RNA–Protein interactions for RNA: ENST00000442842.5

TM9SF4-204, Transcript of transmembrane 9 superfamily member 4, humanhuman

TSL 4

Gene TM9SF4, Length 563 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF4-204ENST00000442842 NISCHQ9Y2I1 1504 aa32.14■■■□□ 2.74
TM9SF4-204ENST00000442842 CCDC180Q9P1Z9 1646 aa28.38■■■□□ 2.13
TM9SF4-204ENST00000442842 ABCC9O60706 1549 aa27.46■■□□□ 1.99
TM9SF4-204ENST00000442842 ZCCHC6Q5VYS8 1495 aaKnown RBP26.89■■□□□ 1.9
TM9SF4-204ENST00000442842 DCAF8L2P0C7V8 631 aa26.76■■□□□ 1.87
TM9SF4-204ENST00000442842 NACADO15069 1562 aa26.57■■□□□ 1.84
TM9SF4-204ENST00000442842 DCAF1Q9Y4B6 1507 aa26.56■■□□□ 1.84
TM9SF4-204ENST00000442842 RB1CC1Q8TDY2 1594 aa26.54■■□□□ 1.84
TM9SF4-204ENST00000442842 MYO15BQ96JP2 1530 aa26.49■■□□□ 1.83
TM9SF4-204ENST00000442842 SCRIBQ14160 1630 aa26.04■■□□□ 1.76
TM9SF4-204ENST00000442842 UNC13AQ9UPW8 1703 aa25.9■■□□□ 1.74
TM9SF4-204ENST00000442842 SHROOM4Q9ULL8 1493 aa25.79■■□□□ 1.72
TM9SF4-204ENST00000442842 PABPN1Q86U42 306 aaKnown RBP eCLIP25.72■■□□□ 1.71
TM9SF4-204ENST00000442842 BICRAQ9NZM4 1560 aa25.69■■□□□ 1.7
TM9SF4-204ENST00000442842 EIF4G1Q04637 1599 aaKnown RBP25.02■■□□□ 1.6
TM9SF4-204ENST00000442842 CECR2Q9BXF3 1484 aa25.02■■□□□ 1.6
TM9SF4-204ENST00000442842 BAZ1AQ9NRL2 1556 aaPredicted RBP24.9■■□□□ 1.58
TM9SF4-204ENST00000442842 SMARCA4P51532 1647 aa24.87■■□□□ 1.57
TM9SF4-204ENST00000442842 MROH2BQ7Z745 1585 aa24.81■■□□□ 1.56
TM9SF4-204ENST00000442842 CC2D2AQ9P2K1 1620 aa24.81■■□□□ 1.56
TM9SF4-204ENST00000442842 DNAJC5BQ9UF47 199 aa24.72■■□□□ 1.55
TM9SF4-204ENST00000442842 RSF1Q96T23 1441 aaPredicted RBP24.65■■□□□ 1.54
TM9SF4-204ENST00000442842 ATAD2BQ9ULI0 1458 aa24.62■■□□□ 1.53
TM9SF4-204ENST00000442842 SMARCA2P51531 1590 aa24.6■■□□□ 1.53
TM9SF4-204ENST00000442842 WIZO95785 1651 aa24.57■■□□□ 1.52
TM9SF4-204ENST00000442842 PEG3Q9GZU2 1588 aa24.57■■□□□ 1.52
TM9SF4-204ENST00000442842 NCAPD3P42695 1498 aa24.49■■□□□ 1.51
TM9SF4-204ENST00000442842 BAZ1BQ9UIG0 1483 aaKnown RBP24.48■■□□□ 1.51
TM9SF4-204ENST00000442842 HMGXB3Q12766 1538 aa24.45■■□□□ 1.51
TM9SF4-204ENST00000442842 SUPT5HO00267 1087 aaKnown RBP24.41■■□□□ 1.5
TM9SF4-204ENST00000442842 TOP2AP11388 1531 aaKnown RBP24.34■■□□□ 1.49
