RNA–Protein interactions for RNA: ENST00000451542.5

SMPD4-212, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 5

Gene SMPD4, Length 796 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-212ENST00000451542 NISCHQ9Y2I1 1504 aa28.98■■■□□ 2.23
SMPD4-212ENST00000451542 CCDC180Q9P1Z9 1646 aa25.8■■□□□ 1.72
SMPD4-212ENST00000451542 ABCC9O60706 1549 aa25.19■■□□□ 1.62
SMPD4-212ENST00000451542 DCAF8L2P0C7V8 631 aa24.31■■□□□ 1.48
SMPD4-212ENST00000451542 RB1CC1Q8TDY2 1594 aa24.3■■□□□ 1.48
SMPD4-212ENST00000451542 NACADO15069 1562 aa24.27■■□□□ 1.48
SMPD4-212ENST00000451542 ZCCHC6Q5VYS8 1495 aaKnown RBP24.13■■□□□ 1.45
SMPD4-212ENST00000451542 MYO15BQ96JP2 1530 aa24.12■■□□□ 1.45
SMPD4-212ENST00000451542 DCAF1Q9Y4B6 1507 aa24■■□□□ 1.43
SMPD4-212ENST00000451542 UNC13AQ9UPW8 1703 aa23.64■■□□□ 1.37
SMPD4-212ENST00000451542 PABPN1Q86U42 306 aaKnown RBP eCLIP23.54■■□□□ 1.36
SMPD4-212ENST00000451542 SCRIBQ14160 1630 aa23.48■■□□□ 1.35
SMPD4-212ENST00000451542 BICRAQ9NZM4 1560 aa23.44■■□□□ 1.34
SMPD4-212ENST00000451542 SHROOM4Q9ULL8 1493 aa23.34■■□□□ 1.33
SMPD4-212ENST00000451542 DNAJC5BQ9UF47 199 aa23.03■■□□□ 1.28
SMPD4-212ENST00000451542 EIF4G1Q04637 1599 aaKnown RBP22.89■■□□□ 1.25
SMPD4-212ENST00000451542 CC2D2AQ9P2K1 1620 aa22.79■■□□□ 1.24
SMPD4-212ENST00000451542 CECR2Q9BXF3 1484 aa22.66■■□□□ 1.22
SMPD4-212ENST00000451542 BAZ1AQ9NRL2 1556 aaPredicted RBP22.51■■□□□ 1.19
SMPD4-212ENST00000451542 SMARCA4P51532 1647 aa22.48■■□□□ 1.19
SMPD4-212ENST00000451542 SMARCA2P51531 1590 aa22.4■■□□□ 1.18
SMPD4-212ENST00000451542 NCAPD3P42695 1498 aa22.37■■□□□ 1.17
SMPD4-212ENST00000451542 ATAD2BQ9ULI0 1458 aa22.36■■□□□ 1.17
SMPD4-212ENST00000451542 MROH2BQ7Z745 1585 aa22.29■■□□□ 1.16
SMPD4-212ENST00000451542 PEG3Q9GZU2 1588 aa22.26■■□□□ 1.15
SMPD4-212ENST00000451542 HMGXB3Q12766 1538 aa22.26■■□□□ 1.15
SMPD4-212ENST00000451542 BAZ1BQ9UIG0 1483 aaKnown RBP22.22■■□□□ 1.15
SMPD4-212ENST00000451542 RSF1Q96T23 1441 aaPredicted RBP22.06■■□□□ 1.12
SMPD4-212ENST00000451542 WIZO95785 1651 aa22.05■■□□□ 1.12
SMPD4-212ENST00000451542 TOP2AP11388 1531 aaKnown RBP21.87■■□□□ 1.09
SMPD4-212ENST00000451542 LAMC3Q9Y6N6 1575 aa21.8■■□□□ 1.08
SMPD4-212ENST00000451542 ERCC6Q03468 1493 aa21.8■■□□□ 1.08
SMPD4-212ENST00000451542 NESP48681 1621 aa21.75■■□□□ 1.07
SMPD4-212ENST00000451542 CADPSQ9ULU8 1353 aa21.74■■□□□ 1.07
SMPD4-212ENST00000451542 PDS5BQ9NTI5 1447 aa21.7■■□□□ 1.06
SMPD4-212ENST00000451542 CCDC88BA6NC98 1476 aa21.59■■□□□ 1.05
SMPD4-212ENST00000451542 SUPT5HO00267 1087 aaKnown RBP21.59■■□□□ 1.05
SMPD4-212ENST00000451542 CFTRP13569 1480 aa21.58■■□□□ 1.04
SMPD4-212ENST00000451542 CUX2O14529 1486 aa21.54■■□□□ 1.04
SMPD4-212ENST00000451542 KIF21AQ7Z4S6 1674 aa21.52■■□□□ 1.04
SMPD4-212ENST00000451542 FANCD2Q9BXW9 1451 aa21.47■■□□□ 1.03
SMPD4-212ENST00000451542 CEP164Q9UPV0 1460 aa21.47■■□□□ 1.03
SMPD4-212ENST00000451542 THOC2Q8NI27 1593 aaKnown RBP21.44■■□□□ 1.02
SMPD4-212ENST00000451542 PRDM2Q13029 1718 aa21.43■■□□□ 1.02
SMPD4-212ENST00000451542 MRC2Q9UBG0 1479 aa21.42■■□□□ 1.02
SMPD4-212ENST00000451542 WDR62O43379 1518 aa21.32■■□□□ 1
SMPD4-212ENST00000451542 ABCC8Q09428 1581 aa21.22■□□□□ 0.99
SMPD4-212ENST00000451542 URB2Q14146 1524 aaKnown RBP21.19■□□□□ 0.98
SMPD4-212ENST00000451542 TOPBP1Q92547 1522 aa21.11■□□□□ 0.97
SMPD4-212ENST00000451542 DNMBPQ6XZF7 1577 aa21.1■□□□□ 0.97
SMPD4-212ENST00000451542 IFT140Q96RY7 1462 aa21.02■□□□□ 0.96
SMPD4-212ENST00000451542 POLA1P09884 1462 aaPredicted RBP20.93■□□□□ 0.94
SMPD4-212ENST00000451542 CUX1P39880 1505 aa20.91■□□□□ 0.94
SMPD4-212ENST00000451542 SOGA1O94964 1423 aa20.89■□□□□ 0.94
SMPD4-212ENST00000451542 FGD5Q6ZNL6 1462 aa20.88■□□□□ 0.93
SMPD4-212ENST00000451542 WRNQ14191 1432 aaPredicted RBP eCLIP20.87■□□□□ 0.935e-6■■■■■ 34.5
SMPD4-212ENST00000451542 DNAJC5Q9H3Z4 198 aa20.85■□□□□ 0.93
SMPD4-212ENST00000451542 TARBP1Q13395 1621 aaKnown RBP20.84■□□□□ 0.93
SMPD4-212ENST00000451542 ZNF608Q9ULD9 1512 aaPredicted RBP20.83■□□□□ 0.93
SMPD4-212ENST00000451542 RAD54L2Q9Y4B4 1467 aa20.81■□□□□ 0.92
SMPD4-212ENST00000451542 EIF4G3O43432 1585 aaKnown RBP20.78■□□□□ 0.92
SMPD4-212ENST00000451542 WDR97A6NE52 1622 aa20.78■□□□□ 0.92
SMPD4-212ENST00000451542 TOP2BQ02880 1626 aa20.78■□□□□ 0.92
SMPD4-212ENST00000451542 BIVM-ERCC5R4GMW8 1640 aa20.77■□□□□ 0.92
SMPD4-212ENST00000451542 AQRO60306 1485 aaKnown RBP eCLIP20.75■□□□□ 0.914e-7■■■■□ 19.6
SMPD4-212ENST00000451542 TDRD9Q8NDG6 1382 aaKnown RBP20.74■□□□□ 0.91
SMPD4-212ENST00000451542 SYNJ1O43426 1573 aa20.72■□□□□ 0.91
SMPD4-212ENST00000451542 OSCARQ8IYS5 282 aa20.7■□□□□ 0.9
SMPD4-212ENST00000451542 ABCA10Q8WWZ4 1543 aa20.69■□□□□ 0.9
SMPD4-212ENST00000451542 GRIN2BQ13224 1484 aa20.65■□□□□ 0.9
SMPD4-212ENST00000451542 GAPVD1Q14C86 1478 aa20.64■□□□□ 0.89
SMPD4-212ENST00000451542 FBLN2P98095 1184 aa20.61■□□□□ 0.89
SMPD4-212ENST00000451542 MAGI1Q96QZ7 1491 aaPredicted RBP20.6■□□□□ 0.89
SMPD4-212ENST00000451542 ABCA5Q8WWZ7 1642 aa20.58■□□□□ 0.89
SMPD4-212ENST00000451542 SNAPC4Q5SXM2 1469 aa20.57■□□□□ 0.88
SMPD4-212ENST00000451542 CHMP7Q8WUX9 453 aaPredicted RBP20.56■□□□□ 0.88
SMPD4-212ENST00000451542 PBRM1Q86U86 1689 aa20.56■□□□□ 0.88
SMPD4-212ENST00000451542 CHD1O14646 1710 aa20.53■□□□□ 0.88
SMPD4-212ENST00000451542 SYNJ2O15056 1496 aa20.5■□□□□ 0.87
SMPD4-212ENST00000451542 KIF27Q86VH2 1401 aa20.47■□□□□ 0.87
SMPD4-212ENST00000451542 ERICH3Q5RHP9 1530 aa20.47■□□□□ 0.87
SMPD4-212ENST00000451542 TRIM41Q8WV44 630 aa20.45■□□□□ 0.86
SMPD4-212ENST00000451542 FHAD1B1AJZ9 1412 aa20.42■□□□□ 0.86
SMPD4-212ENST00000451542 ADAMTS12P58397 1594 aa20.38■□□□□ 0.85
SMPD4-212ENST00000451542 GRIN2AQ12879 1464 aa20.36■□□□□ 0.85
SMPD4-212ENST00000451542 IGF1RP08069 1367 aa20.31■□□□□ 0.84
SMPD4-212ENST00000451542 CUL7Q14999 1698 aa20.3■□□□□ 0.84
SMPD4-212ENST00000451542 CLASP1Q7Z460 1538 aa20.28■□□□□ 0.84
SMPD4-212ENST00000451542 ARHGEF11O15085 1522 aa20.27■□□□□ 0.83
SMPD4-212ENST00000451542 RIMBP3CA6NJZ7 1639 aa20.25■□□□□ 0.83
SMPD4-212ENST00000451542 RIMBP3BA6NNM3 1639 aa20.25■□□□□ 0.83
SMPD4-212ENST00000451542 RIMBP3Q9UFD9 1639 aa20.25■□□□□ 0.83
SMPD4-212ENST00000451542 NUP160Q12769 1436 aa20.25■□□□□ 0.83
SMPD4-212ENST00000451542 CARMIL1Q5VZK9 1371 aa20.23■□□□□ 0.83
SMPD4-212ENST00000451542 CEP170Q5SW79 1584 aa20.2■□□□□ 0.82
SMPD4-212ENST00000451542 RUSC2Q8N2Y8 1516 aa20.14■□□□□ 0.81
SMPD4-212ENST00000451542 CYB5RLQ6IPT4 315 aa20.14■□□□□ 0.81
SMPD4-212ENST00000451542 RAPGEF2Q9Y4G8 1499 aa20.11■□□□□ 0.81
SMPD4-212ENST00000451542 CHIC1Q5VXU3 224 aa20.11■□□□□ 0.81
SMPD4-212ENST00000451542 JPH4Q96JJ6 628 aa20.11■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms