53
PMPCB-205ENST00000453466 ATAD2BQ9ULI0 1458 aa36.95■■■■□ 3.51
PMPCB-205ENST00000453466 MROH2BQ7Z745 1585 aa36.94■■■■□ 3.5
PMPCB-205ENST00000453466 NCAPD3P42695 1498 aa36.94■■■■□ 3.5
PMPCB-205ENST00000453466 SMARCA2P51531 1590 aa36.91■■■■□ 3.5
PMPCB-205ENST00000453466 PEG3Q9GZU2 1588 aa36.76■■■■□ 3.48
PMPCB-205ENST00000453466 HMGXB3Q12766 1538 aa36.7■■■■□ 3.47
PMPCB-205ENST00000453466 BAZ1BQ9UIG0 1483 aaKnown RBP36.67■■■■□ 3.46
PMPCB-205ENST00000453466 RSF1Q96T23 1441 aaPredicted RBP36.62■■■■□ 3.45
PMPCB-205ENST00000453466 WIZO95785 1651 aa36.5■■■■□ 3.43
PMPCB-205ENST00000453466 TOP2AP11388 1531 aaKnown RBP36.16■■■■□ 3.38
PMPCB-205ENST00000453466 NESP48681 1621 aa35.95■■■■□ 3.35
PMPCB-205ENST00000453466 SUPT5HO00267 1087 aaKnown RBP35.91■■■■□ 3.34
PMPCB-205ENST00000453466 CADPSQ9ULU8 1353 aa35.9■■■■□ 3.34
PMPCB-205ENST00000453466 LAMC3Q9Y6N6 1575 aa35.88■■■■□ 3.34
PMPCB-205ENST00000453466 ERCC6Q03468 1493 aa35.82■■■■□ 3.33
PMPCB-205ENST00000453466 CCDC88BA6NC98 1476 aa35.79■■■■□ 3.32
PMPCB-205ENST00000453466 PDS5BQ9NTI5 1447 aa35.73■■■■□ 3.31
PMPCB-205ENST00000453466 CFTRP13569 1480 aa35.67■■■■□ 3.3
PMPCB-205ENST00000453466 FANCD2Q9BXW9 1451 aa35.44■■■■□ 3.26
PMPCB-205ENST00000453466 KIF21AQ7Z4S6 1674 aa35.44■■■■□ 3.26
PMPCB-205ENST00000453466 CEP164Q9UPV0 1460 aa35.38■■■■□ 3.25
PMPCB-205ENST00000453466 CUX2O14529 1486 aa35.36■■■■□ 3.25
PMPCB-205ENST00000453466 THOC2Q8NI27 1593 aaKnown RBP35.3■■■■□ 3.24
PMPCB-205ENST00000453466 MRC2Q9UBG0 1479 aa35.3■■■■□ 3.24
PMPCB-205ENST00000453466 PRDM2Q13029 1718 aa35.22■■■■□ 3.23
PMPCB-205ENST00000453466 WDR62O43379 1518 aa35.13■■■■□ 3.21
PMPCB-205ENST00000453466 URB2Q14146 1524 aaKnown RBP35.04■■■■□ 3.2
PMPCB-205ENST00000453466 ABCC8Q09428 1581 aa34.94■■■■□ 3.18
PMPCB-205ENST00000453466 TOPBP1Q92547 1522 aa34.87■■■■□ 3.17
PMPCB-205ENST00000453466 DNMBPQ6XZF7 1577 aa34.82■■■■□ 3.16
PMPCB-205ENST00000453466 IFT140Q96RY7 1462 aa34.65■■■■□ 3.14
PMPCB-205ENST00000453466 CUX1P39880 1505 aa34.64■■■■□ 3.14
PMPCB-205ENST00000453466 POLA1P09884 1462 aaPredicted RBP34.58■■■■□ 3.13
PMPCB-205ENST00000453466 WRNQ14191 1432 aaPredicted RBP eCLIP34.54■■■■□ 3.12
PMPCB-205ENST00000453466 FGD5Q6ZNL6 1462 aa34.52■■■■□ 3.12
PMPCB-205ENST00000453466 SOGA1O94964 1423 aa34.52■■■■□ 3.12
PMPCB-205ENST00000453466 RAD54L2Q9Y4B4 1467 aa34.45■■■■□ 3.11
PMPCB-205ENST00000453466 ZNF608Q9ULD9 1512 aaPredicted RBP34.44■■■■□ 3.1
PMPCB-205ENST00000453466 TARBP1Q13395 1621 aaKnown RBP34.42■■■■□ 3.1
PMPCB-205ENST00000453466 TOP2BQ02880 1626 aa34.37■■■■□ 3.09
PMPCB-205ENST00000453466 SYNJ1O43426 1573 aa34.34■■■■□ 3.09
PMPCB-205ENST00000453466 BIVM-ERCC5R4GMW8 1640 aa34.32■■■■□ 3.08
PMPCB-205ENST00000453466 AQRO60306 1485 aaKnown RBP eCLIP34.32■■■■□ 3.083e-6■■■□□ 17
PMPCB-205ENST00000453466 TDRD9Q8NDG6 1382 aaKnown RBP34.31■■■■□ 3.08
PMPCB-205ENST00000453466 EIF4G3O43432 1585 aaKnown RBP34.25■■■■□ 3.07
PMPCB-205ENST00000453466 DNAJC5Q9H3Z4 198 aa34.2■■■■□ 3.07
PMPCB-205ENST00000453466 ABCA10Q8WWZ4 1543 aa34.2■■■■□ 3.07
PMPCB-205ENST00000453466 WDR97A6NE52 1622 aa34.18■■■■□ 3.06
PMPCB-205ENST00000453466 GAPVD1Q14C86 1478 aa34.09■■■■□ 3.05
PMPCB-205ENST00000453466 GRIN2BQ13224 1484 aa34.07■■■■□ 3.04
PMPCB-205ENST00000453466 OSCARQ8IYS5 282 aa34.05■■■■□ 3.04
PMPCB-205ENST00000453466 FBLN2P98095 1184 aa33.98■■■■□ 3.03
PMPCB-205ENST00000453466 ABCA5Q8WWZ7 1642 aa33.97■■■■□ 3.03
PMPCB-205ENST00000453466 SNAPC4Q5SXM2 1469 aa33.96■■■■□ 3.03
PMPCB-205ENST00000453466 MAGI1Q96QZ7 1491 aaPredicted RBP33.94■■■■□ 3.02
PMPCB-205ENST00000453466 TRIM41Q8WV44 630 aa33.94■■■■□ 3.02
PMPCB-205ENST00000453466 CHMP7Q8WUX9 453 aaPredicted RBP33.91■■■■□ 3.02
PMPCB-205ENST00000453466 PBRM1Q86U86 1689 aa33.86■■■■□ 3.01
PMPCB-205ENST00000453466 KIF27Q86VH2 1401 aa33.83■■■■□ 3.01
PMPCB-205ENST00000453466 SYNJ2O15056 1496 aa33.82■■■■□ 3
PMPCB-205ENST00000453466 ERICH3Q5RHP9 1530 aa33.79■■■■□ 3
PMPCB-205ENST00000453466 CHD1O14646 1710 aa33.75■■■□□ 2.99
PMPCB-205ENST00000453466 FHAD1B1AJZ9 1412 aa33.72■■■□□ 2.99
PMPCB-205ENST00000453466 IGF1RP08069 1367 aa33.69■■■□□ 2.98
PMPCB-205ENST00000453466 ADAMTS12P58397 1594 aa33.65■■■□□ 2.98
PMPCB-205ENST00000453466 GRIN2AQ12879 1464 aa33.6■■■□□ 2.97
PMPCB-205ENST00000453466 CHIC1Q5VXU3 224 aa33.58■■■□□ 2.97
PMPCB-205ENST00000453466 RUSC2Q8N2Y8 1516 aa33.5■■■□□ 2.95
PMPCB-205ENST00000453466 CARMIL1Q5VZK9 1371 aa33.5■■■□□ 2.95
PMPCB-205ENST00000453466 CUL7Q14999 1698 aa33.46■■■□□ 2.95
PMPCB-205ENST00000453466 CLASP1Q7Z460 1538 aa33.45■■■□□ 2.94
PMPCB-205ENST00000453466 NUP160Q12769 1436 aa33.45■■■□□ 2.94
PMPCB-205ENST00000453466 CEP170Q5SW79 1584 aa33.37■■■□□ 2.93
PMPCB-205ENST00000453466 ARHGEF11O15085 1522 aa33.34■■■□□ 2.93
PMPCB-205ENST00000453466 CSRNP3Q8WYN3 585 aa33.29■■■□□ 2.92
PMPCB-205ENST00000453466 RIMBP3CA6NJZ7 1639 aa33.29■■■□□ 2.92
PMPCB-205ENST00000453466 RIMBP3BA6NNM3 1639 aa33.29■■■□□ 2.92
PMPCB-205ENST00000453466 RIMBP3Q9UFD9 1639 aa33.29■■■□□ 2.92
PMPCB-205ENST00000453466 RAPGEF2Q9Y4G8 1499 aa33.28■■■□□ 2.92
PMPCB-205ENST00000453466 EEA1Q15075 1411 aa33.27■■■□□ 2.92
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms