RNA–Protein interactions for RNA: ENST00000446317.1

SF3A3P1-201, Transcript of splicing factor 3a, subunit 3 pseudogene 1, humanhuman

BASIC

Gene SF3A3P1, Length 1,477 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3P1-201ENST00000446317 NISCHQ9Y2I1 1504 aa17.69■□□□□ 0.42
SF3A3P1-201ENST00000446317 CCDC180Q9P1Z9 1646 aa15.49■□□□□ 0.07
SF3A3P1-201ENST00000446317 ABCC9O60706 1549 aa15.17■□□□□ 0.02
SF3A3P1-201ENST00000446317 DCAF8L2P0C7V8 631 aa14.96□□□□□ -0.01
SF3A3P1-201ENST00000446317 ZCCHC6Q5VYS8 1495 aaKnown RBP14.79□□□□□ -0.04
SF3A3P1-201ENST00000446317 AEBP2Q6ZN18 517 aaPredicted RBP14.65□□□□□ -0.06
SF3A3P1-201ENST00000446317 NACADO15069 1562 aa14.52□□□□□ -0.09
SF3A3P1-201ENST00000446317 RB1CC1Q8TDY2 1594 aa14.52□□□□□ -0.09
SF3A3P1-201ENST00000446317 DCAF1Q9Y4B6 1507 aa14.49□□□□□ -0.09
SF3A3P1-201ENST00000446317 SHROOM4Q9ULL8 1493 aa14.48□□□□□ -0.09
SF3A3P1-201ENST00000446317 SCRIBQ14160 1630 aa14.41□□□□□ -0.1
SF3A3P1-201ENST00000446317 MYO15BQ96JP2 1530 aa14.39□□□□□ -0.11
SF3A3P1-201ENST00000446317 PABPN1Q86U42 306 aaKnown RBP eCLIP14.31□□□□□ -0.12
SF3A3P1-201ENST00000446317 UNC13AQ9UPW8 1703 aa14.25□□□□□ -0.13
SF3A3P1-201ENST00000446317 BICRAQ9NZM4 1560 aa14.13□□□□□ -0.15
SF3A3P1-201ENST00000446317 CHIC1Q5VXU3 224 aa13.9□□□□□ -0.18
SF3A3P1-201ENST00000446317 CECR2Q9BXF3 1484 aa13.88□□□□□ -0.19
SF3A3P1-201ENST00000446317 EIF4G1Q04637 1599 aaKnown RBP13.73□□□□□ -0.21
SF3A3P1-201ENST00000446317 MROH2BQ7Z745 1585 aa13.73□□□□□ -0.21
SF3A3P1-201ENST00000446317 SUPT5HO00267 1087 aaKnown RBP13.72□□□□□ -0.21
SF3A3P1-201ENST00000446317 DNAJC5BQ9UF47 199 aa13.7□□□□□ -0.22
SF3A3P1-201ENST00000446317 SMARCA4P51532 1647 aa13.69□□□□□ -0.22
SF3A3P1-201ENST00000446317 BAZ1AQ9NRL2 1556 aaPredicted RBP13.66□□□□□ -0.22
SF3A3P1-201ENST00000446317 RSF1Q96T23 1441 aaPredicted RBP13.64□□□□□ -0.23
SF3A3P1-201ENST00000446317 CC2D2AQ9P2K1 1620 aa13.63□□□□□ -0.23
SF3A3P1-201ENST00000446317 WIZO95785 1651 aa13.62□□□□□ -0.23
SF3A3P1-201ENST00000446317 ATAD2BQ9ULI0 1458 aa13.54□□□□□ -0.24
SF3A3P1-201ENST00000446317 BAZ1BQ9UIG0 1483 aaKnown RBP13.47□□□□□ -0.25
SF3A3P1-201ENST00000446317 SMARCA2P51531 1590 aa13.47□□□□□ -0.25
SF3A3P1-201ENST00000446317 PEG3Q9GZU2 1588 aa13.41□□□□□ -0.26
SF3A3P1-201ENST00000446317 NCAPD3P42695 1498 aa13.41□□□□□ -0.26
