RNA–Protein interactions for RNA: ENST00000440431.6

SCN3A-204, Transcript of sodium voltage-gated channel alpha subunit 3, humanhuman

TSL 5

Gene SCN3A, Length 4,146 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3A-204ENST00000440431 NISCHQ9Y2I1 1504 aa9.92□□□□□ -0.82
SCN3A-204ENST00000440431 CCDC180Q9P1Z9 1646 aa8.64□□□□□ -1.03
SCN3A-204ENST00000440431 ZCCHC6Q5VYS8 1495 aaKnown RBP8.36□□□□□ -1.07
SCN3A-204ENST00000440431 DCAF1Q9Y4B6 1507 aa8.22□□□□□ -1.09
SCN3A-204ENST00000440431 MYO15BQ96JP2 1530 aa8.11□□□□□ -1.11
SCN3A-204ENST00000440431 DCAF8L2P0C7V8 631 aa8.06□□□□□ -1.12
SCN3A-204ENST00000440431 ABCC9O60706 1549 aa8.03□□□□□ -1.12
SCN3A-204ENST00000440431 NACADO15069 1562 aa7.98□□□□□ -1.13
SCN3A-204ENST00000440431 SHROOM4Q9ULL8 1493 aa7.96□□□□□ -1.14
SCN3A-204ENST00000440431 UNC13AQ9UPW8 1703 aa7.95□□□□□ -1.14
SCN3A-204ENST00000440431 SCRIBQ14160 1630 aa7.9□□□□□ -1.14
SCN3A-204ENST00000440431 RB1CC1Q8TDY2 1594 aa7.86□□□□□ -1.15
SCN3A-204ENST00000440431 BICRAQ9NZM4 1560 aa7.83□□□□□ -1.16
SCN3A-204ENST00000440431 CECR2Q9BXF3 1484 aa7.73□□□□□ -1.17
SCN3A-204ENST00000440431 RSF1Q96T23 1441 aaPredicted RBP7.7□□□□□ -1.18
SCN3A-204ENST00000440431 MROH2BQ7Z745 1585 aa7.69□□□□□ -1.18
SCN3A-204ENST00000440431 WIZO95785 1651 aa7.65□□□□□ -1.19
SCN3A-204ENST00000440431 SMARCA4P51532 1647 aa7.62□□□□□ -1.19
SCN3A-204ENST00000440431 PEG3Q9GZU2 1588 aa7.59□□□□□ -1.19
SCN3A-204ENST00000440431 SUPT5HO00267 1087 aaKnown RBP7.59□□□□□ -1.19
SCN3A-204ENST00000440431 BAZ1AQ9NRL2 1556 aaPredicted RBP7.59□□□□□ -1.19
SCN3A-204ENST00000440431 EIF4G1Q04637 1599 aaKnown RBP7.57□□□□□ -1.2
SCN3A-204ENST00000440431 PABPN1Q86U42 306 aaKnown RBP eCLIP7.55□□□□□ -1.2
SCN3A-204ENST00000440431 TOP2AP11388 1531 aaKnown RBP7.5□□□□□ -1.21
SCN3A-204ENST00000440431 SMARCA2P51531 1590 aa7.49□□□□□ -1.21
SCN3A-204ENST00000440431 ATAD2BQ9ULI0 1458 aa7.46□□□□□ -1.21
SCN3A-204ENST00000440431 CCDC88BA6NC98 1476 aa7.44□□□□□ -1.22
SCN3A-204ENST00000440431 CHIC1Q5VXU3 224 aa7.42□□□□□ -1.22
SCN3A-204ENST00000440431 NCAPD3P42695 1498 aa7.39□□□□□ -1.23
SCN3A-204ENST00000440431 HMGXB3Q12766 1538 aa7.39□□□□□ -1.23
SCN3A-204ENST00000440431 FAM9AQ8IZU1 332 aaPredicted RBP7.37□□□□□ -1.23
SCN3A-204ENST00000440431 CC2D2AQ9P2K1 1620 aa7.36□□□□□ -1.23
SCN3A-204ENST00000440431 BAZ1BQ9UIG0 1483 aaKnown RBP7.33□□□□□ -1.24
SCN3A-204ENST00000440431 ABCC8Q09428 1581 aa7.3□□□□□ -1.24
SCN3A-204ENST00000440431 PRDM2Q13029 1718 aa7.28□□□□□ -1.24
SCN3A-204ENST00000440431 AEBP2Q6ZN18 517 aaPredicted RBP7.28□□□□□ -1.24
SCN3A-204ENST00000440431 DNAJC5BQ9UF47 199 aa7.26□□□□□ -1.25
SCN3A-204ENST00000440431 SYNJ1O43426 1573 aa7.26□□□□□ -1.25
SCN3A-204ENST00000440431 CFTRP13569 1480 aa7.24□□□□□ -1.25
SCN3A-204ENST00000440431 BIVM-ERCC5R4GMW8 1640 aa7.22□□□□□ -1.25
SCN3A-204ENST00000440431 APLP2Q06481 763 aa7.2□□□□□ -1.26
SCN3A-204ENST00000440431 TOP2BQ02880 1626 aa7.19□□□□□ -1.26
SCN3A-204ENST00000440431 RUSC2Q8N2Y8 1516 aa7.19□□□□□ -1.26
SCN3A-204ENST00000440431 CUX1P39880 1505 aa7.18□□□□□ -1.26
SCN3A-204ENST00000440431 NESP48681 1621 aa7.16□□□□□ -1.26
SCN3A-204ENST00000440431 SOGA1O94964 1423 aa7.15□□□□□ -1.26
SCN3A-204ENST00000440431 WRNQ14191 1432 aaPredicted RBP eCLIP7.15□□□□□ -1.27
SCN3A-204ENST00000440431 CADPSQ9ULU8 1353 aa7.14□□□□□ -1.27
SCN3A-204ENST00000440431 LOC105371045A0A1W2PR82 267 aa7.13□□□□□ -1.27
SCN3A-204ENST00000440431 TRIM41Q8WV44 630 aa7.12□□□□□ -1.27
SCN3A-204ENST00000440431 KIF21AQ7Z4S6 1674 aa7.11□□□□□ -1.27
SCN3A-204ENST00000440431 LAMC3Q9Y6N6 1575 aa7.11□□□□□ -1.27
SCN3A-204ENST00000440431 WDR97A6NE52 1622 aa7.09□□□□□ -1.27
SCN3A-204ENST00000440431 URB2Q14146 1524 aaKnown RBP7.07□□□□□ -1.28
SCN3A-204ENST00000440431 FANCD2Q9BXW9 1451 aa7.07□□□□□ -1.28
SCN3A-204ENST00000440431 KIF21BO75037 1637 aa7.05□□□□□ -1.28
SCN3A-204ENST00000440431 DNMBPQ6XZF7 1577 aa7.05□□□□□ -1.28
SCN3A-204ENST00000440431 TOPBP1Q92547 1522 aa7.04□□□□□ -1.28
SCN3A-204ENST00000440431 TARBP1Q13395 1621 aaKnown RBP7.03□□□□□ -1.28
SCN3A-204ENST00000440431 FGD5Q6ZNL6 1462 aa7.02□□□□□ -1.28
SCN3A-204ENST00000440431 PRXQ9BXM0 1461 aa7.02□□□□□ -1.28
SCN3A-204ENST00000440431 POLA1P09884 1462 aaPredicted RBP7.01□□□□□ -1.29
SCN3A-204ENST00000440431 EEA1Q15075 1411 aa7.01□□□□□ -1.29
SCN3A-204ENST00000440431 ABCA5Q8WWZ7 1642 aa7□□□□□ -1.29
SCN3A-204ENST00000440431 THOC2Q8NI27 1593 aaKnown RBP7□□□□□ -1.29
SCN3A-204ENST00000440431 RAPGEF2Q9Y4G8 1499 aa7□□□□□ -1.29
SCN3A-204ENST00000440431 ABCA10Q8WWZ4 1543 aa6.99□□□□□ -1.29
SCN3A-204ENST00000440431 RAD54L2Q9Y4B4 1467 aa6.99□□□□□ -1.29
SCN3A-204ENST00000440431 CUX2O14529 1486 aa6.98□□□□□ -1.29
SCN3A-204ENST00000440431 CEP164Q9UPV0 1460 aa6.98□□□□□ -1.29
SCN3A-204ENST00000440431 WDR62O43379 1518 aa6.97□□□□□ -1.29
SCN3A-204ENST00000440431 ERICH3Q5RHP9 1530 aa6.97□□□□□ -1.29
SCN3A-204ENST00000440431 IGF1RP08069 1367 aa6.96□□□□□ -1.29
SCN3A-204ENST00000440431 CSRNP3Q8WYN3 585 aa6.96□□□□□ -1.3
SCN3A-204ENST00000440431 TNIKQ9UKE5 1360 aa6.95□□□□□ -1.3
SCN3A-204ENST00000440431 UBTFP17480 764 aaKnown RBP6.95□□□□□ -1.3
SCN3A-204ENST00000440431 GOLGA3Q08378 1498 aa6.94□□□□□ -1.3
SCN3A-204ENST00000440431 EHMT2Q96KQ7 1210 aa6.94□□□□□ -1.3
SCN3A-204ENST00000440431 PDS5BQ9NTI5 1447 aa6.94□□□□□ -1.3
SCN3A-204ENST00000440431 CEP162Q5TB80 1403 aa6.92□□□□□ -1.3
SCN3A-204ENST00000440431 MRC2Q9UBG0 1479 aa6.92□□□□□ -1.3
SCN3A-204ENST00000440431 PBRM1Q86U86 1689 aa6.92□□□□□ -1.3
SCN3A-204ENST00000440431 KIF27Q86VH2 1401 aa6.91□□□□□ -1.3
SCN3A-204ENST00000440431 ARAP1Q96P48 1450 aa6.89□□□□□ -1.31
SCN3A-204ENST00000440431 CUL7Q14999 1698 aa6.89□□□□□ -1.31
SCN3A-204ENST00000440431 ZNF608Q9ULD9 1512 aaPredicted RBP6.89□□□□□ -1.31
SCN3A-204ENST00000440431 ATP1B4Q9UN42 357 aaPredicted RBP6.88□□□□□ -1.31
SCN3A-204ENST00000440431 CTTNBP2Q8WZ74 1663 aa6.87□□□□□ -1.31
SCN3A-204ENST00000440431 ARHGAP35Q9NRY4 1499 aa6.86□□□□□ -1.31
SCN3A-204ENST00000440431 EIF4G3O43432 1585 aaKnown RBP6.86□□□□□ -1.31
SCN3A-204ENST00000440431 LRRIQ1Q96JM4 1722 aa6.86□□□□□ -1.31
SCN3A-204ENST00000440431 ADAMTS12P58397 1594 aa6.86□□□□□ -1.31
SCN3A-204ENST00000440431 GAPVD1Q14C86 1478 aa6.85□□□□□ -1.31
SCN3A-204ENST00000440431 TDRD9Q8NDG6 1382 aaKnown RBP6.84□□□□□ -1.31
SCN3A-204ENST00000440431 CARMIL1Q5VZK9 1371 aa6.84□□□□□ -1.31
SCN3A-204ENST00000440431 AQRO60306 1485 aaKnown RBP eCLIP6.84□□□□□ -1.31
SCN3A-204ENST00000440431 SAMD9Q5K651 1589 aa6.84□□□□□ -1.32
SCN3A-204ENST00000440431 CLIP1P30622 1438 aa6.83□□□□□ -1.32
SCN3A-204ENST00000440431 IFT140Q96RY7 1462 aa6.83□□□□□ -1.32
SCN3A-204ENST00000440431 ZEB1P37275 1124 aaPredicted RBP6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms