RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 AEBP2Q6ZN18 517 aaPredicted RBP30.35■■■□□ 2.45
USP40-205ENST00000430158 NISCHQ9Y2I1 1504 aa30.01■■■□□ 2.39
USP40-205ENST00000430158 CHIC1Q5VXU3 224 aa28.32■■■□□ 2.12
USP40-205ENST00000430158 CCDC180Q9P1Z9 1646 aa26.54■■□□□ 1.84
USP40-205ENST00000430158 SENP3Q9H4L4 574 aaPredicted RBP25.86■■□□□ 1.73
USP40-205ENST00000430158 ABCC9O60706 1549 aa25.72■■□□□ 1.71
USP40-205ENST00000430158 PHF23Q9BUL5 403 aaPredicted RBP25.48■■□□□ 1.67
USP40-205ENST00000430158 ZCCHC6Q5VYS8 1495 aaKnown RBP25.04■■□□□ 1.6
USP40-205ENST00000430158 NACADO15069 1562 aa24.9■■□□□ 1.58
USP40-205ENST00000430158 MYO15BQ96JP2 1530 aa24.88■■□□□ 1.57
USP40-205ENST00000430158 DCAF1Q9Y4B6 1507 aa24.86■■□□□ 1.57
USP40-205ENST00000430158 RB1CC1Q8TDY2 1594 aa24.84■■□□□ 1.57
USP40-205ENST00000430158 DCAF8L2P0C7V8 631 aa24.82■■□□□ 1.56
USP40-205ENST00000430158 UNC13AQ9UPW8 1703 aa24.37■■□□□ 1.49
USP40-205ENST00000430158 FOXD1Q16676 465 aa24.22■■□□□ 1.47
USP40-205ENST00000430158 SCRIBQ14160 1630 aa24.21■■□□□ 1.47
USP40-205ENST00000430158 BICRAQ9NZM4 1560 aa24.19■■□□□ 1.46
USP40-205ENST00000430158 PABPN1Q86U42 306 aaKnown RBP eCLIP24.09■■□□□ 1.45
USP40-205ENST00000430158 SHROOM4Q9ULL8 1493 aa23.88■■□□□ 1.41
USP40-205ENST00000430158 DNAJC5BQ9UF47 199 aa23.52■■□□□ 1.36
USP40-205ENST00000430158 EIF4G1Q04637 1599 aaKnown RBP23.46■■□□□ 1.35
USP40-205ENST00000430158 CECR2Q9BXF3 1484 aa23.37■■□□□ 1.33
USP40-205ENST00000430158 CC2D2AQ9P2K1 1620 aa23.31■■□□□ 1.32
USP40-205ENST00000430158 SMARCA4P51532 1647 aa23.22■■□□□ 1.31
USP40-205ENST00000430158 BAZ1AQ9NRL2 1556 aaPredicted RBP23.19■■□□□ 1.3
USP40-205ENST00000430158 MROH2BQ7Z745 1585 aa23.14■■□□□ 1.29
USP40-205ENST00000430158 POTEDQ86YR6 584 aa23.08■■□□□ 1.29
USP40-205ENST00000430158 ATAD2BQ9ULI0 1458 aa23.05■■□□□ 1.28
USP40-205ENST00000430158 PEG3Q9GZU2 1588 aa23.03■■□□□ 1.28
USP40-205ENST00000430158 NCAPD3P42695 1498 aa23.01■■□□□ 1.27
USP40-205ENST00000430158 SMARCA2P51531 1590 aa22.98■■□□□ 1.27
USP40-205ENST00000430158 RSF1Q96T23 1441 aaPredicted RBP22.96■■□□□ 1.27
USP40-205ENST00000430158 HMGXB3Q12766 1538 aa22.89■■□□□ 1.26
USP40-205ENST00000430158 WIZO95785 1651 aa22.88■■□□□ 1.25
USP40-205ENST00000430158 BAZ1BQ9UIG0 1483 aaKnown RBP22.8■■□□□ 1.24
USP40-205ENST00000430158 MSH5O43196 834 aa22.77■■□□□ 1.24
USP40-205ENST00000430158 TOP2AP11388 1531 aaKnown RBP22.63■■□□□ 1.21
USP40-205ENST00000430158 PIAS4Q8N2W9 510 aaPredicted RBP22.45■■□□□ 1.18
USP40-205ENST00000430158 SUPT5HO00267 1087 aaKnown RBP22.44■■□□□ 1.18
USP40-205ENST00000430158 CCDC88BA6NC98 1476 aa22.4■■□□□ 1.18
USP40-205ENST00000430158 NESP48681 1621 aa22.37■■□□□ 1.17
USP40-205ENST00000430158 PLPPR3Q6T4P5 718 aa22.35■■□□□ 1.17
USP40-205ENST00000430158 CADPSQ9ULU8 1353 aa22.33■■□□□ 1.17
USP40-205ENST00000430158 PPP6R1Q9UPN7 881 aa22.32■■□□□ 1.16
USP40-205ENST00000430158 LAMC3Q9Y6N6 1575 aa22.31■■□□□ 1.16
USP40-205ENST00000430158 CFTRP13569 1480 aa22.26■■□□□ 1.15
USP40-205ENST00000430158 ADRA2BP18089 450 aa22.17■■□□□ 1.14
USP40-205ENST00000430158 PDS5BQ9NTI5 1447 aa22.13■■□□□ 1.13
USP40-205ENST00000430158 KIF21AQ7Z4S6 1674 aa22.1■■□□□ 1.13
USP40-205ENST00000430158 PRDM2Q13029 1718 aa22.09■■□□□ 1.13
USP40-205ENST00000430158 ERCC6Q03468 1493 aa22.08■■□□□ 1.12
USP40-205ENST00000430158 FANCD2Q9BXW9 1451 aa22.04■■□□□ 1.12
USP40-205ENST00000430158 THOC2Q8NI27 1593 aaKnown RBP21.99■■□□□ 1.11
USP40-205ENST00000430158 CEP164Q9UPV0 1460 aa21.96■■□□□ 1.11
USP40-205ENST00000430158 MRC2Q9UBG0 1479 aa21.91■■□□□ 1.1
USP40-205ENST00000430158 WDR62O43379 1518 aa21.86■■□□□ 1.09
USP40-205ENST00000430158 URB2Q14146 1524 aaKnown RBP21.85■■□□□ 1.09
USP40-205ENST00000430158 CUX2O14529 1486 aa21.83■■□□□ 1.09
USP40-205ENST00000430158 TOPBP1Q92547 1522 aa21.75■■□□□ 1.07
USP40-205ENST00000430158 DNMBPQ6XZF7 1577 aa21.72■■□□□ 1.07
USP40-205ENST00000430158 ABCC8Q09428 1581 aa21.71■■□□□ 1.07
USP40-205ENST00000430158 CUX1P39880 1505 aa21.69■■□□□ 1.06
USP40-205ENST00000430158 WRNQ14191 1432 aaPredicted RBP eCLIP21.58■■□□□ 1.05
USP40-205ENST00000430158 POLA1P09884 1462 aaPredicted RBP21.58■■□□□ 1.04
USP40-205ENST00000430158 SYNJ1O43426 1573 aa21.56■■□□□ 1.04
USP40-205ENST00000430158 TOP2BQ02880 1626 aa21.55■■□□□ 1.04
USP40-205ENST00000430158 BIVM-ERCC5R4GMW8 1640 aa21.55■■□□□ 1.04
USP40-205ENST00000430158 FGD5Q6ZNL6 1462 aa21.53■■□□□ 1.04
USP40-205ENST00000430158 IFT140Q96RY7 1462 aa21.52■■□□□ 1.04
USP40-205ENST00000430158 TARBP1Q13395 1621 aaKnown RBP21.52■■□□□ 1.04
USP40-205ENST00000430158 RAD54L2Q9Y4B4 1467 aa21.48■■□□□ 1.03
USP40-205ENST00000430158 SOGA1O94964 1423 aa21.46■■□□□ 1.03
USP40-205ENST00000430158 ZNF608Q9ULD9 1512 aaPredicted RBP21.45■■□□□ 1.02
USP40-205ENST00000430158 WDR97A6NE52 1622 aa21.38■■□□□ 1.01
USP40-205ENST00000430158 ABCA10Q8WWZ4 1543 aa21.37■■□□□ 1.01
USP40-205ENST00000430158 AQRO60306 1485 aaKnown RBP eCLIP21.33■■□□□ 1.01
USP40-205ENST00000430158 EIF4G3O43432 1585 aaKnown RBP21.33■■□□□ 1.01
USP40-205ENST00000430158 TDRD9Q8NDG6 1382 aaKnown RBP21.33■■□□□ 1
USP40-205ENST00000430158 ABCA5Q8WWZ7 1642 aa21.26■□□□□ 0.99
USP40-205ENST00000430158 GAPVD1Q14C86 1478 aa21.21■□□□□ 0.99
USP40-205ENST00000430158 TRIM41Q8WV44 630 aa21.18■□□□□ 0.98
USP40-205ENST00000430158 GRIN2BQ13224 1484 aa21.18■□□□□ 0.98
USP40-205ENST00000430158 PBRM1Q86U86 1689 aa21.15■□□□□ 0.98
USP40-205ENST00000430158 SNAPC4Q5SXM2 1469 aa21.12■□□□□ 0.97
USP40-205ENST00000430158 MAGI1Q96QZ7 1491 aaPredicted RBP21.1■□□□□ 0.97
USP40-205ENST00000430158 ERICH3Q5RHP9 1530 aa21.09■□□□□ 0.97
USP40-205ENST00000430158 KIF27Q86VH2 1401 aa21.09■□□□□ 0.97
USP40-205ENST00000430158 IGF1RP08069 1367 aa21.07■□□□□ 0.96
USP40-205ENST00000430158 RUSC2Q8N2Y8 1516 aa21.06■□□□□ 0.96
USP40-205ENST00000430158 CHD1O14646 1710 aa21.03■□□□□ 0.96
USP40-205ENST00000430158 ADAMTS12P58397 1594 aa21.02■□□□□ 0.96
USP40-205ENST00000430158 SYNJ2O15056 1496 aa21.02■□□□□ 0.96
USP40-205ENST00000430158 FHAD1B1AJZ9 1412 aa20.98■□□□□ 0.95
USP40-205ENST00000430158 OSCARQ8IYS5 282 aa20.96■□□□□ 0.95
USP40-205ENST00000430158 CHMP7Q8WUX9 453 aaPredicted RBP20.94■□□□□ 0.94
USP40-205ENST00000430158 DNAJC5Q9H3Z4 198 aa20.94■□□□□ 0.94
USP40-205ENST00000430158 FBLN2P98095 1184 aa20.92■□□□□ 0.94
USP40-205ENST00000430158 GRIN2AQ12879 1464 aa20.92■□□□□ 0.94
USP40-205ENST00000430158 CUL7Q14999 1698 aa20.92■□□□□ 0.94
USP40-205ENST00000430158 CARMIL1Q5VZK9 1371 aa20.89■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 108.9 ms