SF3A3P1-201ENST00000446317 TOP2AP11388 1531 aaKnown RBP13.39□□□□□ -0.27
SF3A3P1-201ENST00000446317 HMGXB3Q12766 1538 aa13.36□□□□□ -0.27
SF3A3P1-201ENST00000446317 CCDC88BA6NC98 1476 aa13.29□□□□□ -0.28
SF3A3P1-201ENST00000446317 NESP48681 1621 aa13.22□□□□□ -0.29
SF3A3P1-201ENST00000446317 CADPSQ9ULU8 1353 aa13.1□□□□□ -0.31
SF3A3P1-201ENST00000446317 CFTRP13569 1480 aa13.05□□□□□ -0.32
SF3A3P1-201ENST00000446317 LAMC3Q9Y6N6 1575 aa13.02□□□□□ -0.33
SF3A3P1-201ENST00000446317 ERCC6Q03468 1493 aa13.01□□□□□ -0.33
SF3A3P1-201ENST00000446317 KIF21AQ7Z4S6 1674 aa13□□□□□ -0.33
SF3A3P1-201ENST00000446317 FANCD2Q9BXW9 1451 aa12.99□□□□□ -0.33
SF3A3P1-201ENST00000446317 ABCC8Q09428 1581 aa12.99□□□□□ -0.33
SF3A3P1-201ENST00000446317 PDS5BQ9NTI5 1447 aa12.95□□□□□ -0.34
SF3A3P1-201ENST00000446317 CEP164Q9UPV0 1460 aa12.93□□□□□ -0.34
SF3A3P1-201ENST00000446317 PRDM2Q13029 1718 aa12.93□□□□□ -0.34
SF3A3P1-201ENST00000446317 URB2Q14146 1524 aaKnown RBP12.87□□□□□ -0.35
SF3A3P1-201ENST00000446317 CUX1P39880 1505 aa12.85□□□□□ -0.35
SF3A3P1-201ENST00000446317 SYNJ1O43426 1573 aa12.85□□□□□ -0.35
SF3A3P1-201ENST00000446317 WRNQ14191 1432 aaPredicted RBP eCLIP12.85□□□□□ -0.35
SF3A3P1-201ENST00000446317 MRC2Q9UBG0 1479 aa12.84□□□□□ -0.35
SF3A3P1-201ENST00000446317 TRIM41Q8WV44 630 aa12.83□□□□□ -0.36
SF3A3P1-201ENST00000446317 THOC2Q8NI27 1593 aaKnown RBP12.83□□□□□ -0.36
SF3A3P1-201ENST00000446317 TOPBP1Q92547 1522 aa12.81□□□□□ -0.36
SF3A3P1-201ENST00000446317 DNMBPQ6XZF7 1577 aa12.78□□□□□ -0.36
SF3A3P1-201ENST00000446317 FGD5Q6ZNL6 1462 aa12.76□□□□□ -0.37
SF3A3P1-201ENST00000446317 RAD54L2Q9Y4B4 1467 aa12.76□□□□□ -0.37
SF3A3P1-201ENST00000446317 WDR62O43379 1518 aa12.76□□□□□ -0.37
SF3A3P1-201ENST00000446317 FAM9AQ8IZU1 332 aaPredicted RBP12.75□□□□□ -0.37
SF3A3P1-201ENST00000446317 TOP2BQ02880 1626 aa12.74□□□□□ -0.37
SF3A3P1-201ENST00000446317 POLA1P09884 1462 aaPredicted RBP12.72□□□□□ -0.37
SF3A3P1-201ENST00000446317 BIVM-ERCC5R4GMW8 1640 aa12.72□□□□□ -0.37
SF3A3P1-201ENST00000446317 EHMT2Q96KQ7 1210 aa12.71□□□□□ -0.38
SF3A3P1-201ENST00000446317 SOGA1O94964 1423 aa12.69□□□□□ -0.38
SF3A3P1-201ENST00000446317 CUX2O14529 1486 aa12.69□□□□□ -0.38
SF3A3P1-201ENST00000446317 TDRD9Q8NDG6 1382 aaKnown RBP12.66□□□□□ -0.38
SF3A3P1-201ENST00000446317 RUSC2Q8N2Y8 1516 aa12.66□□□□□ -0.38
SF3A3P1-201ENST00000446317 ZNF608Q9ULD9 1512 aaPredicted RBP12.66□□□□□ -0.38
SF3A3P1-201ENST00000446317 AQRO60306 1485 aaKnown RBP eCLIP12.63□□□□□ -0.39
SF3A3P1-201ENST00000446317 TARBP1Q13395 1621 aaKnown RBP12.62□□□□□ -0.39
SF3A3P1-201ENST00000446317 IFT140Q96RY7 1462 aa12.61□□□□□ -0.39
SF3A3P1-201ENST00000446317 WDR97A6NE52 1622 aa12.57□□□□□ -0.4
SF3A3P1-201ENST00000446317 EIF4G3O43432 1585 aaKnown RBP12.56□□□□□ -0.4
SF3A3P1-201ENST00000446317 ABCA10Q8WWZ4 1543 aa12.56□□□□□ -0.4
SF3A3P1-201ENST00000446317 GAPVD1Q14C86 1478 aa12.53□□□□□ -0.4
SF3A3P1-201ENST00000446317 KIF27Q86VH2 1401 aa12.53□□□□□ -0.4
SF3A3P1-201ENST00000446317 FBLN2P98095 1184 aa12.51□□□□□ -0.41
SF3A3P1-201ENST00000446317 ABCA5Q8WWZ7 1642 aa12.51□□□□□ -0.41
SF3A3P1-201ENST00000446317 SENP3Q9H4L4 574 aaPredicted RBP12.5□□□□□ -0.41
SF3A3P1-201ENST00000446317 SNAPC4Q5SXM2 1469 aa12.49□□□□□ -0.41
SF3A3P1-201ENST00000446317 PBRM1Q86U86 1689 aa12.49□□□□□ -0.41
SF3A3P1-201ENST00000446317 LOC105371045A0A1W2PR82 267 aa12.46□□□□□ -0.41
SF3A3P1-201ENST00000446317 CSRNP3Q8WYN3 585 aa12.46□□□□□ -0.41
SF3A3P1-201ENST00000446317 IGF1RP08069 1367 aa12.46□□□□□ -0.41
SF3A3P1-201ENST00000446317 GRIN2BQ13224 1484 aa12.46□□□□□ -0.42
SF3A3P1-201ENST00000446317 RANGAP1P46060 587 aaPredicted RBP12.45□□□□□ -0.42
SF3A3P1-201ENST00000446317 CARMIL1Q5VZK9 1371 aa12.41□□□□□ -0.42
SF3A3P1-201ENST00000446317 CHMP7Q8WUX9 453 aaPredicted RBP12.4□□□□□ -0.42
SF3A3P1-201ENST00000446317 ADAMTS12P58397 1594 aa12.4□□□□□ -0.42
SF3A3P1-201ENST00000446317 RAPGEF2Q9Y4G8 1499 aa12.39□□□□□ -0.43
SF3A3P1-201ENST00000446317 ERICH3Q5RHP9 1530 aa12.39□□□□□ -0.43
SF3A3P1-201ENST00000446317 EEA1Q15075 1411 aa12.37□□□□□ -0.43
SF3A3P1-201ENST00000446317 UBTFP17480 764 aaKnown RBP12.37□□□□□ -0.43
SF3A3P1-201ENST00000446317 FHAD1B1AJZ9 1412 aa12.36□□□□□ -0.43
SF3A3P1-201ENST00000446317 CHD1O14646 1710 aa12.36□□□□□ -0.43
SF3A3P1-201ENST00000446317 PHF23Q9BUL5 403 aaPredicted RBP12.35□□□□□ -0.43
SF3A3P1-201ENST00000446317 MAGI1Q96QZ7 1491 aaPredicted RBP12.35□□□□□ -0.43
SF3A3P1-201ENST00000446317 CUL7Q14999 1698 aa12.34□□□□□ -0.43
SF3A3P1-201ENST00000446317 SYNJ2O15056 1496 aa12.34□□□□□ -0.43
SF3A3P1-201ENST00000446317 PRXQ9BXM0 1461 aa12.34□□□□□ -0.43
SF3A3P1-201ENST00000446317 GRIN2AQ12879 1464 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms