RNA–Protein interactions for RNA: ENST00000443621.1

LINC00393-201, long intergenic non-protein coding RNA 393, humanhuman

TSL 3 BASIC

Gene LINC00393, Length 282 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00393-201ENST00000443621 NISCHQ9Y2I1 1504 aa6.4□□□□□ -1.39
LINC00393-201ENST00000443621 CCDC180Q9P1Z9 1646 aa5.65□□□□□ -1.51
LINC00393-201ENST00000443621 DCAF1Q9Y4B6 1507 aa5.41□□□□□ -1.54
LINC00393-201ENST00000443621 ZCCHC6Q5VYS8 1495 aaKnown RBP5.38□□□□□ -1.55
LINC00393-201ENST00000443621 MYO15BQ96JP2 1530 aa5.38□□□□□ -1.55
LINC00393-201ENST00000443621 NACADO15069 1562 aa5.25□□□□□ -1.57
LINC00393-201ENST00000443621 RB1CC1Q8TDY2 1594 aa5.16□□□□□ -1.58
LINC00393-201ENST00000443621 ABCC9O60706 1549 aa5.1□□□□□ -1.59
LINC00393-201ENST00000443621 SHROOM4Q9ULL8 1493 aa5.08□□□□□ -1.6
LINC00393-201ENST00000443621 DCAF8L2P0C7V8 631 aa5.07□□□□□ -1.6
LINC00393-201ENST00000443621 SCRIBQ14160 1630 aa5□□□□□ -1.61
LINC00393-201ENST00000443621 UNC13AQ9UPW8 1703 aa4.99□□□□□ -1.61
LINC00393-201ENST00000443621 BAZ1AQ9NRL2 1556 aaPredicted RBP4.96□□□□□ -1.62
LINC00393-201ENST00000443621 BICRAQ9NZM4 1560 aa4.95□□□□□ -1.62
LINC00393-201ENST00000443621 RSF1Q96T23 1441 aaPredicted RBP4.93□□□□□ -1.62
LINC00393-201ENST00000443621 PEG3Q9GZU2 1588 aa4.93□□□□□ -1.62
LINC00393-201ENST00000443621 SMARCA4P51532 1647 aa4.9□□□□□ -1.63
LINC00393-201ENST00000443621 MROH2BQ7Z745 1585 aa4.87□□□□□ -1.63
LINC00393-201ENST00000443621 SMARCA2P51531 1590 aa4.87□□□□□ -1.63
LINC00393-201ENST00000443621 CECR2Q9BXF3 1484 aa4.86□□□□□ -1.63
LINC00393-201ENST00000443621 SUPT5HO00267 1087 aaKnown RBP4.85□□□□□ -1.63
LINC00393-201ENST00000443621 TOP2AP11388 1531 aaKnown RBP4.85□□□□□ -1.63
LINC00393-201ENST00000443621 HMGXB3Q12766 1538 aa4.82□□□□□ -1.64
LINC00393-201ENST00000443621 NCAPD3P42695 1498 aa4.82□□□□□ -1.64
LINC00393-201ENST00000443621 WIZO95785 1651 aa4.82□□□□□ -1.64
LINC00393-201ENST00000443621 ATAD2BQ9ULI0 1458 aa4.81□□□□□ -1.64
LINC00393-201ENST00000443621 EIF4G1Q04637 1599 aaKnown RBP4.8□□□□□ -1.64
LINC00393-201ENST00000443621 BAZ1BQ9UIG0 1483 aaKnown RBP4.77□□□□□ -1.65
LINC00393-201ENST00000443621 PABPN1Q86U42 306 aaKnown RBP eCLIP4.77□□□□□ -1.65
LINC00393-201ENST00000443621 CHIC1Q5VXU3 224 aa4.76□□□□□ -1.65
LINC00393-201ENST00000443621 CCDC88BA6NC98 1476 aa4.75□□□□□ -1.65
LINC00393-201ENST00000443621 PRDM2Q13029 1718 aa4.71□□□□□ -1.66
LINC00393-201ENST00000443621 CFTRP13569 1480 aa4.7□□□□□ -1.66
LINC00393-201ENST00000443621 EEA1Q15075 1411 aa4.7□□□□□ -1.66
LINC00393-201ENST00000443621 CC2D2AQ9P2K1 1620 aa4.69□□□□□ -1.66
LINC00393-201ENST00000443621 TRIM41Q8WV44 630 aa4.67□□□□□ -1.66
LINC00393-201ENST00000443621 LAMC3Q9Y6N6 1575 aa4.66□□□□□ -1.66
LINC00393-201ENST00000443621 CADPSQ9ULU8 1353 aa4.65□□□□□ -1.66
LINC00393-201ENST00000443621 ABCC8Q09428 1581 aa4.65□□□□□ -1.66
LINC00393-201ENST00000443621 BIVM-ERCC5R4GMW8 1640 aa4.65□□□□□ -1.66
LINC00393-201ENST00000443621 WRNQ14191 1432 aaPredicted RBP eCLIP4.65□□□□□ -1.663e-8■■■□□ 15.1
LINC00393-201ENST00000443621 TOP2BQ02880 1626 aa4.64□□□□□ -1.67
LINC00393-201ENST00000443621 PDS5BQ9NTI5 1447 aa4.6□□□□□ -1.67
LINC00393-201ENST00000443621 WDR97A6NE52 1622 aa4.58□□□□□ -1.68
LINC00393-201ENST00000443621 KIF21BO75037 1637 aa4.58□□□□□ -1.68
LINC00393-201ENST00000443621 SYNJ1O43426 1573 aa4.58□□□□□ -1.68
LINC00393-201ENST00000443621 DNMBPQ6XZF7 1577 aa4.57□□□□□ -1.68
LINC00393-201ENST00000443621 CUX1P39880 1505 aa4.56□□□□□ -1.68
LINC00393-201ENST00000443621 ERICH3Q5RHP9 1530 aa4.56□□□□□ -1.68
LINC00393-201ENST00000443621 FANCD2Q9BXW9 1451 aa4.56□□□□□ -1.68
LINC00393-201ENST00000443621 CEP164Q9UPV0 1460 aa4.56□□□□□ -1.68
LINC00393-201ENST00000443621 KIF27Q86VH2 1401 aa4.56□□□□□ -1.68
LINC00393-201ENST00000443621 CSRNP3Q8WYN3 585 aa4.56□□□□□ -1.68
LINC00393-201ENST00000443621 TNIKQ9UKE5 1360 aa4.55□□□□□ -1.68
LINC00393-201ENST00000443621 GOLGA3Q08378 1498 aa4.55□□□□□ -1.68
LINC00393-201ENST00000443621 ABCA10Q8WWZ4 1543 aa4.54□□□□□ -1.68
LINC00393-201ENST00000443621 PRXQ9BXM0 1461 aa4.54□□□□□ -1.68
LINC00393-201ENST00000443621 TOPBP1Q92547 1522 aa4.53□□□□□ -1.68
LINC00393-201ENST00000443621 SOGA1O94964 1423 aa4.52□□□□□ -1.69
LINC00393-201ENST00000443621 CUL7Q14999 1698 aa4.51□□□□□ -1.69
LINC00393-201ENST00000443621 FGD5Q6ZNL6 1462 aa4.51□□□□□ -1.69
LINC00393-201ENST00000443621 WDR62O43379 1518 aa4.51□□□□□ -1.69
LINC00393-201ENST00000443621 POLA1P09884 1462 aaPredicted RBP4.5□□□□□ -1.69
LINC00393-201ENST00000443621 MRC2Q9UBG0 1479 aa4.5□□□□□ -1.69
LINC00393-201ENST00000443621 KIF21AQ7Z4S6 1674 aa4.49□□□□□ -1.69
LINC00393-201ENST00000443621 URB2Q14146 1524 aaKnown RBP4.49□□□□□ -1.69
LINC00393-201ENST00000443621 IGF1RP08069 1367 aa4.49□□□□□ -1.69
LINC00393-201ENST00000443621 NESP48681 1621 aa4.48□□□□□ -1.69
LINC00393-201ENST00000443621 TARBP1Q13395 1621 aaKnown RBP4.48□□□□□ -1.69
LINC00393-201ENST00000443621 ABCA5Q8WWZ7 1642 aa4.48□□□□□ -1.69
LINC00393-201ENST00000443621 IFT140Q96RY7 1462 aa4.48□□□□□ -1.69
LINC00393-201ENST00000443621 RAPGEF2Q9Y4G8 1499 aa4.48□□□□□ -1.69
LINC00393-201ENST00000443621 RUSC2Q8N2Y8 1516 aa4.47□□□□□ -1.69
LINC00393-201ENST00000443621 LOC105371045A0A1W2PR82 267 aa4.47□□□□□ -1.69
LINC00393-201ENST00000443621 CUX2O14529 1486 aa4.47□□□□□ -1.69
LINC00393-201ENST00000443621 CEP162Q5TB80 1403 aa4.46□□□□□ -1.69
LINC00393-201ENST00000443621 CARMIL1Q5VZK9 1371 aa4.46□□□□□ -1.7
LINC00393-201ENST00000443621 MAP3K1Q13233 1512 aa4.46□□□□□ -1.7
LINC00393-201ENST00000443621 GAPVD1Q14C86 1478 aa4.45□□□□□ -1.7
LINC00393-201ENST00000443621 EFCAB5A4FU69 1503 aa4.45□□□□□ -1.7
LINC00393-201ENST00000443621 THOC2Q8NI27 1593 aaKnown RBP4.44□□□□□ -1.7
LINC00393-201ENST00000443621 TRIM26Q12899 539 aaPredicted RBP4.44□□□□□ -1.7
LINC00393-201ENST00000443621 DNAJC5BQ9UF47 199 aa4.44□□□□□ -1.7
LINC00393-201ENST00000443621 CLIP1P30622 1438 aa4.44□□□□□ -1.7
LINC00393-201ENST00000443621 GRIN2BQ13224 1484 aa4.43□□□□□ -1.7
LINC00393-201ENST00000443621 CTTNBP2Q8WZ74 1663 aa4.43□□□□□ -1.7
LINC00393-201ENST00000443621 UBTFP17480 764 aaKnown RBP4.43□□□□□ -1.7
LINC00393-201ENST00000443621 FAM9AQ8IZU1 332 aaPredicted RBP4.43□□□□□ -1.7
LINC00393-201ENST00000443621 FHAD1B1AJZ9 1412 aa4.43□□□□□ -1.7
LINC00393-201ENST00000443621 VPS8Q8N3P4 1428 aa4.43□□□□□ -1.7
LINC00393-201ENST00000443621 AQRO60306 1485 aaKnown RBP eCLIP4.43□□□□□ -1.7
LINC00393-201ENST00000443621 MAGI1Q96QZ7 1491 aaPredicted RBP4.43□□□□□ -1.7
LINC00393-201ENST00000443621 PBRM1Q86U86 1689 aa4.42□□□□□ -1.7
LINC00393-201ENST00000443621 ERCC6Q03468 1493 aa4.42□□□□□ -1.7
LINC00393-201ENST00000443621 RAD54L2Q9Y4B4 1467 aa4.42□□□□□ -1.7
LINC00393-201ENST00000443621 ADAMTS12P58397 1594 aa4.4□□□□□ -1.71
LINC00393-201ENST00000443621 SAMD9Q5K651 1589 aa4.4□□□□□ -1.71
LINC00393-201ENST00000443621 FMN1Q68DA7 1419 aa4.39□□□□□ -1.71
LINC00393-201ENST00000443621 ARHGAP35Q9NRY4 1499 aa4.39□□□□□ -1.71
LINC00393-201ENST00000443621 KIAA0586Q9BVV6 1533 aa4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms