RNA–Protein interactions for RNA: ENST00000447283.6

GNE-203, Transcript of glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase, humanhuman

TSL 5 BASIC

Gene GNE, Length 2,174 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GNE-203ENST00000447283 NISCHQ9Y2I1 1504 aa25.04■■□□□ 1.6
GNE-203ENST00000447283 CCDC180Q9P1Z9 1646 aa21.88■■□□□ 1.09
GNE-203ENST00000447283 ZCCHC6Q5VYS8 1495 aaKnown RBP20.97■□□□□ 0.95
GNE-203ENST00000447283 ABCC9O60706 1549 aa20.92■□□□□ 0.94
GNE-203ENST00000447283 DCAF8L2P0C7V8 631 aa20.85■□□□□ 0.93
GNE-203ENST00000447283 DCAF1Q9Y4B6 1507 aa20.71■□□□□ 0.91
GNE-203ENST00000447283 MYO15BQ96JP2 1530 aa20.55■□□□□ 0.88
GNE-203ENST00000447283 NACADO15069 1562 aa20.48■□□□□ 0.87
GNE-203ENST00000447283 RB1CC1Q8TDY2 1594 aa20.34■□□□□ 0.85
GNE-203ENST00000447283 SHROOM4Q9ULL8 1493 aa20.3■□□□□ 0.84
GNE-203ENST00000447283 SCRIBQ14160 1630 aa20.1■□□□□ 0.81
GNE-203ENST00000447283 UNC13AQ9UPW8 1703 aa19.83■□□□□ 0.76
GNE-203ENST00000447283 PABPN1Q86U42 306 aaKnown RBP eCLIP19.73■□□□□ 0.75
GNE-203ENST00000447283 BICRAQ9NZM4 1560 aa19.69■□□□□ 0.74
GNE-203ENST00000447283 SUPT5HO00267 1087 aaKnown RBP19.49■□□□□ 0.71
GNE-203ENST00000447283 CECR2Q9BXF3 1484 aa19.47■□□□□ 0.71
GNE-203ENST00000447283 RSF1Q96T23 1441 aaPredicted RBP19.37■□□□□ 0.69
GNE-203ENST00000447283 BAZ1AQ9NRL2 1556 aaPredicted RBP19.35■□□□□ 0.69
GNE-203ENST00000447283 MROH2BQ7Z745 1585 aa19.32■□□□□ 0.68
GNE-203ENST00000447283 SMARCA4P51532 1647 aa19.26■□□□□ 0.67
GNE-203ENST00000447283 EIF4G1Q04637 1599 aaKnown RBP19.14■□□□□ 0.65
GNE-203ENST00000447283 WIZO95785 1651 aa19.13■□□□□ 0.65
GNE-203ENST00000447283 CHIC1Q5VXU3 224 aa19.1■□□□□ 0.65
GNE-203ENST00000447283 PEG3Q9GZU2 1588 aa19.04■□□□□ 0.64
GNE-203ENST00000447283 ATAD2BQ9ULI0 1458 aa19.04■□□□□ 0.64
GNE-203ENST00000447283 SMARCA2P51531 1590 aa19.01■□□□□ 0.63
GNE-203ENST00000447283 TOP2AP11388 1531 aaKnown RBP18.94■□□□□ 0.62
GNE-203ENST00000447283 NCAPD3P42695 1498 aa18.93■□□□□ 0.62
GNE-203ENST00000447283 BAZ1BQ9UIG0 1483 aaKnown RBP18.92■□□□□ 0.62
GNE-203ENST00000447283 CC2D2AQ9P2K1 1620 aa18.9■□□□□ 0.62
GNE-203ENST00000447283 HRCP23327 699 aa18.84■□□□□ 0.61
GNE-203ENST00000447283 HMGXB3Q12766 1538 aa18.83■□□□□ 0.61
GNE-203ENST00000447283 CCDC88BA6NC98 1476 aa18.78■□□□□ 0.6
GNE-203ENST00000447283 DNAJC5BQ9UF47 199 aa18.66■□□□□ 0.58
GNE-203ENST00000447283 PCGF6Q9BYE7 350 aa18.62■□□□□ 0.57
GNE-203ENST00000447283 LOC105371045A0A1W2PR82 267 aa18.47■□□□□ 0.55
GNE-203ENST00000447283 CADPSQ9ULU8 1353 aa18.44■□□□□ 0.54
GNE-203ENST00000447283 CFTRP13569 1480 aa18.44■□□□□ 0.54
GNE-203ENST00000447283 TRIM41Q8WV44 630 aa18.36■□□□□ 0.53
GNE-203ENST00000447283 TRIM26Q12899 539 aaPredicted RBP18.31■□□□□ 0.52
GNE-203ENST00000447283 PPARGC1BQ86YN6 1023 aaKnown RBP18.31■□□□□ 0.52
GNE-203ENST00000447283 NESP48681 1621 aa18.29■□□□□ 0.52
GNE-203ENST00000447283 ABCC8Q09428 1581 aa18.28■□□□□ 0.52
GNE-203ENST00000447283 LAMC3Q9Y6N6 1575 aa18.28■□□□□ 0.52
GNE-203ENST00000447283 WRNQ14191 1432 aaPredicted RBP eCLIP18.24■□□□□ 0.51
GNE-203ENST00000447283 PRDM2Q13029 1718 aa18.22■□□□□ 0.51
GNE-203ENST00000447283 FANCD2Q9BXW9 1451 aa18.21■□□□□ 0.51
GNE-203ENST00000447283 PDS5BQ9NTI5 1447 aa18.19■□□□□ 0.5
GNE-203ENST00000447283 SYNJ1O43426 1573 aa18.11■□□□□ 0.49
GNE-203ENST00000447283 CEP164Q9UPV0 1460 aa18.1■□□□□ 0.49
GNE-203ENST00000447283 TOP2BQ02880 1626 aa18.08■□□□□ 0.48
GNE-203ENST00000447283 CUX1P39880 1505 aa18.08■□□□□ 0.48
GNE-203ENST00000447283 ZEB1P37275 1124 aaPredicted RBP18.04■□□□□ 0.48
GNE-203ENST00000447283 BIVM-ERCC5R4GMW8 1640 aa18.03■□□□□ 0.48
GNE-203ENST00000447283 KIF21AQ7Z4S6 1674 aa18.01■□□□□ 0.47
GNE-203ENST00000447283 FAM9AQ8IZU1 332 aaPredicted RBP17.99■□□□□ 0.47
GNE-203ENST00000447283 ERCC6Q03468 1493 aa17.98■□□□□ 0.47
GNE-203ENST00000447283 DNMBPQ6XZF7 1577 aa17.98■□□□□ 0.47
GNE-203ENST00000447283 TOPBP1Q92547 1522 aa17.97■□□□□ 0.47
GNE-203ENST00000447283 URB2Q14146 1524 aaKnown RBP17.96■□□□□ 0.47
GNE-203ENST00000447283 SOGA1O94964 1423 aa17.95■□□□□ 0.46
GNE-203ENST00000447283 MRC2Q9UBG0 1479 aa17.93■□□□□ 0.46
GNE-203ENST00000447283 FGD5Q6ZNL6 1462 aa17.92■□□□□ 0.46
GNE-203ENST00000447283 EEA1Q15075 1411 aa17.89■□□□□ 0.45
GNE-203ENST00000447283 POLA1P09884 1462 aaPredicted RBP17.88■□□□□ 0.45
GNE-203ENST00000447283 RUSC2Q8N2Y8 1516 aa17.87■□□□□ 0.45
GNE-203ENST00000447283 CSRNP3Q8WYN3 585 aa17.85■□□□□ 0.45
GNE-203ENST00000447283 WDR62O43379 1518 aa17.82■□□□□ 0.44
GNE-203ENST00000447283 RAD54L2Q9Y4B4 1467 aa17.82■□□□□ 0.44
GNE-203ENST00000447283 KIF27Q86VH2 1401 aa17.81■□□□□ 0.44
GNE-203ENST00000447283 CUX2O14529 1486 aa17.79■□□□□ 0.44
GNE-203ENST00000447283 THOC2Q8NI27 1593 aaKnown RBP17.78■□□□□ 0.44
GNE-203ENST00000447283 ABCA10Q8WWZ4 1543 aa17.77■□□□□ 0.44
GNE-203ENST00000447283 EHMT2Q96KQ7 1210 aa17.73■□□□□ 0.43
GNE-203ENST00000447283 TDRD9Q8NDG6 1382 aaKnown RBP17.7■□□□□ 0.42
GNE-203ENST00000447283 IFT140Q96RY7 1462 aa17.69■□□□□ 0.42
GNE-203ENST00000447283 TARBP1Q13395 1621 aaKnown RBP17.69■□□□□ 0.42
GNE-203ENST00000447283 IGF1RP08069 1367 aa17.69■□□□□ 0.42
GNE-203ENST00000447283 WDR97A6NE52 1622 aa17.65■□□□□ 0.42
GNE-203ENST00000447283 GAPVD1Q14C86 1478 aa17.63■□□□□ 0.41
GNE-203ENST00000447283 PRXQ9BXM0 1461 aa17.62■□□□□ 0.41
GNE-203ENST00000447283 UBTFP17480 764 aaKnown RBP17.62■□□□□ 0.41
GNE-203ENST00000447283 GOLGA3Q08378 1498 aa17.61■□□□□ 0.41
GNE-203ENST00000447283 AQRO60306 1485 aaKnown RBP eCLIP17.6■□□□□ 0.418e-8■■■■■ 39.5
GNE-203ENST00000447283 KIF21BO75037 1637 aa17.6■□□□□ 0.41
GNE-203ENST00000447283 ABCA5Q8WWZ7 1642 aa17.6■□□□□ 0.41
GNE-203ENST00000447283 CARMIL1Q5VZK9 1371 aa17.6■□□□□ 0.41
GNE-203ENST00000447283 ZNF608Q9ULD9 1512 aaPredicted RBP17.59■□□□□ 0.41
GNE-203ENST00000447283 RAPGEF2Q9Y4G8 1499 aa17.57■□□□□ 0.4
GNE-203ENST00000447283 ERICH3Q5RHP9 1530 aa17.56■□□□□ 0.4
GNE-203ENST00000447283 TNIKQ9UKE5 1360 aa17.54■□□□□ 0.4
GNE-203ENST00000447283 GRIN2BQ13224 1484 aa17.53■□□□□ 0.4
GNE-203ENST00000447283 CUL7Q14999 1698 aa17.49■□□□□ 0.39
GNE-203ENST00000447283 EIF4G3O43432 1585 aaKnown RBP17.48■□□□□ 0.39
GNE-203ENST00000447283 CEP162Q5TB80 1403 aa17.48■□□□□ 0.39
GNE-203ENST00000447283 PBRM1Q86U86 1689 aa17.46■□□□□ 0.39
GNE-203ENST00000447283 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.46■□□□□ 0.39
GNE-203ENST00000447283 CCER1Q8TC90 406 aaPredicted RBP17.45■□□□□ 0.38
GNE-203ENST00000447283 FHAD1B1AJZ9 1412 aa17.44■□□□□ 0.38
GNE-203ENST00000447283 SCAF1Q9H7N4 1312 aaKnown RBP17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 162.6 ms