TM9SF4-204ENST00000442842 CCDC88BA6NC98 1476 aa24.02■■□□□ 1.44
TM9SF4-204ENST00000442842 NESP48681 1621 aa23.87■■□□□ 1.41
TM9SF4-204ENST00000442842 CADPSQ9ULU8 1353 aa23.83■■□□□ 1.41
TM9SF4-204ENST00000442842 LAMC3Q9Y6N6 1575 aa23.82■■□□□ 1.4
TM9SF4-204ENST00000442842 CFTRP13569 1480 aa23.77■■□□□ 1.4
TM9SF4-204ENST00000442842 ERCC6Q03468 1493 aa23.65■■□□□ 1.38
TM9SF4-204ENST00000442842 PDS5BQ9NTI5 1447 aa23.65■■□□□ 1.38
TM9SF4-204ENST00000442842 PRDM2Q13029 1718 aa23.62■■□□□ 1.37
TM9SF4-204ENST00000442842 FANCD2Q9BXW9 1451 aa23.61■■□□□ 1.37
TM9SF4-204ENST00000442842 KIF21AQ7Z4S6 1674 aa23.59■■□□□ 1.37
TM9SF4-204ENST00000442842 CEP164Q9UPV0 1460 aa23.56■■□□□ 1.36
TM9SF4-204ENST00000442842 MRC2Q9UBG0 1479 aa23.42■■□□□ 1.34
TM9SF4-204ENST00000442842 THOC2Q8NI27 1593 aaKnown RBP23.4■■□□□ 1.34
TM9SF4-204ENST00000442842 ABCC8Q09428 1581 aa23.34■■□□□ 1.33
TM9SF4-204ENST00000442842 URB2Q14146 1524 aaKnown RBP23.33■■□□□ 1.33
TM9SF4-204ENST00000442842 WDR62O43379 1518 aa23.31■■□□□ 1.32
TM9SF4-204ENST00000442842 DNMBPQ6XZF7 1577 aa23.28■■□□□ 1.32
TM9SF4-204ENST00000442842 WRNQ14191 1432 aaPredicted RBP eCLIP23.26■■□□□ 1.31
TM9SF4-204ENST00000442842 TOPBP1Q92547 1522 aa23.26■■□□□ 1.31
TM9SF4-204ENST00000442842 CUX1P39880 1505 aa23.25■■□□□ 1.31
TM9SF4-204ENST00000442842 SYNJ1O43426 1573 aa23.21■■□□□ 1.31
TM9SF4-204ENST00000442842 CUX2O14529 1486 aa23.17■■□□□ 1.3
TM9SF4-204ENST00000442842 TOP2BQ02880 1626 aa23.15■■□□□ 1.3
TM9SF4-204ENST00000442842 BIVM-ERCC5R4GMW8 1640 aa23.14■■□□□ 1.29
TM9SF4-204ENST00000442842 FGD5Q6ZNL6 1462 aa23.12■■□□□ 1.29
TM9SF4-204ENST00000442842 POLA1P09884 1462 aaPredicted RBP23.11■■□□□ 1.29
TM9SF4-204ENST00000442842 IFT140Q96RY7 1462 aa23.01■■□□□ 1.27
TM9SF4-204ENST00000442842 RAD54L2Q9Y4B4 1467 aa23.01■■□□□ 1.27
TM9SF4-204ENST00000442842 TRIM41Q8WV44 630 aa23■■□□□ 1.27
TM9SF4-204ENST00000442842 SOGA1O94964 1423 aa22.99■■□□□ 1.27
TM9SF4-204ENST00000442842 CHIC1Q5VXU3 224 aa22.96■■□□□ 1.27
TM9SF4-204ENST00000442842 TARBP1Q13395 1621 aaKnown RBP22.96■■□□□ 1.27
TM9SF4-204ENST00000442842 ZNF608Q9ULD9 1512 aaPredicted RBP22.9■■□□□ 1.26
TM9SF4-204ENST00000442842 WDR97A6NE52 1622 aa22.89■■□□□ 1.25
TM9SF4-204ENST00000442842 ABCA10Q8WWZ4 1543 aa22.87■■□□□ 1.25
TM9SF4-204ENST00000442842 EIF4G3O43432 1585 aaKnown RBP22.85■■□□□ 1.25
TM9SF4-204ENST00000442842 TDRD9Q8NDG6 1382 aaKnown RBP22.84■■□□□ 1.25
TM9SF4-204ENST00000442842 AQRO60306 1485 aaKnown RBP eCLIP22.81■■□□□ 1.241e-7■■■■□ 22
TM9SF4-204ENST00000442842 ABCA5Q8WWZ7 1642 aa22.78■■□□□ 1.24
TM9SF4-204ENST00000442842 GAPVD1Q14C86 1478 aa22.74■■□□□ 1.23
TM9SF4-204ENST00000442842 KIF27Q86VH2 1401 aa22.74■■□□□ 1.23
TM9SF4-204ENST00000442842 PBRM1Q86U86 1689 aa22.7■■□□□ 1.22
TM9SF4-204ENST00000442842 GRIN2BQ13224 1484 aa22.69■■□□□ 1.22
TM9SF4-204ENST00000442842 RUSC2Q8N2Y8 1516 aa22.67■■□□□ 1.22
TM9SF4-204ENST00000442842 SNAPC4Q5SXM2 1469 aa22.66■■□□□ 1.22
TM9SF4-204ENST00000442842 ERICH3Q5RHP9 1530 aa22.61■■□□□ 1.21
TM9SF4-204ENST00000442842 FAM9AQ8IZU1 332 aaPredicted RBP22.59■■□□□ 1.21
TM9SF4-204ENST00000442842 MAGI1Q96QZ7 1491 aaPredicted RBP22.57■■□□□ 1.2
TM9SF4-204ENST00000442842 ADAMTS12P58397 1594 aa22.56■■□□□ 1.2
TM9SF4-204ENST00000442842 EEA1Q15075 1411 aa22.56■■□□□ 1.2
TM9SF4-204ENST00000442842 IGF1RP08069 1367 aa22.54■■□□□ 1.2
TM9SF4-204ENST00000442842 CUL7Q14999 1698 aa22.51■■□□□ 1.19
TM9SF4-204ENST00000442842 FBLN2P98095 1184 aa22.49■■□□□ 1.19
TM9SF4-204ENST00000442842 FHAD1B1AJZ9 1412 aa22.48■■□□□ 1.19
TM9SF4-204ENST00000442842 SYNJ2O15056 1496 aa22.48■■□□□ 1.19
TM9SF4-204ENST00000442842 CHMP7Q8WUX9 453 aaPredicted RBP22.45■■□□□ 1.18
TM9SF4-204ENST00000442842 CSRNP3Q8WYN3 585 aa22.45■■□□□ 1.18
TM9SF4-204ENST00000442842 CARMIL1Q5VZK9 1371 aa22.45■■□□□ 1.18
TM9SF4-204ENST00000442842 CHD1O14646 1710 aa22.45■■□□□ 1.18
TM9SF4-204ENST00000442842 GRIN2AQ12879 1464 aa22.41■■□□□ 1.18
TM9SF4-204ENST00000442842 PRXQ9BXM0 1461 aa22.38■■□□□ 1.17
TM9SF4-204ENST00000442842 RAPGEF2Q9Y4G8 1499 aa22.38■■□□□ 1.17
TM9SF4-204ENST00000442842 EHMT2Q96KQ7 1210 aa22.33■■□□□ 1.17
TM9SF4-204ENST00000442842 KIF21BO75037 1637 aa22.31■■□□□ 1.16
TM9SF4-204ENST00000442842 CEP170Q5SW79 1584 aa22.29■■□□□ 1.16
TM9SF4-204ENST00000442842 NUP160Q12769 1436 aa22.26■■□□□ 1.15
TM9SF4-204ENST00000442842 GOLGA3Q08378 1498 aa22.25■■□□□ 1.15
TM9SF4-204ENST00000442842 OSCARQ8IYS5 282 aa22.24■■□□□ 1.15
TM9SF4-204ENST00000442842 CLASP1Q7Z460 1538 aa22.21■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms