RNA–Protein interactions for RNA: ENST00000446690.2

COL6A4P1-201, Transcript of collagen type VI alpha 4 pseudogene 1, humanhuman

TSL 2 BASIC

Gene COL6A4P1, Length 2,336 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A4P1-201ENST00000446690 NISCHQ9Y2I1 1504 aa20.75■□□□□ 0.91
COL6A4P1-201ENST00000446690 CCDC180Q9P1Z9 1646 aa17.83■□□□□ 0.44
COL6A4P1-201ENST00000446690 ZCCHC6Q5VYS8 1495 aaKnown RBP17.45■□□□□ 0.38
COL6A4P1-201ENST00000446690 DCAF8L2P0C7V8 631 aa17.43■□□□□ 0.38
COL6A4P1-201ENST00000446690 SHROOM4Q9ULL8 1493 aa17.39■□□□□ 0.37
COL6A4P1-201ENST00000446690 DCAF1Q9Y4B6 1507 aa17.03■□□□□ 0.32
COL6A4P1-201ENST00000446690 ABCC9O60706 1549 aa16.93■□□□□ 0.3
COL6A4P1-201ENST00000446690 SUPT5HO00267 1087 aaKnown RBP16.88■□□□□ 0.29
COL6A4P1-201ENST00000446690 MYO15BQ96JP2 1530 aa16.71■□□□□ 0.27
COL6A4P1-201ENST00000446690 SCRIBQ14160 1630 aa16.64■□□□□ 0.25
COL6A4P1-201ENST00000446690 NACADO15069 1562 aa16.63■□□□□ 0.25
COL6A4P1-201ENST00000446690 RB1CC1Q8TDY2 1594 aa16.46■□□□□ 0.22
COL6A4P1-201ENST00000446690 RSF1Q96T23 1441 aaPredicted RBP16.26■□□□□ 0.19
COL6A4P1-201ENST00000446690 CECR2Q9BXF3 1484 aa16.2■□□□□ 0.18
COL6A4P1-201ENST00000446690 CHIC1Q5VXU3 224 aa16.17■□□□□ 0.18
COL6A4P1-201ENST00000446690 PABPN1Q86U42 306 aaKnown RBP eCLIP16.13■□□□□ 0.17
COL6A4P1-201ENST00000446690 MROH2BQ7Z745 1585 aa16.1■□□□□ 0.17
COL6A4P1-201ENST00000446690 UNC13AQ9UPW8 1703 aa16.08■□□□□ 0.17
COL6A4P1-201ENST00000446690 BAZ1AQ9NRL2 1556 aaPredicted RBP15.98■□□□□ 0.15
COL6A4P1-201ENST00000446690 WIZO95785 1651 aa15.97■□□□□ 0.15
COL6A4P1-201ENST00000446690 BICRAQ9NZM4 1560 aa15.96■□□□□ 0.15
COL6A4P1-201ENST00000446690 SMARCA4P51532 1647 aa15.87■□□□□ 0.13
COL6A4P1-201ENST00000446690 TRIM41Q8WV44 630 aa15.78■□□□□ 0.12
COL6A4P1-201ENST00000446690 TOP2AP11388 1531 aaKnown RBP15.74■□□□□ 0.11
COL6A4P1-201ENST00000446690 CCDC88BA6NC98 1476 aa15.68■□□□□ 0.1
COL6A4P1-201ENST00000446690 LOC105371045A0A1W2PR82 267 aa15.68■□□□□ 0.1
COL6A4P1-201ENST00000446690 SMARCA2P51531 1590 aa15.62■□□□□ 0.09
COL6A4P1-201ENST00000446690 FAM9AQ8IZU1 332 aaPredicted RBP15.61■□□□□ 0.09
COL6A4P1-201ENST00000446690 ATAD2BQ9ULI0 1458 aa15.61■□□□□ 0.09
COL6A4P1-201ENST00000446690 PEG3Q9GZU2 1588 aa15.59■□□□□ 0.09
COL6A4P1-201ENST00000446690 BAZ1BQ9UIG0 1483 aaKnown RBP15.55■□□□□ 0.08
COL6A4P1-201ENST00000446690 EIF4G1Q04637 1599 aaKnown RBP15.51■□□□□ 0.07
COL6A4P1-201ENST00000446690 EHMT2Q96KQ7 1210 aa15.5■□□□□ 0.07
COL6A4P1-201ENST00000446690 ABCC8Q09428 1581 aa15.46■□□□□ 0.07
COL6A4P1-201ENST00000446690 NCAPD3P42695 1498 aa15.39■□□□□ 0.05
COL6A4P1-201ENST00000446690 HMGXB3Q12766 1538 aa15.33■□□□□ 0.04
COL6A4P1-201ENST00000446690 WRNQ14191 1432 aaPredicted RBP eCLIP15.3■□□□□ 0.04
COL6A4P1-201ENST00000446690 SOGA1O94964 1423 aa15.26■□□□□ 0.03
COL6A4P1-201ENST00000446690 PCGF6Q9BYE7 350 aa15.23■□□□□ 0.03
COL6A4P1-201ENST00000446690 CC2D2AQ9P2K1 1620 aa15.22■□□□□ 0.03
COL6A4P1-201ENST00000446690 SYNJ1O43426 1573 aa15.19■□□□□ 0.02
COL6A4P1-201ENST00000446690 RUSC2Q8N2Y8 1516 aa15.19■□□□□ 0.02
COL6A4P1-201ENST00000446690 CSRNP3Q8WYN3 585 aa15.18■□□□□ 0.02
COL6A4P1-201ENST00000446690 CFTRP13569 1480 aa15.14■□□□□ 0.01
COL6A4P1-201ENST00000446690 EEA1Q15075 1411 aa15.13■□□□□ 0.01
COL6A4P1-201ENST00000446690 UBTFP17480 764 aaKnown RBP15.11■□□□□ 0.01
COL6A4P1-201ENST00000446690 CADPSQ9ULU8 1353 aa15.08■□□□□ 0
COL6A4P1-201ENST00000446690 TRIM26Q12899 539 aaPredicted RBP15.06■□□□□ 0
COL6A4P1-201ENST00000446690 TOP2BQ02880 1626 aa15.06■□□□□ 0
COL6A4P1-201ENST00000446690 CUX1P39880 1505 aa15.02□□□□□ -0.01
COL6A4P1-201ENST00000446690 PPARGC1BQ86YN6 1023 aaKnown RBP15.01□□□□□ -0.01
COL6A4P1-201ENST00000446690 TNIKQ9UKE5 1360 aa15.01□□□□□ -0.01
COL6A4P1-201ENST00000446690 BIVM-ERCC5R4GMW8 1640 aa14.99□□□□□ -0.01
COL6A4P1-201ENST00000446690 GOLGA3Q08378 1498 aa14.99□□□□□ -0.01
COL6A4P1-201ENST00000446690 CEP162Q5TB80 1403 aa14.98□□□□□ -0.01
COL6A4P1-201ENST00000446690 DNAJC5BQ9UF47 199 aa14.97□□□□□ -0.01
COL6A4P1-201ENST00000446690 CEP164Q9UPV0 1460 aa14.96□□□□□ -0.02
COL6A4P1-201ENST00000446690 NESP48681 1621 aa14.93□□□□□ -0.02
COL6A4P1-201ENST00000446690 RANGAP1P46060 587 aaPredicted RBP14.92□□□□□ -0.02
COL6A4P1-201ENST00000446690 FANCD2Q9BXW9 1451 aa14.92□□□□□ -0.02
COL6A4P1-201ENST00000446690 PRDM2Q13029 1718 aa14.91□□□□□ -0.02
COL6A4P1-201ENST00000446690 RAPGEF2Q9Y4G8 1499 aa14.9□□□□□ -0.02
COL6A4P1-201ENST00000446690 KIF21BO75037 1637 aa14.89□□□□□ -0.03
COL6A4P1-201ENST00000446690 HRCP23327 699 aa14.89□□□□□ -0.03
COL6A4P1-201ENST00000446690 KIF27Q86VH2 1401 aa14.89□□□□□ -0.03
COL6A4P1-201ENST00000446690 TTBK1Q5TCY1 1321 aaPredicted RBP14.87□□□□□ -0.03
COL6A4P1-201ENST00000446690 FGD5Q6ZNL6 1462 aa14.84□□□□□ -0.03
COL6A4P1-201ENST00000446690 CUX2O14529 1486 aa14.83□□□□□ -0.04
COL6A4P1-201ENST00000446690 CLIP1P30622 1438 aa14.81□□□□□ -0.04
COL6A4P1-201ENST00000446690 PRXQ9BXM0 1461 aa14.8□□□□□ -0.04
COL6A4P1-201ENST00000446690 LAMC3Q9Y6N6 1575 aa14.79□□□□□ -0.04
COL6A4P1-201ENST00000446690 PDS5BQ9NTI5 1447 aa14.76□□□□□ -0.05
COL6A4P1-201ENST00000446690 TOPBP1Q92547 1522 aa14.76□□□□□ -0.05
COL6A4P1-201ENST00000446690 IGF1RP08069 1367 aa14.76□□□□□ -0.05
COL6A4P1-201ENST00000446690 DNMBPQ6XZF7 1577 aa14.75□□□□□ -0.05
COL6A4P1-201ENST00000446690 RAD54L2Q9Y4B4 1467 aa14.75□□□□□ -0.05
COL6A4P1-201ENST00000446690 ERICH3Q5RHP9 1530 aa14.75□□□□□ -0.05
COL6A4P1-201ENST00000446690 POLA1P09884 1462 aaPredicted RBP14.72□□□□□ -0.05
COL6A4P1-201ENST00000446690 CARMIL1Q5VZK9 1371 aa14.7□□□□□ -0.06
COL6A4P1-201ENST00000446690 URB2Q14146 1524 aaKnown RBP14.7□□□□□ -0.06
COL6A4P1-201ENST00000446690 APLP2Q06481 763 aa14.7□□□□□ -0.06
COL6A4P1-201ENST00000446690 VPS8Q8N3P4 1428 aa14.67□□□□□ -0.06
COL6A4P1-201ENST00000446690 ABCA10Q8WWZ4 1543 aa14.65□□□□□ -0.06
COL6A4P1-201ENST00000446690 KIF21AQ7Z4S6 1674 aa14.63□□□□□ -0.07
COL6A4P1-201ENST00000446690 TDRD9Q8NDG6 1382 aaKnown RBP14.62□□□□□ -0.07
COL6A4P1-201ENST00000446690 ARAP1Q96P48 1450 aa14.59□□□□□ -0.07
COL6A4P1-201ENST00000446690 ARHGAP35Q9NRY4 1499 aa14.55□□□□□ -0.08
COL6A4P1-201ENST00000446690 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.54□□□□□ -0.08
COL6A4P1-201ENST00000446690 P3H3Q8IVL6 736 aa14.54□□□□□ -0.08
COL6A4P1-201ENST00000446690 ZEB1P37275 1124 aaPredicted RBP14.54□□□□□ -0.08
COL6A4P1-201ENST00000446690 GAPVD1Q14C86 1478 aa14.53□□□□□ -0.08
COL6A4P1-201ENST00000446690 MRC2Q9UBG0 1479 aa14.53□□□□□ -0.08
COL6A4P1-201ENST00000446690 CCER1Q8TC90 406 aaPredicted RBP14.5□□□□□ -0.09
COL6A4P1-201ENST00000446690 KANK4Q5T7N3 995 aaPredicted RBP14.49□□□□□ -0.09
COL6A4P1-201ENST00000446690 WDR97A6NE52 1622 aa14.49□□□□□ -0.09
COL6A4P1-201ENST00000446690 HNRNPUL2Q1KMD3 747 aaKnown RBP14.48□□□□□ -0.09
COL6A4P1-201ENST00000446690 ERCC6Q03468 1493 aa14.48□□□□□ -0.09
COL6A4P1-201ENST00000446690 CUL7Q14999 1698 aa14.48□□□□□ -0.09
COL6A4P1-201ENST00000446690 ATP1B4Q9UN42 357 aaPredicted RBP14.47□□□□□ -0.09
COL6A4P1-201ENST00000446690 ABCA5Q8WWZ7 1642 aa14.47□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms