RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 NISCHQ9Y2I1 1504 aa27.53■■■□□ 2
SCN9A-204ENST00000452182 AEBP2Q6ZN18 517 aaPredicted RBP24.62■■□□□ 1.53
SCN9A-204ENST00000452182 CHIC1Q5VXU3 224 aa24.61■■□□□ 1.53
SCN9A-204ENST00000452182 CCDC180Q9P1Z9 1646 aa24.36■■□□□ 1.49
SCN9A-204ENST00000452182 ABCC9O60706 1549 aa23.39■■□□□ 1.33
SCN9A-204ENST00000452182 ZCCHC6Q5VYS8 1495 aaKnown RBP23.02■■□□□ 1.28
SCN9A-204ENST00000452182 DCAF1Q9Y4B6 1507 aa22.85■■□□□ 1.25
SCN9A-204ENST00000452182 MYO15BQ96JP2 1530 aa22.82■■□□□ 1.24
SCN9A-204ENST00000452182 NACADO15069 1562 aa22.8■■□□□ 1.24
SCN9A-204ENST00000452182 DCAF8L2P0C7V8 631 aa22.75■■□□□ 1.23
SCN9A-204ENST00000452182 RB1CC1Q8TDY2 1594 aa22.72■■□□□ 1.23
SCN9A-204ENST00000452182 UNC13AQ9UPW8 1703 aa22.22■■□□□ 1.15
SCN9A-204ENST00000452182 SCRIBQ14160 1630 aa22.17■■□□□ 1.14
SCN9A-204ENST00000452182 BICRAQ9NZM4 1560 aa22.01■■□□□ 1.11
SCN9A-204ENST00000452182 PABPN1Q86U42 306 aaKnown RBP eCLIP21.88■■□□□ 1.09
SCN9A-204ENST00000452182 SHROOM4Q9ULL8 1493 aa21.87■■□□□ 1.09
SCN9A-204ENST00000452182 PHF23Q9BUL5 403 aaPredicted RBP21.66■■□□□ 1.06
SCN9A-204ENST00000452182 EIF4G1Q04637 1599 aaKnown RBP21.4■■□□□ 1.02
SCN9A-204ENST00000452182 CECR2Q9BXF3 1484 aa21.37■■□□□ 1.01
SCN9A-204ENST00000452182 BAZ1AQ9NRL2 1556 aaPredicted RBP21.33■■□□□ 1
SCN9A-204ENST00000452182 SMARCA4P51532 1647 aa21.29■■□□□ 1
SCN9A-204ENST00000452182 CC2D2AQ9P2K1 1620 aa21.21■□□□□ 0.99
SCN9A-204ENST00000452182 MROH2BQ7Z745 1585 aa21.2■□□□□ 0.98
SCN9A-204ENST00000452182 DNAJC5BQ9UF47 199 aa21.11■□□□□ 0.97
SCN9A-204ENST00000452182 PEG3Q9GZU2 1588 aa21.11■□□□□ 0.97
SCN9A-204ENST00000452182 RSF1Q96T23 1441 aaPredicted RBP21.1■□□□□ 0.97
SCN9A-204ENST00000452182 SMARCA2P51531 1590 aa21.08■□□□□ 0.97
SCN9A-204ENST00000452182 ATAD2BQ9ULI0 1458 aa21.07■□□□□ 0.96
SCN9A-204ENST00000452182 NCAPD3P42695 1498 aa21.03■□□□□ 0.96
SCN9A-204ENST00000452182 WIZO95785 1651 aa20.99■□□□□ 0.95
SCN9A-204ENST00000452182 HMGXB3Q12766 1538 aa20.97■□□□□ 0.95
SCN9A-204ENST00000452182 BAZ1BQ9UIG0 1483 aaKnown RBP20.91■□□□□ 0.94
SCN9A-204ENST00000452182 SENP3Q9H4L4 574 aaPredicted RBP20.88■□□□□ 0.93
SCN9A-204ENST00000452182 TOP2AP11388 1531 aaKnown RBP20.81■□□□□ 0.92
SCN9A-204ENST00000452182 SUPT5HO00267 1087 aaKnown RBP20.76■□□□□ 0.91
SCN9A-204ENST00000452182 CCDC88BA6NC98 1476 aa20.55■□□□□ 0.88
SCN9A-204ENST00000452182 LAMC3Q9Y6N6 1575 aa20.42■□□□□ 0.86
SCN9A-204ENST00000452182 CADPSQ9ULU8 1353 aa20.41■□□□□ 0.86
SCN9A-204ENST00000452182 CFTRP13569 1480 aa20.38■□□□□ 0.85
SCN9A-204ENST00000452182 NESP48681 1621 aa20.35■□□□□ 0.85
SCN9A-204ENST00000452182 PRDM2Q13029 1718 aa20.29■□□□□ 0.84
SCN9A-204ENST00000452182 PLPPR3Q6T4P5 718 aa20.25■□□□□ 0.83
SCN9A-204ENST00000452182 PDS5BQ9NTI5 1447 aa20.25■□□□□ 0.83
SCN9A-204ENST00000452182 FANCD2Q9BXW9 1451 aa20.16■□□□□ 0.82
SCN9A-204ENST00000452182 KIF21AQ7Z4S6 1674 aa20.15■□□□□ 0.82
SCN9A-204ENST00000452182 ERCC6Q03468 1493 aa20.13■□□□□ 0.81
SCN9A-204ENST00000452182 CEP164Q9UPV0 1460 aa20.11■□□□□ 0.81
SCN9A-204ENST00000452182 THOC2Q8NI27 1593 aaKnown RBP20.01■□□□□ 0.79
SCN9A-204ENST00000452182 MRC2Q9UBG0 1479 aa20.01■□□□□ 0.79
SCN9A-204ENST00000452182 WDR62O43379 1518 aa19.95■□□□□ 0.78
SCN9A-204ENST00000452182 ABCC8Q09428 1581 aa19.94■□□□□ 0.78
SCN9A-204ENST00000452182 URB2Q14146 1524 aaKnown RBP19.94■□□□□ 0.78
SCN9A-204ENST00000452182 DNMBPQ6XZF7 1577 aa19.91■□□□□ 0.78
SCN9A-204ENST00000452182 TOPBP1Q92547 1522 aa19.89■□□□□ 0.77
SCN9A-204ENST00000452182 WRNQ14191 1432 aaPredicted RBP eCLIP19.88■□□□□ 0.77
SCN9A-204ENST00000452182 CUX1P39880 1505 aa19.87■□□□□ 0.77
SCN9A-204ENST00000452182 CUX2O14529 1486 aa19.84■□□□□ 0.77
SCN9A-204ENST00000452182 TOP2BQ02880 1626 aa19.83■□□□□ 0.76
SCN9A-204ENST00000452182 BIVM-ERCC5R4GMW8 1640 aa19.83■□□□□ 0.76
SCN9A-204ENST00000452182 SYNJ1O43426 1573 aa19.82■□□□□ 0.76
SCN9A-204ENST00000452182 POLA1P09884 1462 aaPredicted RBP19.74■□□□□ 0.75
SCN9A-204ENST00000452182 FGD5Q6ZNL6 1462 aa19.74■□□□□ 0.75
SCN9A-204ENST00000452182 IFT140Q96RY7 1462 aa19.68■□□□□ 0.74
SCN9A-204ENST00000452182 TARBP1Q13395 1621 aaKnown RBP19.67■□□□□ 0.74
SCN9A-204ENST00000452182 SOGA1O94964 1423 aa19.66■□□□□ 0.74
SCN9A-204ENST00000452182 TRIM41Q8WV44 630 aa19.63■□□□□ 0.73
SCN9A-204ENST00000452182 RAD54L2Q9Y4B4 1467 aa19.62■□□□□ 0.73
SCN9A-204ENST00000452182 ABCA10Q8WWZ4 1543 aa19.6■□□□□ 0.73
SCN9A-204ENST00000452182 WDR97A6NE52 1622 aa19.6■□□□□ 0.73
SCN9A-204ENST00000452182 ZNF608Q9ULD9 1512 aaPredicted RBP19.53■□□□□ 0.72
SCN9A-204ENST00000452182 EIF4G3O43432 1585 aaKnown RBP19.5■□□□□ 0.71
SCN9A-204ENST00000452182 ABCA5Q8WWZ7 1642 aa19.49■□□□□ 0.71
SCN9A-204ENST00000452182 TDRD9Q8NDG6 1382 aaKnown RBP19.48■□□□□ 0.71
SCN9A-204ENST00000452182 AQRO60306 1485 aaKnown RBP eCLIP19.47■□□□□ 0.716e-14■□□□□ 9.4
SCN9A-204ENST00000452182 GAPVD1Q14C86 1478 aa19.44■□□□□ 0.7
SCN9A-204ENST00000452182 KIF27Q86VH2 1401 aa19.44■□□□□ 0.7
SCN9A-204ENST00000452182 GRIN2BQ13224 1484 aa19.4■□□□□ 0.7
SCN9A-204ENST00000452182 PBRM1Q86U86 1689 aa19.4■□□□□ 0.7
SCN9A-204ENST00000452182 ERICH3Q5RHP9 1530 aa19.38■□□□□ 0.69
SCN9A-204ENST00000452182 EEA1Q15075 1411 aa19.35■□□□□ 0.69
SCN9A-204ENST00000452182 RUSC2Q8N2Y8 1516 aa19.35■□□□□ 0.69
SCN9A-204ENST00000452182 MAGI1Q96QZ7 1491 aaPredicted RBP19.33■□□□□ 0.68
SCN9A-204ENST00000452182 IGF1RP08069 1367 aa19.31■□□□□ 0.68
SCN9A-204ENST00000452182 SNAPC4Q5SXM2 1469 aa19.3■□□□□ 0.68
SCN9A-204ENST00000452182 CUL7Q14999 1698 aa19.28■□□□□ 0.68
SCN9A-204ENST00000452182 ADAMTS12P58397 1594 aa19.26■□□□□ 0.67
SCN9A-204ENST00000452182 FOXD1Q16676 465 aa19.25■□□□□ 0.67
SCN9A-204ENST00000452182 FHAD1B1AJZ9 1412 aa19.24■□□□□ 0.67
SCN9A-204ENST00000452182 SYNJ2O15056 1496 aa19.23■□□□□ 0.67
SCN9A-204ENST00000452182 CSRNP3Q8WYN3 585 aa19.22■□□□□ 0.67
SCN9A-204ENST00000452182 CARMIL1Q5VZK9 1371 aa19.2■□□□□ 0.66
SCN9A-204ENST00000452182 CHD1O14646 1710 aa19.18■□□□□ 0.66
SCN9A-204ENST00000452182 PRXQ9BXM0 1461 aa19.17■□□□□ 0.66
SCN9A-204ENST00000452182 FAM9AQ8IZU1 332 aaPredicted RBP19.16■□□□□ 0.66
SCN9A-204ENST00000452182 CHMP7Q8WUX9 453 aaPredicted RBP19.16■□□□□ 0.66
SCN9A-204ENST00000452182 GRIN2AQ12879 1464 aa19.15■□□□□ 0.66
SCN9A-204ENST00000452182 RAPGEF2Q9Y4G8 1499 aa19.14■□□□□ 0.65
SCN9A-204ENST00000452182 FBLN2P98095 1184 aa19.11■□□□□ 0.65
SCN9A-204ENST00000452182 KIF21BO75037 1637 aa19.11■□□□□ 0.65
SCN9A-204ENST00000452182 NUP160Q12769 1436 aa19.07■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms