RNA–Protein interactions for RNA: ENST00000435201.5

LIMK1-203, Transcript of LIM domain kinase 1, humanhuman

TSL 1 (best)

Gene LIMK1, Length 1,883 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1-203ENST00000435201 NISCHQ9Y2I1 1504 aa36.18■■■■□ 3.38
LIMK1-203ENST00000435201 CCDC180Q9P1Z9 1646 aa31.23■■■□□ 2.59
LIMK1-203ENST00000435201 ZCCHC6Q5VYS8 1495 aaKnown RBP30.54■■■□□ 2.48
LIMK1-203ENST00000435201 SHROOM4Q9ULL8 1493 aa30.04■■■□□ 2.4
LIMK1-203ENST00000435201 DCAF1Q9Y4B6 1507 aa29.9■■■□□ 2.38
LIMK1-203ENST00000435201 DCAF8L2P0C7V8 631 aa29.65■■■□□ 2.34
LIMK1-203ENST00000435201 MYO15BQ96JP2 1530 aa29.28■■■□□ 2.28
LIMK1-203ENST00000435201 SUPT5HO00267 1087 aaKnown RBP29.24■■■□□ 2.27
LIMK1-203ENST00000435201 NACADO15069 1562 aa28.91■■■□□ 2.22
LIMK1-203ENST00000435201 ABCC9O60706 1549 aa28.9■■■□□ 2.22
LIMK1-203ENST00000435201 SCRIBQ14160 1630 aa28.84■■■□□ 2.21
LIMK1-203ENST00000435201 RB1CC1Q8TDY2 1594 aa28.5■■■□□ 2.15
LIMK1-203ENST00000435201 CHIC1Q5VXU3 224 aa28.35■■■□□ 2.13
LIMK1-203ENST00000435201 RSF1Q96T23 1441 aaPredicted RBP28.33■■■□□ 2.13
LIMK1-203ENST00000435201 CECR2Q9BXF3 1484 aa28.05■■■□□ 2.08
LIMK1-203ENST00000435201 UNC13AQ9UPW8 1703 aa28■■■□□ 2.07
LIMK1-203ENST00000435201 MROH2BQ7Z745 1585 aa27.98■■■□□ 2.07
LIMK1-203ENST00000435201 BAZ1AQ9NRL2 1556 aaPredicted RBP27.89■■■□□ 2.05
LIMK1-203ENST00000435201 WIZO95785 1651 aa27.82■■■□□ 2.04
LIMK1-203ENST00000435201 SMARCA4P51532 1647 aa27.69■■■□□ 2.02
LIMK1-203ENST00000435201 BICRAQ9NZM4 1560 aa27.63■■■□□ 2.01
LIMK1-203ENST00000435201 TOP2AP11388 1531 aaKnown RBP27.53■■■□□ 2
LIMK1-203ENST00000435201 TRIM41Q8WV44 630 aa27.44■■□□□ 1.98
LIMK1-203ENST00000435201 PABPN1Q86U42 306 aaKnown RBP eCLIP27.38■■□□□ 1.97
LIMK1-203ENST00000435201 EIF4G1Q04637 1599 aaKnown RBP27.38■■□□□ 1.97
LIMK1-203ENST00000435201 SMARCA2P51531 1590 aa27.3■■□□□ 1.96
LIMK1-203ENST00000435201 PEG3Q9GZU2 1588 aa27.3■■□□□ 1.96
LIMK1-203ENST00000435201 LOC105371045A0A1W2PR82 267 aa27.3■■□□□ 1.96
LIMK1-203ENST00000435201 CCDC88BA6NC98 1476 aa27.26■■□□□ 1.95
LIMK1-203ENST00000435201 ATAD2BQ9ULI0 1458 aa27.03■■□□□ 1.92
LIMK1-203ENST00000435201 FAM9AQ8IZU1 332 aaPredicted RBP26.97■■□□□ 1.91
LIMK1-203ENST00000435201 ABCC8Q09428 1581 aa26.93■■□□□ 1.9
LIMK1-203ENST00000435201 BAZ1BQ9UIG0 1483 aaKnown RBP26.93■■□□□ 1.9
LIMK1-203ENST00000435201 PCGF6Q9BYE7 350 aa26.83■■□□□ 1.88
LIMK1-203ENST00000435201 HMGXB3Q12766 1538 aa26.71■■□□□ 1.87
LIMK1-203ENST00000435201 NCAPD3P42695 1498 aa26.66■■□□□ 1.86
LIMK1-203ENST00000435201 WRNQ14191 1432 aaPredicted RBP eCLIP26.66■■□□□ 1.86
LIMK1-203ENST00000435201 EEA1Q15075 1411 aa26.66■■□□□ 1.86
LIMK1-203ENST00000435201 TRIM26Q12899 539 aaPredicted RBP26.64■■□□□ 1.86
LIMK1-203ENST00000435201 HRCP23327 699 aa26.64■■□□□ 1.85
LIMK1-203ENST00000435201 EHMT2Q96KQ7 1210 aa26.57■■□□□ 1.84
LIMK1-203ENST00000435201 SOGA1O94964 1423 aa26.56■■□□□ 1.84
LIMK1-203ENST00000435201 SYNJ1O43426 1573 aa26.54■■□□□ 1.84
LIMK1-203ENST00000435201 CSRNP3Q8WYN3 585 aa26.42■■□□□ 1.82
LIMK1-203ENST00000435201 RUSC2Q8N2Y8 1516 aa26.41■■□□□ 1.82
LIMK1-203ENST00000435201 TOP2BQ02880 1626 aa26.38■■□□□ 1.81
LIMK1-203ENST00000435201 TNIKQ9UKE5 1360 aa26.37■■□□□ 1.81
LIMK1-203ENST00000435201 BIVM-ERCC5R4GMW8 1640 aa26.34■■□□□ 1.81
LIMK1-203ENST00000435201 GOLGA3Q08378 1498 aa26.34■■□□□ 1.81
LIMK1-203ENST00000435201 KIF21BO75037 1637 aa26.3■■□□□ 1.8
LIMK1-203ENST00000435201 CEP162Q5TB80 1403 aa26.3■■□□□ 1.8
LIMK1-203ENST00000435201 CFTRP13569 1480 aa26.27■■□□□ 1.8
LIMK1-203ENST00000435201 CEP164Q9UPV0 1460 aa26.26■■□□□ 1.79
LIMK1-203ENST00000435201 PRDM2Q13029 1718 aa26.25■■□□□ 1.79
LIMK1-203ENST00000435201 CC2D2AQ9P2K1 1620 aa26.18■■□□□ 1.78
LIMK1-203ENST00000435201 UBTFP17480 764 aaKnown RBP26.17■■□□□ 1.78
LIMK1-203ENST00000435201 CUX1P39880 1505 aa26.12■■□□□ 1.77
LIMK1-203ENST00000435201 CADPSQ9ULU8 1353 aa26.04■■□□□ 1.76
LIMK1-203ENST00000435201 RAPGEF2Q9Y4G8 1499 aa25.99■■□□□ 1.75
LIMK1-203ENST00000435201 ERICH3Q5RHP9 1530 aa25.98■■□□□ 1.75
LIMK1-203ENST00000435201 ZEB1P37275 1124 aaPredicted RBP25.97■■□□□ 1.75
LIMK1-203ENST00000435201 PPARGC1BQ86YN6 1023 aaKnown RBP25.97■■□□□ 1.75
LIMK1-203ENST00000435201 CLIP1P30622 1438 aa25.93■■□□□ 1.74
LIMK1-203ENST00000435201 KIF27Q86VH2 1401 aa25.92■■□□□ 1.74
LIMK1-203ENST00000435201 PRXQ9BXM0 1461 aa25.92■■□□□ 1.74
LIMK1-203ENST00000435201 VPS8Q8N3P4 1428 aa25.81■■□□□ 1.72
LIMK1-203ENST00000435201 FANCD2Q9BXW9 1451 aa25.77■■□□□ 1.72
LIMK1-203ENST00000435201 FGD5Q6ZNL6 1462 aa25.73■■□□□ 1.71
LIMK1-203ENST00000435201 CUX2O14529 1486 aa25.7■■□□□ 1.7
LIMK1-203ENST00000435201 DNMBPQ6XZF7 1577 aa25.68■■□□□ 1.7
LIMK1-203ENST00000435201 LAMC3Q9Y6N6 1575 aa25.66■■□□□ 1.7
LIMK1-203ENST00000435201 TTBK1Q5TCY1 1321 aaPredicted RBP25.64■■□□□ 1.69
LIMK1-203ENST00000435201 IGF1RP08069 1367 aa25.59■■□□□ 1.69
LIMK1-203ENST00000435201 NESP48681 1621 aa25.59■■□□□ 1.69
LIMK1-203ENST00000435201 ARAP1Q96P48 1450 aa25.59■■□□□ 1.69
LIMK1-203ENST00000435201 APLP2Q06481 763 aa25.57■■□□□ 1.68
LIMK1-203ENST00000435201 TOPBP1Q92547 1522 aa25.57■■□□□ 1.68
LIMK1-203ENST00000435201 RANGAP1P46060 587 aaPredicted RBP25.53■■□□□ 1.68
LIMK1-203ENST00000435201 ABCA10Q8WWZ4 1543 aa25.52■■□□□ 1.68
LIMK1-203ENST00000435201 POLA1P09884 1462 aaPredicted RBP25.5■■□□□ 1.67
LIMK1-203ENST00000435201 CARMIL1Q5VZK9 1371 aa25.49■■□□□ 1.67
LIMK1-203ENST00000435201 CCER1Q8TC90 406 aaPredicted RBP25.49■■□□□ 1.67
LIMK1-203ENST00000435201 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.48■■□□□ 1.67
LIMK1-203ENST00000435201 ARHGAP35Q9NRY4 1499 aa25.45■■□□□ 1.66
LIMK1-203ENST00000435201 PDS5BQ9NTI5 1447 aa25.43■■□□□ 1.66
LIMK1-203ENST00000435201 RAD54L2Q9Y4B4 1467 aa25.42■■□□□ 1.66
LIMK1-203ENST00000435201 URB2Q14146 1524 aaKnown RBP25.4■■□□□ 1.66
LIMK1-203ENST00000435201 WDR97A6NE52 1622 aa25.4■■□□□ 1.66
LIMK1-203ENST00000435201 CUL7Q14999 1698 aa25.39■■□□□ 1.65
LIMK1-203ENST00000435201 KIF21AQ7Z4S6 1674 aa25.32■■□□□ 1.64
LIMK1-203ENST00000435201 ABCA5Q8WWZ7 1642 aa25.27■■□□□ 1.64
LIMK1-203ENST00000435201 DNAJC5BQ9UF47 199 aa25.24■■□□□ 1.63
LIMK1-203ENST00000435201 MAP3K1Q13233 1512 aa25.23■■□□□ 1.63
LIMK1-203ENST00000435201 CTTNBP2Q8WZ74 1663 aa25.23■■□□□ 1.63
LIMK1-203ENST00000435201 HNRNPUL2Q1KMD3 747 aaKnown RBP25.2■■□□□ 1.62
LIMK1-203ENST00000435201 EFCAB5A4FU69 1503 aa25.2■■□□□ 1.62
LIMK1-203ENST00000435201 KANK4Q5T7N3 995 aaPredicted RBP25.19■■□□□ 1.62
LIMK1-203ENST00000435201 FHAD1B1AJZ9 1412 aa25.18■■□□□ 1.62
LIMK1-203ENST00000435201 TIAM1Q13009 1591 aa25.16■■□□□ 1.62
LIMK1-203ENST00000435201 GAPVD1Q14C86 1478 aa25.16■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms