RNA–Protein interactions for RNA: ENST00000437811.1

HLA-DPA1-243, Transcript of major histocompatibility complex, class II, DP alpha 1, humanhuman

Gene HLA-DPA1, Length 1,375 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPA1-243ENST00000437811 NISCHQ9Y2I1 1504 aa31.16■■■□□ 2.58
HLA-DPA1-243ENST00000437811 CCDC180Q9P1Z9 1646 aa27.31■■□□□ 1.96
HLA-DPA1-243ENST00000437811 AEBP2Q6ZN18 517 aaPredicted RBP26.94■■□□□ 1.9
HLA-DPA1-243ENST00000437811 CHIC1Q5VXU3 224 aa26.26■■□□□ 1.79
HLA-DPA1-243ENST00000437811 ZCCHC6Q5VYS8 1495 aaKnown RBP26.18■■□□□ 1.78
HLA-DPA1-243ENST00000437811 DCAF1Q9Y4B6 1507 aa25.82■■□□□ 1.72
HLA-DPA1-243ENST00000437811 ABCC9O60706 1549 aa25.81■■□□□ 1.72
HLA-DPA1-243ENST00000437811 DCAF8L2P0C7V8 631 aa25.61■■□□□ 1.69
HLA-DPA1-243ENST00000437811 MYO15BQ96JP2 1530 aa25.55■■□□□ 1.68
HLA-DPA1-243ENST00000437811 NACADO15069 1562 aa25.42■■□□□ 1.66
HLA-DPA1-243ENST00000437811 SHROOM4Q9ULL8 1493 aa25.23■■□□□ 1.63
HLA-DPA1-243ENST00000437811 RB1CC1Q8TDY2 1594 aa25.22■■□□□ 1.63
HLA-DPA1-243ENST00000437811 SCRIBQ14160 1630 aa25.02■■□□□ 1.6
HLA-DPA1-243ENST00000437811 UNC13AQ9UPW8 1703 aa24.71■■□□□ 1.55
HLA-DPA1-243ENST00000437811 BICRAQ9NZM4 1560 aa24.46■■□□□ 1.51
HLA-DPA1-243ENST00000437811 PABPN1Q86U42 306 aaKnown RBP eCLIP24.25■■□□□ 1.47
HLA-DPA1-243ENST00000437811 SUPT5HO00267 1087 aaKnown RBP24.19■■□□□ 1.46
HLA-DPA1-243ENST00000437811 CECR2Q9BXF3 1484 aa24.19■■□□□ 1.46
HLA-DPA1-243ENST00000437811 RSF1Q96T23 1441 aaPredicted RBP24.09■■□□□ 1.45
HLA-DPA1-243ENST00000437811 BAZ1AQ9NRL2 1556 aaPredicted RBP24.09■■□□□ 1.45
HLA-DPA1-243ENST00000437811 MROH2BQ7Z745 1585 aa24.05■■□□□ 1.44
HLA-DPA1-243ENST00000437811 SMARCA4P51532 1647 aa24■■□□□ 1.43
HLA-DPA1-243ENST00000437811 WIZO95785 1651 aa23.86■■□□□ 1.41
HLA-DPA1-243ENST00000437811 PEG3Q9GZU2 1588 aa23.73■■□□□ 1.39
HLA-DPA1-243ENST00000437811 EIF4G1Q04637 1599 aaKnown RBP23.72■■□□□ 1.39
HLA-DPA1-243ENST00000437811 TOP2AP11388 1531 aaKnown RBP23.65■■□□□ 1.38
HLA-DPA1-243ENST00000437811 SMARCA2P51531 1590 aa23.62■■□□□ 1.37
HLA-DPA1-243ENST00000437811 ATAD2BQ9ULI0 1458 aa23.61■■□□□ 1.37
HLA-DPA1-243ENST00000437811 BAZ1BQ9UIG0 1483 aaKnown RBP23.47■■□□□ 1.35
HLA-DPA1-243ENST00000437811 NCAPD3P42695 1498 aa23.43■■□□□ 1.34
HLA-DPA1-243ENST00000437811 HMGXB3Q12766 1538 aa23.43■■□□□ 1.34
HLA-DPA1-243ENST00000437811 CC2D2AQ9P2K1 1620 aa23.39■■□□□ 1.34
HLA-DPA1-243ENST00000437811 CCDC88BA6NC98 1476 aa23.35■■□□□ 1.33
HLA-DPA1-243ENST00000437811 PHF23Q9BUL5 403 aaPredicted RBP23.08■■□□□ 1.29
HLA-DPA1-243ENST00000437811 SENP3Q9H4L4 574 aaPredicted RBP22.9■■□□□ 1.26
HLA-DPA1-243ENST00000437811 CFTRP13569 1480 aa22.87■■□□□ 1.25
HLA-DPA1-243ENST00000437811 PRDM2Q13029 1718 aa22.83■■□□□ 1.25
HLA-DPA1-243ENST00000437811 ABCC8Q09428 1581 aa22.82■■□□□ 1.24
HLA-DPA1-243ENST00000437811 DNAJC5BQ9UF47 199 aa22.8■■□□□ 1.24
HLA-DPA1-243ENST00000437811 CADPSQ9ULU8 1353 aa22.79■■□□□ 1.24
HLA-DPA1-243ENST00000437811 TRIM41Q8WV44 630 aa22.78■■□□□ 1.24
HLA-DPA1-243ENST00000437811 WRNQ14191 1432 aaPredicted RBP eCLIP22.69■■□□□ 1.22
HLA-DPA1-243ENST00000437811 LAMC3Q9Y6N6 1575 aa22.68■■□□□ 1.22
HLA-DPA1-243ENST00000437811 SYNJ1O43426 1573 aa22.63■■□□□ 1.21
HLA-DPA1-243ENST00000437811 NESP48681 1621 aa22.62■■□□□ 1.21
HLA-DPA1-243ENST00000437811 BIVM-ERCC5R4GMW8 1640 aa22.57■■□□□ 1.2
HLA-DPA1-243ENST00000437811 TOP2BQ02880 1626 aa22.56■■□□□ 1.2
HLA-DPA1-243ENST00000437811 FANCD2Q9BXW9 1451 aa22.56■■□□□ 1.2
HLA-DPA1-243ENST00000437811 CUX1P39880 1505 aa22.51■■□□□ 1.19
HLA-DPA1-243ENST00000437811 PDS5BQ9NTI5 1447 aa22.46■■□□□ 1.19
HLA-DPA1-243ENST00000437811 CEP164Q9UPV0 1460 aa22.44■■□□□ 1.18
HLA-DPA1-243ENST00000437811 KIF21AQ7Z4S6 1674 aa22.4■■□□□ 1.18
HLA-DPA1-243ENST00000437811 DNMBPQ6XZF7 1577 aa22.38■■□□□ 1.17
HLA-DPA1-243ENST00000437811 SOGA1O94964 1423 aa22.34■■□□□ 1.17
HLA-DPA1-243ENST00000437811 EEA1Q15075 1411 aa22.34■■□□□ 1.17
HLA-DPA1-243ENST00000437811 FAM9AQ8IZU1 332 aaPredicted RBP22.33■■□□□ 1.17
HLA-DPA1-243ENST00000437811 TOPBP1Q92547 1522 aa22.31■■□□□ 1.16
HLA-DPA1-243ENST00000437811 URB2Q14146 1524 aaKnown RBP22.29■■□□□ 1.16
HLA-DPA1-243ENST00000437811 FGD5Q6ZNL6 1462 aa22.28■■□□□ 1.16
HLA-DPA1-243ENST00000437811 RUSC2Q8N2Y8 1516 aa22.27■■□□□ 1.15
HLA-DPA1-243ENST00000437811 MRC2Q9UBG0 1479 aa22.21■■□□□ 1.15
HLA-DPA1-243ENST00000437811 LOC105371045A0A1W2PR82 267 aa22.19■■□□□ 1.14
HLA-DPA1-243ENST00000437811 POLA1P09884 1462 aaPredicted RBP22.19■■□□□ 1.14
HLA-DPA1-243ENST00000437811 CSRNP3Q8WYN3 585 aa22.14■■□□□ 1.14
HLA-DPA1-243ENST00000437811 ERCC6Q03468 1493 aa22.14■■□□□ 1.13
HLA-DPA1-243ENST00000437811 KIF27Q86VH2 1401 aa22.13■■□□□ 1.13
HLA-DPA1-243ENST00000437811 WDR62O43379 1518 aa22.11■■□□□ 1.13
HLA-DPA1-243ENST00000437811 CUX2O14529 1486 aa22.1■■□□□ 1.13
HLA-DPA1-243ENST00000437811 ABCA10Q8WWZ4 1543 aa22.09■■□□□ 1.13
HLA-DPA1-243ENST00000437811 THOC2Q8NI27 1593 aaKnown RBP22.09■■□□□ 1.13
HLA-DPA1-243ENST00000437811 RAD54L2Q9Y4B4 1467 aa22.09■■□□□ 1.13
HLA-DPA1-243ENST00000437811 WDR97A6NE52 1622 aa22.09■■□□□ 1.13
HLA-DPA1-243ENST00000437811 KIF21BO75037 1637 aa22.08■■□□□ 1.13
HLA-DPA1-243ENST00000437811 GOLGA3Q08378 1498 aa22.01■■□□□ 1.11
HLA-DPA1-243ENST00000437811 TARBP1Q13395 1621 aaKnown RBP22.01■■□□□ 1.11
HLA-DPA1-243ENST00000437811 EHMT2Q96KQ7 1210 aa21.98■■□□□ 1.11
HLA-DPA1-243ENST00000437811 PRXQ9BXM0 1461 aa21.97■■□□□ 1.11
HLA-DPA1-243ENST00000437811 ABCA5Q8WWZ7 1642 aa21.95■■□□□ 1.1
HLA-DPA1-243ENST00000437811 ERICH3Q5RHP9 1530 aa21.95■■□□□ 1.1
HLA-DPA1-243ENST00000437811 IGF1RP08069 1367 aa21.92■■□□□ 1.1
HLA-DPA1-243ENST00000437811 IFT140Q96RY7 1462 aa21.91■■□□□ 1.1
HLA-DPA1-243ENST00000437811 RAPGEF2Q9Y4G8 1499 aa21.91■■□□□ 1.1
HLA-DPA1-243ENST00000437811 TNIKQ9UKE5 1360 aa21.9■■□□□ 1.1
HLA-DPA1-243ENST00000437811 GAPVD1Q14C86 1478 aa21.86■■□□□ 1.09
HLA-DPA1-243ENST00000437811 TDRD9Q8NDG6 1382 aaKnown RBP21.86■■□□□ 1.09
HLA-DPA1-243ENST00000437811 CUL7Q14999 1698 aa21.85■■□□□ 1.09
HLA-DPA1-243ENST00000437811 UBTFP17480 764 aaKnown RBP21.82■■□□□ 1.08
HLA-DPA1-243ENST00000437811 CARMIL1Q5VZK9 1371 aa21.81■■□□□ 1.08
HLA-DPA1-243ENST00000437811 PBRM1Q86U86 1689 aa21.8■■□□□ 1.08
HLA-DPA1-243ENST00000437811 CEP162Q5TB80 1403 aa21.77■■□□□ 1.08
HLA-DPA1-243ENST00000437811 ZNF608Q9ULD9 1512 aaPredicted RBP21.77■■□□□ 1.08
HLA-DPA1-243ENST00000437811 AQRO60306 1485 aaKnown RBP eCLIP21.75■■□□□ 1.07
HLA-DPA1-243ENST00000437811 EIF4G3O43432 1585 aaKnown RBP21.74■■□□□ 1.07
HLA-DPA1-243ENST00000437811 GRIN2BQ13224 1484 aa21.72■■□□□ 1.07
HLA-DPA1-243ENST00000437811 ADAMTS12P58397 1594 aa21.68■■□□□ 1.06
HLA-DPA1-243ENST00000437811 FHAD1B1AJZ9 1412 aa21.63■■□□□ 1.05
HLA-DPA1-243ENST00000437811 CLIP1P30622 1438 aa21.63■■□□□ 1.05
HLA-DPA1-243ENST00000437811 CTTNBP2Q8WZ74 1663 aa21.59■■□□□ 1.05
HLA-DPA1-243ENST00000437811 SNAPC4Q5SXM2 1469 aa21.59■■□□□ 1.05
HLA-DPA1-243ENST00000437811 MAGI1Q96QZ7 1491 aaPredicted RBP21.56■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms