RNA–Protein interactions for RNA: ENST00000444942.1

LINC00642-203, long intergenic non-protein coding RNA 642, humanhuman

TSL 1 (best)

Gene LINC00642, Length 1,376 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00642-203ENST00000444942 NISCHQ9Y2I1 1504 aa23.1■■□□□ 1.29
LINC00642-203ENST00000444942 ABCC9O60706 1549 aa22.09■■□□□ 1.13
LINC00642-203ENST00000444942 DNAJC5BQ9UF47 199 aa21.61■■□□□ 1.05
LINC00642-203ENST00000444942 CCDC180Q9P1Z9 1646 aa21.24■□□□□ 0.99
LINC00642-203ENST00000444942 RB1CC1Q8TDY2 1594 aa20.65■□□□□ 0.9
LINC00642-203ENST00000444942 DNAJC5Q9H3Z4 198 aa20.59■□□□□ 0.89
LINC00642-203ENST00000444942 PABPN1Q86U42 306 aaKnown RBP eCLIP20.36■□□□□ 0.85
LINC00642-203ENST00000444942 UNC13AQ9UPW8 1703 aa20.28■□□□□ 0.84
LINC00642-203ENST00000444942 NACADO15069 1562 aa20.26■□□□□ 0.83
LINC00642-203ENST00000444942 BICRAQ9NZM4 1560 aa20.1■□□□□ 0.81
LINC00642-203ENST00000444942 CECR2Q9BXF3 1484 aa20.02■□□□□ 0.8
LINC00642-203ENST00000444942 CC2D2AQ9P2K1 1620 aa19.96■□□□□ 0.79
LINC00642-203ENST00000444942 DCAF8L2P0C7V8 631 aa19.81■□□□□ 0.76
LINC00642-203ENST00000444942 SHROOM4Q9ULL8 1493 aa19.73■□□□□ 0.75
LINC00642-203ENST00000444942 MYO15BQ96JP2 1530 aa19.67■□□□□ 0.74
LINC00642-203ENST00000444942 EIF4G1Q04637 1599 aaKnown RBP19.67■□□□□ 0.74
LINC00642-203ENST00000444942 CUX2O14529 1486 aa19.49■□□□□ 0.71
LINC00642-203ENST00000444942 SCRIBQ14160 1630 aa19.21■□□□□ 0.67
LINC00642-203ENST00000444942 TRIM41Q8WV44 630 aa19.21■□□□□ 0.67
LINC00642-203ENST00000444942 ERCC6Q03468 1493 aa19.14■□□□□ 0.65
LINC00642-203ENST00000444942 DCAF1Q9Y4B6 1507 aa19.05■□□□□ 0.64
LINC00642-203ENST00000444942 ZCCHC6Q5VYS8 1495 aaKnown RBP18.93■□□□□ 0.62
LINC00642-203ENST00000444942 THOC2Q8NI27 1593 aaKnown RBP18.78■□□□□ 0.6
LINC00642-203ENST00000444942 NESP48681 1621 aa18.71■□□□□ 0.59
LINC00642-203ENST00000444942 NCAPD3P42695 1498 aa18.7■□□□□ 0.58
LINC00642-203ENST00000444942 SMARCA2P51531 1590 aa18.53■□□□□ 0.56
LINC00642-203ENST00000444942 KIF21AQ7Z4S6 1674 aa18.51■□□□□ 0.55
LINC00642-203ENST00000444942 HMGXB3Q12766 1538 aa18.5■□□□□ 0.55
LINC00642-203ENST00000444942 ATAD2BQ9ULI0 1458 aa18.49■□□□□ 0.55
LINC00642-203ENST00000444942 BAZ1AQ9NRL2 1556 aaPredicted RBP18.48■□□□□ 0.55
LINC00642-203ENST00000444942 LAMC3Q9Y6N6 1575 aa18.47■□□□□ 0.55
LINC00642-203ENST00000444942 OSCARQ8IYS5 282 aa18.38■□□□□ 0.53
LINC00642-203ENST00000444942 PDS5BQ9NTI5 1447 aa18.34■□□□□ 0.53
LINC00642-203ENST00000444942 RIMBP3CA6NJZ7 1639 aa18.33■□□□□ 0.53
LINC00642-203ENST00000444942 RIMBP3BA6NNM3 1639 aa18.33■□□□□ 0.53
LINC00642-203ENST00000444942 RIMBP3Q9UFD9 1639 aa18.33■□□□□ 0.53
LINC00642-203ENST00000444942 AEBP2Q6ZN18 517 aaPredicted RBP18.32■□□□□ 0.52
LINC00642-203ENST00000444942 WDR62O43379 1518 aa18.27■□□□□ 0.52
LINC00642-203ENST00000444942 MRC2Q9UBG0 1479 aa18.26■□□□□ 0.51
LINC00642-203ENST00000444942 SMARCA4P51532 1647 aa18.25■□□□□ 0.51
LINC00642-203ENST00000444942 BAZ1BQ9UIG0 1483 aaKnown RBP18.24■□□□□ 0.51
LINC00642-203ENST00000444942 ARHGEF11O15085 1522 aa18.14■□□□□ 0.49
LINC00642-203ENST00000444942 TRHP20396 242 aaPredicted RBP18.11■□□□□ 0.49
LINC00642-203ENST00000444942 PEG3Q9GZU2 1588 aa18.11■□□□□ 0.49
LINC00642-203ENST00000444942 CADPSQ9ULU8 1353 aa18.05■□□□□ 0.48
LINC00642-203ENST00000444942 CYB5RLQ6IPT4 315 aa18■□□□□ 0.47
LINC00642-203ENST00000444942 CEP164Q9UPV0 1460 aa17.98■□□□□ 0.47
LINC00642-203ENST00000444942 ARAP1Q96P48 1450 aa17.88■□□□□ 0.45
LINC00642-203ENST00000444942 FANCD2Q9BXW9 1451 aa17.87■□□□□ 0.45
LINC00642-203ENST00000444942 URB2Q14146 1524 aaKnown RBP17.8■□□□□ 0.44
LINC00642-203ENST00000444942 MROH2BQ7Z745 1585 aa17.78■□□□□ 0.44
LINC00642-203ENST00000444942 ILDR1Q86SU0 546 aaPredicted RBP17.75■□□□□ 0.43
LINC00642-203ENST00000444942 ZNF608Q9ULD9 1512 aaPredicted RBP17.72■□□□□ 0.43
LINC00642-203ENST00000444942 CHD1O14646 1710 aa17.72■□□□□ 0.43
LINC00642-203ENST00000444942 RSF1Q96T23 1441 aaPredicted RBP17.71■□□□□ 0.42
LINC00642-203ENST00000444942 CFTRP13569 1480 aa17.66■□□□□ 0.42
LINC00642-203ENST00000444942 IFT140Q96RY7 1462 aa17.66■□□□□ 0.42
LINC00642-203ENST00000444942 EIF4G3O43432 1585 aaKnown RBP17.62■□□□□ 0.41
LINC00642-203ENST00000444942 WIZO95785 1651 aa17.55■□□□□ 0.4
LINC00642-203ENST00000444942 PRDM2Q13029 1718 aa17.53■□□□□ 0.4
LINC00642-203ENST00000444942 FBLN2P98095 1184 aa17.45■□□□□ 0.38
LINC00642-203ENST00000444942 CLASP1Q7Z460 1538 aa17.45■□□□□ 0.38
LINC00642-203ENST00000444942 TOPBP1Q92547 1522 aa17.43■□□□□ 0.38
LINC00642-203ENST00000444942 AQRO60306 1485 aaKnown RBP eCLIP17.42■□□□□ 0.38
LINC00642-203ENST00000444942 TARBP1Q13395 1621 aaKnown RBP17.4■□□□□ 0.38
LINC00642-203ENST00000444942 SYNJ1O43426 1573 aa17.33■□□□□ 0.37
LINC00642-203ENST00000444942 ABCC8Q09428 1581 aa17.33■□□□□ 0.36
LINC00642-203ENST00000444942 GAPVD1Q14C86 1478 aa17.31■□□□□ 0.36
LINC00642-203ENST00000444942 KIF13AQ9H1H9 1805 aa17.3■□□□□ 0.36
LINC00642-203ENST00000444942 DNMBPQ6XZF7 1577 aa17.3■□□□□ 0.36
LINC00642-203ENST00000444942 KDM4FA0A1W2PPD8 638 aa17.26■□□□□ 0.35
LINC00642-203ENST00000444942 TOP2AP11388 1531 aaKnown RBP17.24■□□□□ 0.35
LINC00642-203ENST00000444942 SNAPC4Q5SXM2 1469 aa17.22■□□□□ 0.35
LINC00642-203ENST00000444942 CHMP7Q8WUX9 453 aaPredicted RBP17.18■□□□□ 0.34
LINC00642-203ENST00000444942 POLA1P09884 1462 aaPredicted RBP17.18■□□□□ 0.34
LINC00642-203ENST00000444942 WDR97A6NE52 1622 aa17.16■□□□□ 0.34
LINC00642-203ENST00000444942 MAGI1Q96QZ7 1491 aaPredicted RBP17.15■□□□□ 0.34
LINC00642-203ENST00000444942 TDRD9Q8NDG6 1382 aaKnown RBP17.14■□□□□ 0.33
LINC00642-203ENST00000444942 SYNJ2O15056 1496 aa17.11■□□□□ 0.33
LINC00642-203ENST00000444942 RAD54L2Q9Y4B4 1467 aa17.11■□□□□ 0.33
LINC00642-203ENST00000444942 ERCC6L2Q5T890 1561 aa17.1■□□□□ 0.33
LINC00642-203ENST00000444942 SOGA1O94964 1423 aa17.06■□□□□ 0.32
LINC00642-203ENST00000444942 GRIN2BQ13224 1484 aa17.04■□□□□ 0.32
LINC00642-203ENST00000444942 KDM6BO15054 1643 aa17.04■□□□□ 0.32
LINC00642-203ENST00000444942 CCDC88BA6NC98 1476 aa17.02■□□□□ 0.32
LINC00642-203ENST00000444942 HECW2Q9P2P5 1572 aa17.02■□□□□ 0.32
LINC00642-203ENST00000444942 PBRM1Q86U86 1689 aa16.99■□□□□ 0.31
LINC00642-203ENST00000444942 FBXO41Q8TF61 875 aa16.97■□□□□ 0.31
LINC00642-203ENST00000444942 ABCC10Q5T3U5 1492 aa16.97■□□□□ 0.31
LINC00642-203ENST00000444942 CEP170Q5SW79 1584 aa16.96■□□□□ 0.31
LINC00642-203ENST00000444942 FAM69CQ0P6D2 419 aa16.94■□□□□ 0.3
LINC00642-203ENST00000444942 DIP2BQ9P265 1576 aa16.93■□□□□ 0.3
LINC00642-203ENST00000444942 FGD5Q6ZNL6 1462 aa16.92■□□□□ 0.3
LINC00642-203ENST00000444942 SHROOM2Q13796 1616 aa16.92■□□□□ 0.3
LINC00642-203ENST00000444942 ADGRL1O94910 1474 aa16.9■□□□□ 0.3
LINC00642-203ENST00000444942 TSPOAP1O95153 1857 aa16.89■□□□□ 0.29
LINC00642-203ENST00000444942 MAPKBP1O60336 1514 aa16.87■□□□□ 0.29
LINC00642-203ENST00000444942 LMTK3Q96Q04 1460 aa16.84■□□□□ 0.29
LINC00642-203ENST00000444942 GRIN2AQ12879 1464 aa16.83■□□□□ 0.29
LINC00642-203ENST00000444942 NUP160Q12769 1436 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms