RNA–Protein interactions for RNA: ENST00000440978.1

EBF3-203, Transcript of early B cell factor 3, humanhuman

TSL 3

Gene EBF3, Length 817 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EBF3-203ENST00000440978 NISCHQ9Y2I1 1504 aa28.61■■■□□ 2.17
EBF3-203ENST00000440978 CCDC180Q9P1Z9 1646 aa25.38■■□□□ 1.65
EBF3-203ENST00000440978 AEBP2Q6ZN18 517 aaPredicted RBP25.31■■□□□ 1.64
EBF3-203ENST00000440978 ABCC9O60706 1549 aa24.53■■□□□ 1.52
EBF3-203ENST00000440978 ZCCHC6Q5VYS8 1495 aaKnown RBP23.88■■□□□ 1.41
EBF3-203ENST00000440978 NACADO15069 1562 aa23.8■■□□□ 1.4
EBF3-203ENST00000440978 MYO15BQ96JP2 1530 aa23.77■■□□□ 1.4
EBF3-203ENST00000440978 RB1CC1Q8TDY2 1594 aa23.77■■□□□ 1.4
EBF3-203ENST00000440978 DCAF1Q9Y4B6 1507 aa23.74■■□□□ 1.39
EBF3-203ENST00000440978 DCAF8L2P0C7V8 631 aa23.73■■□□□ 1.39
EBF3-203ENST00000440978 CHIC1Q5VXU3 224 aa23.45■■□□□ 1.34
EBF3-203ENST00000440978 UNC13AQ9UPW8 1703 aa23.19■■□□□ 1.3
EBF3-203ENST00000440978 SCRIBQ14160 1630 aa23.1■■□□□ 1.29
EBF3-203ENST00000440978 BICRAQ9NZM4 1560 aa23.01■■□□□ 1.27
EBF3-203ENST00000440978 PABPN1Q86U42 306 aaKnown RBP eCLIP22.93■■□□□ 1.26
EBF3-203ENST00000440978 SHROOM4Q9ULL8 1493 aa22.89■■□□□ 1.25
EBF3-203ENST00000440978 EIF4G1Q04637 1599 aaKnown RBP22.4■■□□□ 1.18
EBF3-203ENST00000440978 DNAJC5BQ9UF47 199 aa22.28■■□□□ 1.16
EBF3-203ENST00000440978 CC2D2AQ9P2K1 1620 aa22.23■■□□□ 1.15
EBF3-203ENST00000440978 CECR2Q9BXF3 1484 aa22.22■■□□□ 1.15
EBF3-203ENST00000440978 BAZ1AQ9NRL2 1556 aaPredicted RBP22.18■■□□□ 1.14
EBF3-203ENST00000440978 SMARCA4P51532 1647 aa22.15■■□□□ 1.14
EBF3-203ENST00000440978 MROH2BQ7Z745 1585 aa22.02■■□□□ 1.12
EBF3-203ENST00000440978 SMARCA2P51531 1590 aa21.99■■□□□ 1.11
EBF3-203ENST00000440978 PEG3Q9GZU2 1588 aa21.97■■□□□ 1.11
EBF3-203ENST00000440978 ATAD2BQ9ULI0 1458 aa21.96■■□□□ 1.11
EBF3-203ENST00000440978 NCAPD3P42695 1498 aa21.95■■□□□ 1.1
EBF3-203ENST00000440978 HMGXB3Q12766 1538 aa21.88■■□□□ 1.09
EBF3-203ENST00000440978 RSF1Q96T23 1441 aaPredicted RBP21.86■■□□□ 1.09
EBF3-203ENST00000440978 BAZ1BQ9UIG0 1483 aaKnown RBP21.81■■□□□ 1.08
EBF3-203ENST00000440978 WIZO95785 1651 aa21.79■■□□□ 1.08
EBF3-203ENST00000440978 TOP2AP11388 1531 aaKnown RBP21.62■■□□□ 1.05
EBF3-203ENST00000440978 SENP3Q9H4L4 574 aaPredicted RBP21.43■■□□□ 1.02
EBF3-203ENST00000440978 SUPT5HO00267 1087 aaKnown RBP21.41■■□□□ 1.02
EBF3-203ENST00000440978 LAMC3Q9Y6N6 1575 aa21.35■■□□□ 1.01
EBF3-203ENST00000440978 CCDC88BA6NC98 1476 aa21.33■■□□□ 1.01
EBF3-203ENST00000440978 CADPSQ9ULU8 1353 aa21.31■■□□□ 1
EBF3-203ENST00000440978 NESP48681 1621 aa21.29■■□□□ 1
EBF3-203ENST00000440978 CFTRP13569 1480 aa21.23■□□□□ 0.99
EBF3-203ENST00000440978 PHF23Q9BUL5 403 aaPredicted RBP21.19■□□□□ 0.98
EBF3-203ENST00000440978 PDS5BQ9NTI5 1447 aa21.19■□□□□ 0.98
EBF3-203ENST00000440978 ERCC6Q03468 1493 aa21.16■□□□□ 0.98
EBF3-203ENST00000440978 PRDM2Q13029 1718 aa21.11■□□□□ 0.97
EBF3-203ENST00000440978 KIF21AQ7Z4S6 1674 aa21.07■□□□□ 0.96
EBF3-203ENST00000440978 FANCD2Q9BXW9 1451 aa21.05■□□□□ 0.96
EBF3-203ENST00000440978 CEP164Q9UPV0 1460 aa21.02■□□□□ 0.96
EBF3-203ENST00000440978 THOC2Q8NI27 1593 aaKnown RBP20.97■□□□□ 0.95
EBF3-203ENST00000440978 MRC2Q9UBG0 1479 aa20.94■□□□□ 0.94
EBF3-203ENST00000440978 CUX2O14529 1486 aa20.9■□□□□ 0.94
EBF3-203ENST00000440978 WDR62O43379 1518 aa20.88■□□□□ 0.93
EBF3-203ENST00000440978 URB2Q14146 1524 aaKnown RBP20.82■□□□□ 0.92
EBF3-203ENST00000440978 ABCC8Q09428 1581 aa20.8■□□□□ 0.92
EBF3-203ENST00000440978 DNMBPQ6XZF7 1577 aa20.76■□□□□ 0.91
EBF3-203ENST00000440978 TOPBP1Q92547 1522 aa20.73■□□□□ 0.91
EBF3-203ENST00000440978 CUX1P39880 1505 aa20.65■□□□□ 0.9
EBF3-203ENST00000440978 WRNQ14191 1432 aaPredicted RBP eCLIP20.62■□□□□ 0.89
EBF3-203ENST00000440978 POLA1P09884 1462 aaPredicted RBP20.58■□□□□ 0.89
EBF3-203ENST00000440978 IFT140Q96RY7 1462 aa20.58■□□□□ 0.89
EBF3-203ENST00000440978 TOP2BQ02880 1626 aa20.57■□□□□ 0.88
EBF3-203ENST00000440978 BIVM-ERCC5R4GMW8 1640 aa20.56■□□□□ 0.88
EBF3-203ENST00000440978 FGD5Q6ZNL6 1462 aa20.56■□□□□ 0.88
EBF3-203ENST00000440978 SYNJ1O43426 1573 aa20.54■□□□□ 0.88
EBF3-203ENST00000440978 TARBP1Q13395 1621 aaKnown RBP20.5■□□□□ 0.87
EBF3-203ENST00000440978 SOGA1O94964 1423 aa20.5■□□□□ 0.87
EBF3-203ENST00000440978 RAD54L2Q9Y4B4 1467 aa20.45■□□□□ 0.86
EBF3-203ENST00000440978 WDR97A6NE52 1622 aa20.43■□□□□ 0.86
EBF3-203ENST00000440978 ZNF608Q9ULD9 1512 aaPredicted RBP20.41■□□□□ 0.86
EBF3-203ENST00000440978 ABCA10Q8WWZ4 1543 aa20.39■□□□□ 0.85
EBF3-203ENST00000440978 EIF4G3O43432 1585 aaKnown RBP20.38■□□□□ 0.85
EBF3-203ENST00000440978 AQRO60306 1485 aaKnown RBP eCLIP20.33■□□□□ 0.85
EBF3-203ENST00000440978 TDRD9Q8NDG6 1382 aaKnown RBP20.33■□□□□ 0.84
EBF3-203ENST00000440978 ABCA5Q8WWZ7 1642 aa20.29■□□□□ 0.84
EBF3-203ENST00000440978 GAPVD1Q14C86 1478 aa20.27■□□□□ 0.84
EBF3-203ENST00000440978 TRIM41Q8WV44 630 aa20.26■□□□□ 0.83
EBF3-203ENST00000440978 GRIN2BQ13224 1484 aa20.25■□□□□ 0.83
EBF3-203ENST00000440978 PBRM1Q86U86 1689 aa20.22■□□□□ 0.83
EBF3-203ENST00000440978 MAGI1Q96QZ7 1491 aaPredicted RBP20.19■□□□□ 0.82
EBF3-203ENST00000440978 FOXD1Q16676 465 aa20.19■□□□□ 0.82
EBF3-203ENST00000440978 KIF27Q86VH2 1401 aa20.19■□□□□ 0.82
EBF3-203ENST00000440978 SNAPC4Q5SXM2 1469 aa20.17■□□□□ 0.82
EBF3-203ENST00000440978 ERICH3Q5RHP9 1530 aa20.17■□□□□ 0.82
EBF3-203ENST00000440978 SYNJ2O15056 1496 aa20.11■□□□□ 0.81
EBF3-203ENST00000440978 ADAMTS12P58397 1594 aa20.08■□□□□ 0.8
EBF3-203ENST00000440978 CHD1O14646 1710 aa20.07■□□□□ 0.8
EBF3-203ENST00000440978 FHAD1B1AJZ9 1412 aa20.06■□□□□ 0.8
EBF3-203ENST00000440978 CHMP7Q8WUX9 453 aaPredicted RBP20.05■□□□□ 0.8
EBF3-203ENST00000440978 IGF1RP08069 1367 aa20.05■□□□□ 0.8
EBF3-203ENST00000440978 OSCARQ8IYS5 282 aa20.04■□□□□ 0.8
EBF3-203ENST00000440978 CUL7Q14999 1698 aa20.03■□□□□ 0.8
EBF3-203ENST00000440978 FBLN2P98095 1184 aa20.03■□□□□ 0.8
EBF3-203ENST00000440978 RUSC2Q8N2Y8 1516 aa20■□□□□ 0.79
EBF3-203ENST00000440978 GRIN2AQ12879 1464 aa19.99■□□□□ 0.79
EBF3-203ENST00000440978 EEA1Q15075 1411 aa19.98■□□□□ 0.79
EBF3-203ENST00000440978 DNAJC5Q9H3Z4 198 aa19.95■□□□□ 0.78
EBF3-203ENST00000440978 CARMIL1Q5VZK9 1371 aa19.94■□□□□ 0.78
EBF3-203ENST00000440978 NUP160Q12769 1436 aa19.89■□□□□ 0.77
EBF3-203ENST00000440978 CLASP1Q7Z460 1538 aa19.87■□□□□ 0.77
EBF3-203ENST00000440978 RAPGEF2Q9Y4G8 1499 aa19.86■□□□□ 0.77
EBF3-203ENST00000440978 CSRNP3Q8WYN3 585 aa19.86■□□□□ 0.77
EBF3-203ENST00000440978 CEP170Q5SW79 1584 aa19.86■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms