RNA–Protein interactions for RNA: ENST00000439717.2

HSPG2-206, Transcript of heparan sulfate proteoglycan 2, humanhuman

TSL 2

Gene HSPG2, Length 637 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2-206ENST00000439717 NISCHQ9Y2I1 1504 aa28.57■■■□□ 2.16
HSPG2-206ENST00000439717 CCDC180Q9P1Z9 1646 aa25.37■■□□□ 1.65
HSPG2-206ENST00000439717 ABCC9O60706 1549 aa24.72■■□□□ 1.55
HSPG2-206ENST00000439717 NACADO15069 1562 aa23.86■■□□□ 1.41
HSPG2-206ENST00000439717 RB1CC1Q8TDY2 1594 aa23.85■■□□□ 1.41
HSPG2-206ENST00000439717 DCAF8L2P0C7V8 631 aa23.81■■□□□ 1.4
HSPG2-206ENST00000439717 ZCCHC6Q5VYS8 1495 aaKnown RBP23.81■■□□□ 1.4
HSPG2-206ENST00000439717 MYO15BQ96JP2 1530 aa23.77■■□□□ 1.4
HSPG2-206ENST00000439717 DCAF1Q9Y4B6 1507 aa23.68■■□□□ 1.38
HSPG2-206ENST00000439717 UNC13AQ9UPW8 1703 aa23.25■■□□□ 1.31
HSPG2-206ENST00000439717 SCRIBQ14160 1630 aa23.11■■□□□ 1.29
HSPG2-206ENST00000439717 PABPN1Q86U42 306 aaKnown RBP eCLIP23.11■■□□□ 1.29
HSPG2-206ENST00000439717 BICRAQ9NZM4 1560 aa23.1■■□□□ 1.29
HSPG2-206ENST00000439717 SHROOM4Q9ULL8 1493 aa22.94■■□□□ 1.26
HSPG2-206ENST00000439717 DNAJC5BQ9UF47 199 aa22.62■■□□□ 1.21
HSPG2-206ENST00000439717 EIF4G1Q04637 1599 aaKnown RBP22.5■■□□□ 1.19
HSPG2-206ENST00000439717 CC2D2AQ9P2K1 1620 aa22.38■■□□□ 1.17
HSPG2-206ENST00000439717 CECR2Q9BXF3 1484 aa22.22■■□□□ 1.15
HSPG2-206ENST00000439717 BAZ1AQ9NRL2 1556 aaPredicted RBP22.15■■□□□ 1.14
HSPG2-206ENST00000439717 SMARCA4P51532 1647 aa22.14■■□□□ 1.14
HSPG2-206ENST00000439717 NCAPD3P42695 1498 aa22.02■■□□□ 1.12
HSPG2-206ENST00000439717 ATAD2BQ9ULI0 1458 aa22.02■■□□□ 1.12
HSPG2-206ENST00000439717 SMARCA2P51531 1590 aa22■■□□□ 1.11
HSPG2-206ENST00000439717 MROH2BQ7Z745 1585 aa21.99■■□□□ 1.11
HSPG2-206ENST00000439717 PEG3Q9GZU2 1588 aa21.95■■□□□ 1.11
HSPG2-206ENST00000439717 HMGXB3Q12766 1538 aa21.9■■□□□ 1.1
HSPG2-206ENST00000439717 BAZ1BQ9UIG0 1483 aaKnown RBP21.83■■□□□ 1.09
HSPG2-206ENST00000439717 RSF1Q96T23 1441 aaPredicted RBP21.79■■□□□ 1.08
HSPG2-206ENST00000439717 WIZO95785 1651 aa21.75■■□□□ 1.07
HSPG2-206ENST00000439717 TOP2AP11388 1531 aaKnown RBP21.55■■□□□ 1.04
HSPG2-206ENST00000439717 LAMC3Q9Y6N6 1575 aa21.41■■□□□ 1.02
HSPG2-206ENST00000439717 NESP48681 1621 aa21.4■■□□□ 1.02
HSPG2-206ENST00000439717 CADPSQ9ULU8 1353 aa21.37■■□□□ 1.01
HSPG2-206ENST00000439717 ERCC6Q03468 1493 aa21.32■■□□□ 1
HSPG2-206ENST00000439717 CCDC88BA6NC98 1476 aa21.29■■□□□ 1
HSPG2-206ENST00000439717 PDS5BQ9NTI5 1447 aa21.29■■□□□ 1
HSPG2-206ENST00000439717 CFTRP13569 1480 aa21.26■□□□□ 0.99
HSPG2-206ENST00000439717 SUPT5HO00267 1087 aaKnown RBP21.25■□□□□ 0.99
HSPG2-206ENST00000439717 KIF21AQ7Z4S6 1674 aa21.15■□□□□ 0.98
HSPG2-206ENST00000439717 CUX2O14529 1486 aa21.11■□□□□ 0.97
HSPG2-206ENST00000439717 FANCD2Q9BXW9 1451 aa21.1■□□□□ 0.97
HSPG2-206ENST00000439717 THOC2Q8NI27 1593 aaKnown RBP21.08■□□□□ 0.97
HSPG2-206ENST00000439717 CEP164Q9UPV0 1460 aa21.07■□□□□ 0.96
HSPG2-206ENST00000439717 PRDM2Q13029 1718 aa21.07■□□□□ 0.96
HSPG2-206ENST00000439717 MRC2Q9UBG0 1479 aa21.04■□□□□ 0.96
HSPG2-206ENST00000439717 WDR62O43379 1518 aa20.97■□□□□ 0.95
HSPG2-206ENST00000439717 URB2Q14146 1524 aaKnown RBP20.88■□□□□ 0.93
HSPG2-206ENST00000439717 ABCC8Q09428 1581 aa20.82■□□□□ 0.92
HSPG2-206ENST00000439717 TOPBP1Q92547 1522 aa20.77■□□□□ 0.92
HSPG2-206ENST00000439717 DNMBPQ6XZF7 1577 aa20.76■□□□□ 0.91
HSPG2-206ENST00000439717 IFT140Q96RY7 1462 aa20.65■□□□□ 0.9
HSPG2-206ENST00000439717 CUX1P39880 1505 aa20.63■□□□□ 0.89
HSPG2-206ENST00000439717 POLA1P09884 1462 aaPredicted RBP20.6■□□□□ 0.89
HSPG2-206ENST00000439717 FGD5Q6ZNL6 1462 aa20.56■□□□□ 0.88
HSPG2-206ENST00000439717 WRNQ14191 1432 aaPredicted RBP eCLIP20.54■□□□□ 0.88
HSPG2-206ENST00000439717 SOGA1O94964 1423 aa20.53■□□□□ 0.88
HSPG2-206ENST00000439717 TARBP1Q13395 1621 aaKnown RBP20.53■□□□□ 0.88
HSPG2-206ENST00000439717 ZNF608Q9ULD9 1512 aaPredicted RBP20.5■□□□□ 0.87
HSPG2-206ENST00000439717 RAD54L2Q9Y4B4 1467 aa20.49■□□□□ 0.87
HSPG2-206ENST00000439717 TOP2BQ02880 1626 aa20.49■□□□□ 0.87
HSPG2-206ENST00000439717 BIVM-ERCC5R4GMW8 1640 aa20.48■□□□□ 0.87
HSPG2-206ENST00000439717 SYNJ1O43426 1573 aa20.46■□□□□ 0.87
HSPG2-206ENST00000439717 EIF4G3O43432 1585 aaKnown RBP20.43■□□□□ 0.86
HSPG2-206ENST00000439717 WDR97A6NE52 1622 aa20.43■□□□□ 0.86
HSPG2-206ENST00000439717 AQRO60306 1485 aaKnown RBP eCLIP20.41■□□□□ 0.867e-7■■■□□ 18.8
HSPG2-206ENST00000439717 ABCA10Q8WWZ4 1543 aa20.38■□□□□ 0.85
HSPG2-206ENST00000439717 TDRD9Q8NDG6 1382 aaKnown RBP20.38■□□□□ 0.85
HSPG2-206ENST00000439717 DNAJC5Q9H3Z4 198 aa20.37■□□□□ 0.85
HSPG2-206ENST00000439717 GAPVD1Q14C86 1478 aa20.3■□□□□ 0.84
HSPG2-206ENST00000439717 GRIN2BQ13224 1484 aa20.29■□□□□ 0.84
HSPG2-206ENST00000439717 ABCA5Q8WWZ7 1642 aa20.27■□□□□ 0.84
HSPG2-206ENST00000439717 OSCARQ8IYS5 282 aa20.25■□□□□ 0.83
HSPG2-206ENST00000439717 MAGI1Q96QZ7 1491 aaPredicted RBP20.24■□□□□ 0.83
HSPG2-206ENST00000439717 SNAPC4Q5SXM2 1469 aa20.23■□□□□ 0.83
HSPG2-206ENST00000439717 PBRM1Q86U86 1689 aa20.21■□□□□ 0.83
HSPG2-206ENST00000439717 SYNJ2O15056 1496 aa20.15■□□□□ 0.82
HSPG2-206ENST00000439717 ERICH3Q5RHP9 1530 aa20.15■□□□□ 0.82
HSPG2-206ENST00000439717 CHD1O14646 1710 aa20.14■□□□□ 0.81
HSPG2-206ENST00000439717 FBLN2P98095 1184 aa20.14■□□□□ 0.81
HSPG2-206ENST00000439717 CHMP7Q8WUX9 453 aaPredicted RBP20.14■□□□□ 0.81
HSPG2-206ENST00000439717 KIF27Q86VH2 1401 aa20.12■□□□□ 0.81
HSPG2-206ENST00000439717 TRIM41Q8WV44 630 aa20.11■□□□□ 0.81
HSPG2-206ENST00000439717 ADAMTS12P58397 1594 aa20.08■□□□□ 0.8
HSPG2-206ENST00000439717 FHAD1B1AJZ9 1412 aa20.07■□□□□ 0.8
HSPG2-206ENST00000439717 IGF1RP08069 1367 aa20.03■□□□□ 0.8
HSPG2-206ENST00000439717 GRIN2AQ12879 1464 aa20.01■□□□□ 0.79
HSPG2-206ENST00000439717 CUL7Q14999 1698 aa19.97■□□□□ 0.79
HSPG2-206ENST00000439717 CLASP1Q7Z460 1538 aa19.97■□□□□ 0.79
HSPG2-206ENST00000439717 NUP160Q12769 1436 aa19.93■□□□□ 0.78
HSPG2-206ENST00000439717 CARMIL1Q5VZK9 1371 aa19.91■□□□□ 0.78
HSPG2-206ENST00000439717 RUSC2Q8N2Y8 1516 aa19.91■□□□□ 0.78
HSPG2-206ENST00000439717 CHIC1Q5VXU3 224 aa19.9■□□□□ 0.78
HSPG2-206ENST00000439717 CEP170Q5SW79 1584 aa19.9■□□□□ 0.78
HSPG2-206ENST00000439717 ARHGEF11O15085 1522 aa19.88■□□□□ 0.77
HSPG2-206ENST00000439717 RIMBP3CA6NJZ7 1639 aa19.87■□□□□ 0.77
HSPG2-206ENST00000439717 RIMBP3BA6NNM3 1639 aa19.87■□□□□ 0.77
HSPG2-206ENST00000439717 RIMBP3Q9UFD9 1639 aa19.87■□□□□ 0.77
HSPG2-206ENST00000439717 EEA1Q15075 1411 aa19.81■□□□□ 0.76
HSPG2-206ENST00000439717 RAPGEF2Q9Y4G8 1499 aa19.79■□□□□ 0.76
HSPG2-206ENST00000439717 KIAA0586Q9BVV6 1533 aa19.76■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 187.3 ms