RNA–Protein interactions for RNA: ENST00000451218.6

USP46-202, Transcript of ubiquitin specific peptidase 46, humanhuman

TSL 5 BASIC

Gene USP46, Length 4,622 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP46-202ENST00000451218 NISCHQ9Y2I1 1504 aa15.46■□□□□ 0.07
USP46-202ENST00000451218 CCDC180Q9P1Z9 1646 aa13.53□□□□□ -0.24
USP46-202ENST00000451218 ZCCHC6Q5VYS8 1495 aaKnown RBP13.09□□□□□ -0.31
USP46-202ENST00000451218 DCAF1Q9Y4B6 1507 aa12.85□□□□□ -0.35
USP46-202ENST00000451218 CHIC1Q5VXU3 224 aa12.78□□□□□ -0.36
USP46-202ENST00000451218 MYO15BQ96JP2 1530 aa12.64□□□□□ -0.39
USP46-202ENST00000451218 AEBP2Q6ZN18 517 aaPredicted RBP12.5□□□□□ -0.41
USP46-202ENST00000451218 UNC13AQ9UPW8 1703 aa12.42□□□□□ -0.42
USP46-202ENST00000451218 NACADO15069 1562 aa12.41□□□□□ -0.42
USP46-202ENST00000451218 SHROOM4Q9ULL8 1493 aa12.41□□□□□ -0.42
USP46-202ENST00000451218 ABCC9O60706 1549 aa12.39□□□□□ -0.43
USP46-202ENST00000451218 SCRIBQ14160 1630 aa12.33□□□□□ -0.44
USP46-202ENST00000451218 RB1CC1Q8TDY2 1594 aa12.22□□□□□ -0.45
USP46-202ENST00000451218 BICRAQ9NZM4 1560 aa12.16□□□□□ -0.46
USP46-202ENST00000451218 DCAF8L2P0C7V8 631 aa12.09□□□□□ -0.47
USP46-202ENST00000451218 CECR2Q9BXF3 1484 aa12.03□□□□□ -0.48
USP46-202ENST00000451218 RSF1Q96T23 1441 aaPredicted RBP12.01□□□□□ -0.49
USP46-202ENST00000451218 MROH2BQ7Z745 1585 aa11.99□□□□□ -0.49
USP46-202ENST00000451218 WIZO95785 1651 aa11.95□□□□□ -0.5
USP46-202ENST00000451218 EIF4G1Q04637 1599 aaKnown RBP11.93□□□□□ -0.5
USP46-202ENST00000451218 SMARCA4P51532 1647 aa11.91□□□□□ -0.5
USP46-202ENST00000451218 BAZ1AQ9NRL2 1556 aaPredicted RBP11.89□□□□□ -0.51
USP46-202ENST00000451218 PEG3Q9GZU2 1588 aa11.86□□□□□ -0.51
USP46-202ENST00000451218 SUPT5HO00267 1087 aaKnown RBP11.83□□□□□ -0.51
USP46-202ENST00000451218 TOP2AP11388 1531 aaKnown RBP11.74□□□□□ -0.53
USP46-202ENST00000451218 SMARCA2P51531 1590 aa11.71□□□□□ -0.53
USP46-202ENST00000451218 PABPN1Q86U42 306 aaKnown RBP eCLIP11.6□□□□□ -0.55
USP46-202ENST00000451218 CCDC88BA6NC98 1476 aa11.59□□□□□ -0.55
USP46-202ENST00000451218 ATAD2BQ9ULI0 1458 aa11.58□□□□□ -0.56
USP46-202ENST00000451218 HMGXB3Q12766 1538 aa11.52□□□□□ -0.57
USP46-202ENST00000451218 PRDM2Q13029 1718 aa11.46□□□□□ -0.58
USP46-202ENST00000451218 NCAPD3P42695 1498 aa11.45□□□□□ -0.58
USP46-202ENST00000451218 ABCC8Q09428 1581 aa11.44□□□□□ -0.58
USP46-202ENST00000451218 BAZ1BQ9UIG0 1483 aaKnown RBP11.4□□□□□ -0.58
USP46-202ENST00000451218 CC2D2AQ9P2K1 1620 aa11.4□□□□□ -0.58
USP46-202ENST00000451218 SYNJ1O43426 1573 aa11.37□□□□□ -0.59
USP46-202ENST00000451218 BIVM-ERCC5R4GMW8 1640 aa11.33□□□□□ -0.6
USP46-202ENST00000451218 TOP2BQ02880 1626 aa11.27□□□□□ -0.61
USP46-202ENST00000451218 CFTRP13569 1480 aa11.26□□□□□ -0.61
USP46-202ENST00000451218 RUSC2Q8N2Y8 1516 aa11.22□□□□□ -0.61
USP46-202ENST00000451218 CUX1P39880 1505 aa11.21□□□□□ -0.62
USP46-202ENST00000451218 PHF23Q9BUL5 403 aaPredicted RBP11.17□□□□□ -0.62
USP46-202ENST00000451218 SOGA1O94964 1423 aa11.17□□□□□ -0.62
USP46-202ENST00000451218 WRNQ14191 1432 aaPredicted RBP eCLIP11.15□□□□□ -0.62
USP46-202ENST00000451218 LOC105371045A0A1W2PR82 267 aa11.15□□□□□ -0.63
USP46-202ENST00000451218 WDR97A6NE52 1622 aa11.13□□□□□ -0.63
USP46-202ENST00000451218 KIF21BO75037 1637 aa11.1□□□□□ -0.63
USP46-202ENST00000451218 DNAJC5BQ9UF47 199 aa11.1□□□□□ -0.63
USP46-202ENST00000451218 TRIM41Q8WV44 630 aa11.09□□□□□ -0.63
USP46-202ENST00000451218 KIF21AQ7Z4S6 1674 aa11.08□□□□□ -0.64
USP46-202ENST00000451218 NESP48681 1621 aa11.07□□□□□ -0.64
USP46-202ENST00000451218 LAMC3Q9Y6N6 1575 aa11.05□□□□□ -0.64
USP46-202ENST00000451218 CADPSQ9ULU8 1353 aa11.05□□□□□ -0.64
USP46-202ENST00000451218 EEA1Q15075 1411 aa10.99□□□□□ -0.65
USP46-202ENST00000451218 DNMBPQ6XZF7 1577 aa10.99□□□□□ -0.65
USP46-202ENST00000451218 PRXQ9BXM0 1461 aa10.98□□□□□ -0.65
USP46-202ENST00000451218 URB2Q14146 1524 aaKnown RBP10.98□□□□□ -0.65
USP46-202ENST00000451218 FANCD2Q9BXW9 1451 aa10.97□□□□□ -0.65
USP46-202ENST00000451218 ERICH3Q5RHP9 1530 aa10.95□□□□□ -0.66
USP46-202ENST00000451218 TARBP1Q13395 1621 aaKnown RBP10.95□□□□□ -0.66
USP46-202ENST00000451218 ABCA5Q8WWZ7 1642 aa10.95□□□□□ -0.66
USP46-202ENST00000451218 TOPBP1Q92547 1522 aa10.94□□□□□ -0.66
USP46-202ENST00000451218 RAPGEF2Q9Y4G8 1499 aa10.94□□□□□ -0.66
USP46-202ENST00000451218 FGD5Q6ZNL6 1462 aa10.94□□□□□ -0.66
USP46-202ENST00000451218 POLA1P09884 1462 aaPredicted RBP10.91□□□□□ -0.66
USP46-202ENST00000451218 TNIKQ9UKE5 1360 aa10.89□□□□□ -0.67
USP46-202ENST00000451218 ABCA10Q8WWZ4 1543 aa10.89□□□□□ -0.67
USP46-202ENST00000451218 GOLGA3Q08378 1498 aa10.89□□□□□ -0.67
USP46-202ENST00000451218 THOC2Q8NI27 1593 aaKnown RBP10.88□□□□□ -0.67
USP46-202ENST00000451218 CEP164Q9UPV0 1460 aa10.88□□□□□ -0.67
USP46-202ENST00000451218 FAM9AQ8IZU1 332 aaPredicted RBP10.88□□□□□ -0.67
USP46-202ENST00000451218 CEP162Q5TB80 1403 aa10.87□□□□□ -0.67
USP46-202ENST00000451218 PLPPR3Q6T4P5 718 aa10.87□□□□□ -0.67
USP46-202ENST00000451218 RAD54L2Q9Y4B4 1467 aa10.84□□□□□ -0.67
USP46-202ENST00000451218 PBRM1Q86U86 1689 aa10.84□□□□□ -0.67
USP46-202ENST00000451218 WDR62O43379 1518 aa10.84□□□□□ -0.67
USP46-202ENST00000451218 CSRNP3Q8WYN3 585 aa10.83□□□□□ -0.68
USP46-202ENST00000451218 CUX2O14529 1486 aa10.82□□□□□ -0.68
USP46-202ENST00000451218 ARAP1Q96P48 1450 aa10.81□□□□□ -0.68
USP46-202ENST00000451218 CTTNBP2Q8WZ74 1663 aa10.81□□□□□ -0.68
USP46-202ENST00000451218 IGF1RP08069 1367 aa10.81□□□□□ -0.68
USP46-202ENST00000451218 CUL7Q14999 1698 aa10.8□□□□□ -0.68
USP46-202ENST00000451218 SENP3Q9H4L4 574 aaPredicted RBP10.8□□□□□ -0.68
USP46-202ENST00000451218 LRRIQ1Q96JM4 1722 aa10.8□□□□□ -0.68
USP46-202ENST00000451218 KIF27Q86VH2 1401 aa10.77□□□□□ -0.69
USP46-202ENST00000451218 ARHGAP35Q9NRY4 1499 aa10.74□□□□□ -0.69
USP46-202ENST00000451218 MRC2Q9UBG0 1479 aa10.73□□□□□ -0.69
USP46-202ENST00000451218 PDS5BQ9NTI5 1447 aa10.73□□□□□ -0.69
USP46-202ENST00000451218 EHMT2Q96KQ7 1210 aa10.73□□□□□ -0.69
USP46-202ENST00000451218 SAMD9Q5K651 1589 aa10.72□□□□□ -0.69
USP46-202ENST00000451218 ADAMTS12P58397 1594 aa10.72□□□□□ -0.69
USP46-202ENST00000451218 CLIP1P30622 1438 aa10.7□□□□□ -0.7
USP46-202ENST00000451218 EIF4G3O43432 1585 aaKnown RBP10.69□□□□□ -0.7
USP46-202ENST00000451218 VPS8Q8N3P4 1428 aa10.68□□□□□ -0.7
USP46-202ENST00000451218 CFAP43Q8NDM7 1665 aa10.68□□□□□ -0.7
USP46-202ENST00000451218 ZNF608Q9ULD9 1512 aaPredicted RBP10.66□□□□□ -0.7
USP46-202ENST00000451218 GAPVD1Q14C86 1478 aa10.64□□□□□ -0.71
USP46-202ENST00000451218 PCF11O94913 1555 aaKnown RBP10.63□□□□□ -0.71
USP46-202ENST00000451218 CARMIL1Q5VZK9 1371 aa10.63□□□□□ -0.71
USP46-202ENST00000451218 SNAPC4Q5SXM2 1469 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 135.2 ms