RNA–Protein interactions for RNA: ENST00000437800.6

CD4-202, Transcript of CD4 molecule, humanhuman

TSL 2

Gene CD4, Length 2,117 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD4-202ENST00000437800 NISCHQ9Y2I1 1504 aa33.67■■■□□ 2.98
CD4-202ENST00000437800 CCDC180Q9P1Z9 1646 aa29.61■■■□□ 2.33
CD4-202ENST00000437800 ABCC9O60706 1549 aa28.36■■■□□ 2.13
CD4-202ENST00000437800 ZCCHC6Q5VYS8 1495 aaKnown RBP28.23■■■□□ 2.11
CD4-202ENST00000437800 DCAF8L2P0C7V8 631 aa27.88■■■□□ 2.05
CD4-202ENST00000437800 DCAF1Q9Y4B6 1507 aa27.81■■■□□ 2.04
CD4-202ENST00000437800 MYO15BQ96JP2 1530 aa27.62■■■□□ 2.01
CD4-202ENST00000437800 NACADO15069 1562 aa27.62■■■□□ 2.01
CD4-202ENST00000437800 RB1CC1Q8TDY2 1594 aa27.51■■□□□ 1.99
CD4-202ENST00000437800 SHROOM4Q9ULL8 1493 aa27.21■■□□□ 1.95
CD4-202ENST00000437800 SCRIBQ14160 1630 aa27.21■■□□□ 1.95
CD4-202ENST00000437800 UNC13AQ9UPW8 1703 aa27.04■■□□□ 1.92
CD4-202ENST00000437800 BICRAQ9NZM4 1560 aa26.72■■□□□ 1.87
CD4-202ENST00000437800 PABPN1Q86U42 306 aaKnown RBP eCLIP26.62■■□□□ 1.85
CD4-202ENST00000437800 CECR2Q9BXF3 1484 aa26.22■■□□□ 1.79
CD4-202ENST00000437800 BAZ1AQ9NRL2 1556 aaPredicted RBP26.04■■□□□ 1.76
CD4-202ENST00000437800 MROH2BQ7Z745 1585 aa26.02■■□□□ 1.76
CD4-202ENST00000437800 SMARCA4P51532 1647 aa26.02■■□□□ 1.76
CD4-202ENST00000437800 RSF1Q96T23 1441 aaPredicted RBP25.94■■□□□ 1.74
CD4-202ENST00000437800 EIF4G1Q04637 1599 aaKnown RBP25.94■■□□□ 1.74
CD4-202ENST00000437800 SUPT5HO00267 1087 aaKnown RBP25.9■■□□□ 1.74
CD4-202ENST00000437800 WIZO95785 1651 aa25.82■■□□□ 1.72
CD4-202ENST00000437800 PEG3Q9GZU2 1588 aa25.68■■□□□ 1.7
CD4-202ENST00000437800 CC2D2AQ9P2K1 1620 aa25.67■■□□□ 1.7
CD4-202ENST00000437800 ATAD2BQ9ULI0 1458 aa25.65■■□□□ 1.7
CD4-202ENST00000437800 SMARCA2P51531 1590 aa25.63■■□□□ 1.69
CD4-202ENST00000437800 TOP2AP11388 1531 aaKnown RBP25.52■■□□□ 1.68
CD4-202ENST00000437800 BAZ1BQ9UIG0 1483 aaKnown RBP25.5■■□□□ 1.67
CD4-202ENST00000437800 NCAPD3P42695 1498 aa25.46■■□□□ 1.67
CD4-202ENST00000437800 HMGXB3Q12766 1538 aa25.45■■□□□ 1.67
CD4-202ENST00000437800 DNAJC5BQ9UF47 199 aa25.34■■□□□ 1.65
CD4-202ENST00000437800 CCDC88BA6NC98 1476 aa25.22■■□□□ 1.63
CD4-202ENST00000437800 CFTRP13569 1480 aa24.8■■□□□ 1.56
CD4-202ENST00000437800 NESP48681 1621 aa24.78■■□□□ 1.56
CD4-202ENST00000437800 CADPSQ9ULU8 1353 aa24.77■■□□□ 1.56
CD4-202ENST00000437800 CHIC1Q5VXU3 224 aa24.77■■□□□ 1.56
CD4-202ENST00000437800 PRDM2Q13029 1718 aa24.76■■□□□ 1.55
CD4-202ENST00000437800 LAMC3Q9Y6N6 1575 aa24.71■■□□□ 1.55
CD4-202ENST00000437800 ABCC8Q09428 1581 aa24.62■■□□□ 1.53
CD4-202ENST00000437800 FANCD2Q9BXW9 1451 aa24.55■■□□□ 1.52
CD4-202ENST00000437800 KIF21AQ7Z4S6 1674 aa24.53■■□□□ 1.52
CD4-202ENST00000437800 PDS5BQ9NTI5 1447 aa24.48■■□□□ 1.51
CD4-202ENST00000437800 CEP164Q9UPV0 1460 aa24.45■■□□□ 1.5
CD4-202ENST00000437800 WRNQ14191 1432 aaPredicted RBP eCLIP24.44■■□□□ 1.5
CD4-202ENST00000437800 SYNJ1O43426 1573 aa24.43■■□□□ 1.5
CD4-202ENST00000437800 CUX1P39880 1505 aa24.37■■□□□ 1.49
CD4-202ENST00000437800 ERCC6Q03468 1493 aa24.35■■□□□ 1.49
CD4-202ENST00000437800 TRIM41Q8WV44 630 aa24.34■■□□□ 1.49
CD4-202ENST00000437800 TOP2BQ02880 1626 aa24.33■■□□□ 1.49
CD4-202ENST00000437800 BIVM-ERCC5R4GMW8 1640 aa24.33■■□□□ 1.49
CD4-202ENST00000437800 URB2Q14146 1524 aaKnown RBP24.29■■□□□ 1.48
CD4-202ENST00000437800 DNMBPQ6XZF7 1577 aa24.28■■□□□ 1.48
CD4-202ENST00000437800 TOPBP1Q92547 1522 aa24.25■■□□□ 1.47
CD4-202ENST00000437800 MRC2Q9UBG0 1479 aa24.25■■□□□ 1.47
CD4-202ENST00000437800 THOC2Q8NI27 1593 aaKnown RBP24.23■■□□□ 1.47
CD4-202ENST00000437800 WDR62O43379 1518 aa24.16■■□□□ 1.46
CD4-202ENST00000437800 FGD5Q6ZNL6 1462 aa24.16■■□□□ 1.46
CD4-202ENST00000437800 POLA1P09884 1462 aaPredicted RBP24.11■■□□□ 1.45
CD4-202ENST00000437800 RAD54L2Q9Y4B4 1467 aa24.02■■□□□ 1.44
CD4-202ENST00000437800 SOGA1O94964 1423 aa24.01■■□□□ 1.43
CD4-202ENST00000437800 CUX2O14529 1486 aa23.97■■□□□ 1.43
CD4-202ENST00000437800 RUSC2Q8N2Y8 1516 aa23.97■■□□□ 1.43
CD4-202ENST00000437800 WDR97A6NE52 1622 aa23.97■■□□□ 1.43
CD4-202ENST00000437800 TARBP1Q13395 1621 aaKnown RBP23.95■■□□□ 1.42
CD4-202ENST00000437800 PELP1Q8IZL8 1130 aaKnown RBP23.94■■□□□ 1.42
CD4-202ENST00000437800 FAM9AQ8IZU1 332 aaPredicted RBP23.94■■□□□ 1.42
CD4-202ENST00000437800 ABCA10Q8WWZ4 1543 aa23.91■■□□□ 1.42
CD4-202ENST00000437800 IFT140Q96RY7 1462 aa23.86■■□□□ 1.41
CD4-202ENST00000437800 LOC105371045A0A1W2PR82 267 aa23.84■■□□□ 1.41
CD4-202ENST00000437800 KIF27Q86VH2 1401 aa23.83■■□□□ 1.41
CD4-202ENST00000437800 ABCA5Q8WWZ7 1642 aa23.82■■□□□ 1.4
CD4-202ENST00000437800 EEA1Q15075 1411 aa23.81■■□□□ 1.4
CD4-202ENST00000437800 ZNF608Q9ULD9 1512 aaPredicted RBP23.79■■□□□ 1.4
CD4-202ENST00000437800 TDRD9Q8NDG6 1382 aaKnown RBP23.79■■□□□ 1.4
CD4-202ENST00000437800 HRCP23327 699 aa23.77■■□□□ 1.4
CD4-202ENST00000437800 EIF4G3O43432 1585 aaKnown RBP23.75■■□□□ 1.39
CD4-202ENST00000437800 AQRO60306 1485 aaKnown RBP eCLIP23.73■■□□□ 1.39
CD4-202ENST00000437800 GAPVD1Q14C86 1478 aa23.72■■□□□ 1.39
CD4-202ENST00000437800 PBRM1Q86U86 1689 aa23.71■■□□□ 1.39
CD4-202ENST00000437800 CSRNP3Q8WYN3 585 aa23.69■■□□□ 1.38
CD4-202ENST00000437800 EHMT2Q96KQ7 1210 aa23.66■■□□□ 1.38
CD4-202ENST00000437800 IGF1RP08069 1367 aa23.65■■□□□ 1.38
CD4-202ENST00000437800 ERICH3Q5RHP9 1530 aa23.62■■□□□ 1.37
CD4-202ENST00000437800 KIF21BO75037 1637 aa23.61■■□□□ 1.37
CD4-202ENST00000437800 GRIN2BQ13224 1484 aa23.59■■□□□ 1.37
CD4-202ENST00000437800 CUL7Q14999 1698 aa23.58■■□□□ 1.37
CD4-202ENST00000437800 PRXQ9BXM0 1461 aa23.58■■□□□ 1.37
CD4-202ENST00000437800 RAPGEF2Q9Y4G8 1499 aa23.56■■□□□ 1.36
CD4-202ENST00000437800 ADAMTS12P58397 1594 aa23.54■■□□□ 1.36
CD4-202ENST00000437800 SNAPC4Q5SXM2 1469 aa23.54■■□□□ 1.36
CD4-202ENST00000437800 CARMIL1Q5VZK9 1371 aa23.52■■□□□ 1.36
CD4-202ENST00000437800 GOLGA3Q08378 1498 aa23.52■■□□□ 1.36
CD4-202ENST00000437800 PCGF6Q9BYE7 350 aa23.48■■□□□ 1.35
CD4-202ENST00000437800 MAGI1Q96QZ7 1491 aaPredicted RBP23.45■■□□□ 1.34
CD4-202ENST00000437800 FHAD1B1AJZ9 1412 aa23.44■■□□□ 1.34
CD4-202ENST00000437800 UBTFP17480 764 aaKnown RBP23.38■■□□□ 1.33
CD4-202ENST00000437800 SYNJ2O15056 1496 aa23.36■■□□□ 1.33
CD4-202ENST00000437800 GRIN2AQ12879 1464 aa23.33■■□□□ 1.33
CD4-202ENST00000437800 CHD1O14646 1710 aa23.33■■□□□ 1.33
CD4-202ENST00000437800 TNIKQ9UKE5 1360 aa23.31■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms