RNA–Protein interactions for RNA: ENST00000453285.1

SDC4P-201, Transcript of syndecan 4 pseudogene, humanhuman

BASIC

Gene SDC4P, Length 601 nt, Biotype processed pseudogene, Subcellular localisation Exosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4P-201ENST00000453285 NISCHQ9Y2I1 1504 aa13.91□□□□□ -0.18
SDC4P-201ENST00000453285 CCDC180Q9P1Z9 1646 aa12.22□□□□□ -0.45
SDC4P-201ENST00000453285 ZCCHC6Q5VYS8 1495 aaKnown RBP11.67□□□□□ -0.54
SDC4P-201ENST00000453285 ABCC9O60706 1549 aa11.55□□□□□ -0.56
SDC4P-201ENST00000453285 DCAF1Q9Y4B6 1507 aa11.52□□□□□ -0.57
SDC4P-201ENST00000453285 DCAF8L2P0C7V8 631 aa11.42□□□□□ -0.58
SDC4P-201ENST00000453285 MYO15BQ96JP2 1530 aa11.41□□□□□ -0.58
SDC4P-201ENST00000453285 NACADO15069 1562 aa11.37□□□□□ -0.59
SDC4P-201ENST00000453285 RB1CC1Q8TDY2 1594 aa11.28□□□□□ -0.6
SDC4P-201ENST00000453285 SHROOM4Q9ULL8 1493 aa11.22□□□□□ -0.61
SDC4P-201ENST00000453285 UNC13AQ9UPW8 1703 aa11.17□□□□□ -0.62
SDC4P-201ENST00000453285 SCRIBQ14160 1630 aa11.17□□□□□ -0.62
SDC4P-201ENST00000453285 BICRAQ9NZM4 1560 aa10.99□□□□□ -0.65
SDC4P-201ENST00000453285 PABPN1Q86U42 306 aaKnown RBP eCLIP10.86□□□□□ -0.67
SDC4P-201ENST00000453285 CECR2Q9BXF3 1484 aa10.81□□□□□ -0.68
SDC4P-201ENST00000453285 MROH2BQ7Z745 1585 aa10.75□□□□□ -0.69
SDC4P-201ENST00000453285 RSF1Q96T23 1441 aaPredicted RBP10.75□□□□□ -0.69
SDC4P-201ENST00000453285 SUPT5HO00267 1087 aaKnown RBP10.74□□□□□ -0.69
SDC4P-201ENST00000453285 BAZ1AQ9NRL2 1556 aaPredicted RBP10.73□□□□□ -0.69
SDC4P-201ENST00000453285 SMARCA4P51532 1647 aa10.73□□□□□ -0.69
SDC4P-201ENST00000453285 WIZO95785 1651 aa10.69□□□□□ -0.7
SDC4P-201ENST00000453285 EIF4G1Q04637 1599 aaKnown RBP10.62□□□□□ -0.71
SDC4P-201ENST00000453285 PEG3Q9GZU2 1588 aa10.61□□□□□ -0.71
SDC4P-201ENST00000453285 ATAD2BQ9ULI0 1458 aa10.55□□□□□ -0.72
SDC4P-201ENST00000453285 SMARCA2P51531 1590 aa10.54□□□□□ -0.72
SDC4P-201ENST00000453285 TOP2AP11388 1531 aaKnown RBP10.53□□□□□ -0.72
SDC4P-201ENST00000453285 DNAJC5BQ9UF47 199 aa10.52□□□□□ -0.73
SDC4P-201ENST00000453285 CC2D2AQ9P2K1 1620 aa10.5□□□□□ -0.73
SDC4P-201ENST00000453285 NCAPD3P42695 1498 aa10.48□□□□□ -0.73
SDC4P-201ENST00000453285 BAZ1BQ9UIG0 1483 aaKnown RBP10.46□□□□□ -0.74
SDC4P-201ENST00000453285 HMGXB3Q12766 1538 aa10.46□□□□□ -0.74
SDC4P-201ENST00000453285 DNAJC5Q9H3Z4 198 aa10.43□□□□□ -0.74
SDC4P-201ENST00000453285 CCDC88BA6NC98 1476 aa10.42□□□□□ -0.74
SDC4P-201ENST00000453285 CHIC1Q5VXU3 224 aa10.29□□□□□ -0.76
SDC4P-201ENST00000453285 PRDM2Q13029 1718 aa10.27□□□□□ -0.77
SDC4P-201ENST00000453285 CFTRP13569 1480 aa10.22□□□□□ -0.77
SDC4P-201ENST00000453285 CADPSQ9ULU8 1353 aa10.18□□□□□ -0.78
SDC4P-201ENST00000453285 ABCC8Q09428 1581 aa10.18□□□□□ -0.78
SDC4P-201ENST00000453285 LAMC3Q9Y6N6 1575 aa10.14□□□□□ -0.79
SDC4P-201ENST00000453285 NESP48681 1621 aa10.14□□□□□ -0.79
SDC4P-201ENST00000453285 TRIM41Q8WV44 630 aa10.11□□□□□ -0.79
SDC4P-201ENST00000453285 SYNJ1O43426 1573 aa10.1□□□□□ -0.79
SDC4P-201ENST00000453285 WRNQ14191 1432 aaPredicted RBP eCLIP10.09□□□□□ -0.79
SDC4P-201ENST00000453285 BIVM-ERCC5R4GMW8 1640 aa10.09□□□□□ -0.79
SDC4P-201ENST00000453285 TOP2BQ02880 1626 aa10.07□□□□□ -0.8
SDC4P-201ENST00000453285 KIF21AQ7Z4S6 1674 aa10.07□□□□□ -0.8
SDC4P-201ENST00000453285 FANCD2Q9BXW9 1451 aa10.07□□□□□ -0.8
SDC4P-201ENST00000453285 CUX1P39880 1505 aa10.06□□□□□ -0.8
SDC4P-201ENST00000453285 PDS5BQ9NTI5 1447 aa10.02□□□□□ -0.81
SDC4P-201ENST00000453285 CEP164Q9UPV0 1460 aa10.01□□□□□ -0.81
SDC4P-201ENST00000453285 DNMBPQ6XZF7 1577 aa9.99□□□□□ -0.81
SDC4P-201ENST00000453285 URB2Q14146 1524 aaKnown RBP9.97□□□□□ -0.81
SDC4P-201ENST00000453285 TOPBP1Q92547 1522 aa9.97□□□□□ -0.81
SDC4P-201ENST00000453285 SOGA1O94964 1423 aa9.95□□□□□ -0.82
SDC4P-201ENST00000453285 RUSC2Q8N2Y8 1516 aa9.95□□□□□ -0.82
SDC4P-201ENST00000453285 FGD5Q6ZNL6 1462 aa9.94□□□□□ -0.82
SDC4P-201ENST00000453285 FAM9AQ8IZU1 332 aaPredicted RBP9.92□□□□□ -0.82
SDC4P-201ENST00000453285 MRC2Q9UBG0 1479 aa9.91□□□□□ -0.82
SDC4P-201ENST00000453285 POLA1P09884 1462 aaPredicted RBP9.91□□□□□ -0.82
SDC4P-201ENST00000453285 EEA1Q15075 1411 aa9.9□□□□□ -0.82
SDC4P-201ENST00000453285 WDR97A6NE52 1622 aa9.9□□□□□ -0.82
SDC4P-201ENST00000453285 THOC2Q8NI27 1593 aaKnown RBP9.9□□□□□ -0.82
SDC4P-201ENST00000453285 WDR62O43379 1518 aa9.89□□□□□ -0.83
SDC4P-201ENST00000453285 LOC105371045A0A1W2PR82 267 aa9.88□□□□□ -0.83
SDC4P-201ENST00000453285 ERCC6Q03468 1493 aa9.87□□□□□ -0.83
SDC4P-201ENST00000453285 RAD54L2Q9Y4B4 1467 aa9.87□□□□□ -0.83
SDC4P-201ENST00000453285 TARBP1Q13395 1621 aaKnown RBP9.86□□□□□ -0.83
SDC4P-201ENST00000453285 CSRNP3Q8WYN3 585 aa9.86□□□□□ -0.83
SDC4P-201ENST00000453285 ABCA10Q8WWZ4 1543 aa9.86□□□□□ -0.83
SDC4P-201ENST00000453285 KIF27Q86VH2 1401 aa9.84□□□□□ -0.83
SDC4P-201ENST00000453285 CUX2O14529 1486 aa9.84□□□□□ -0.83
SDC4P-201ENST00000453285 KIF21BO75037 1637 aa9.83□□□□□ -0.84
SDC4P-201ENST00000453285 ABCA5Q8WWZ7 1642 aa9.82□□□□□ -0.84
SDC4P-201ENST00000453285 PRXQ9BXM0 1461 aa9.79□□□□□ -0.84
SDC4P-201ENST00000453285 IGF1RP08069 1367 aa9.78□□□□□ -0.84
SDC4P-201ENST00000453285 IFT140Q96RY7 1462 aa9.78□□□□□ -0.84
SDC4P-201ENST00000453285 PBRM1Q86U86 1689 aa9.77□□□□□ -0.84
SDC4P-201ENST00000453285 GOLGA3Q08378 1498 aa9.77□□□□□ -0.85
SDC4P-201ENST00000453285 ERICH3Q5RHP9 1530 aa9.77□□□□□ -0.85
SDC4P-201ENST00000453285 TDRD9Q8NDG6 1382 aaKnown RBP9.76□□□□□ -0.85
SDC4P-201ENST00000453285 EHMT2Q96KQ7 1210 aa9.76□□□□□ -0.85
SDC4P-201ENST00000453285 RAPGEF2Q9Y4G8 1499 aa9.76□□□□□ -0.85
SDC4P-201ENST00000453285 GAPVD1Q14C86 1478 aa9.75□□□□□ -0.85
SDC4P-201ENST00000453285 CUL7Q14999 1698 aa9.74□□□□□ -0.85
SDC4P-201ENST00000453285 ZNF608Q9ULD9 1512 aaPredicted RBP9.74□□□□□ -0.85
SDC4P-201ENST00000453285 TNIKQ9UKE5 1360 aa9.73□□□□□ -0.85
SDC4P-201ENST00000453285 AQRO60306 1485 aaKnown RBP eCLIP9.72□□□□□ -0.85
SDC4P-201ENST00000453285 EIF4G3O43432 1585 aaKnown RBP9.72□□□□□ -0.85
SDC4P-201ENST00000453285 CARMIL1Q5VZK9 1371 aa9.72□□□□□ -0.85
SDC4P-201ENST00000453285 UBTFP17480 764 aaKnown RBP9.69□□□□□ -0.86
SDC4P-201ENST00000453285 GRIN2BQ13224 1484 aa9.69□□□□□ -0.86
SDC4P-201ENST00000453285 ADAMTS12P58397 1594 aa9.67□□□□□ -0.86
SDC4P-201ENST00000453285 CTTNBP2Q8WZ74 1663 aa9.67□□□□□ -0.86
SDC4P-201ENST00000453285 FHAD1B1AJZ9 1412 aa9.65□□□□□ -0.87
SDC4P-201ENST00000453285 CEP162Q5TB80 1403 aa9.65□□□□□ -0.87
SDC4P-201ENST00000453285 SNAPC4Q5SXM2 1469 aa9.63□□□□□ -0.87
SDC4P-201ENST00000453285 MAGI1Q96QZ7 1491 aaPredicted RBP9.62□□□□□ -0.87
SDC4P-201ENST00000453285 AEBP2Q6ZN18 517 aaPredicted RBP9.6□□□□□ -0.87
SDC4P-201ENST00000453285 CLIP1P30622 1438 aa9.59□□□□□ -0.87
SDC4P-201ENST00000453285 CHD1O14646 1710 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms