RNA–Protein interactions for RNA: ENST00000430085.5

CALD1-207, Transcript of caldesmon 1, humanhuman

TSL 2

Gene CALD1, Length 1,938 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CALD1-207ENST00000430085 NISCHQ9Y2I1 1504 aa31.95■■■□□ 2.71
CALD1-207ENST00000430085 CCDC180Q9P1Z9 1646 aa28.08■■■□□ 2.09
CALD1-207ENST00000430085 ABCC9O60706 1549 aa27.18■■□□□ 1.94
CALD1-207ENST00000430085 ZCCHC6Q5VYS8 1495 aaKnown RBP26.87■■□□□ 1.89
CALD1-207ENST00000430085 DCAF8L2P0C7V8 631 aa26.44■■□□□ 1.82
CALD1-207ENST00000430085 DCAF1Q9Y4B6 1507 aa26.39■■□□□ 1.82
CALD1-207ENST00000430085 NACADO15069 1562 aa26.29■■□□□ 1.8
CALD1-207ENST00000430085 RB1CC1Q8TDY2 1594 aa26.26■■□□□ 1.79
CALD1-207ENST00000430085 SHROOM4Q9ULL8 1493 aa26.24■■□□□ 1.79
CALD1-207ENST00000430085 MYO15BQ96JP2 1530 aa26.21■■□□□ 1.79
CALD1-207ENST00000430085 UNC13AQ9UPW8 1703 aa25.77■■□□□ 1.72
CALD1-207ENST00000430085 SCRIBQ14160 1630 aa25.7■■□□□ 1.71
CALD1-207ENST00000430085 BICRAQ9NZM4 1560 aa25.48■■□□□ 1.67
CALD1-207ENST00000430085 PABPN1Q86U42 306 aaKnown RBP eCLIP25.45■■□□□ 1.67
CALD1-207ENST00000430085 SUPT5HO00267 1087 aaKnown RBP25.33■■□□□ 1.65
CALD1-207ENST00000430085 RSF1Q96T23 1441 aaPredicted RBP24.84■■□□□ 1.57
CALD1-207ENST00000430085 CECR2Q9BXF3 1484 aa24.82■■□□□ 1.56
CALD1-207ENST00000430085 EIF4G1Q04637 1599 aaKnown RBP24.78■■□□□ 1.56
CALD1-207ENST00000430085 MROH2BQ7Z745 1585 aa24.7■■□□□ 1.54
CALD1-207ENST00000430085 BAZ1AQ9NRL2 1556 aaPredicted RBP24.67■■□□□ 1.54
CALD1-207ENST00000430085 DNAJC5BQ9UF47 199 aa24.64■■□□□ 1.53
CALD1-207ENST00000430085 CC2D2AQ9P2K1 1620 aa24.61■■□□□ 1.53
CALD1-207ENST00000430085 SMARCA4P51532 1647 aa24.59■■□□□ 1.53
CALD1-207ENST00000430085 WIZO95785 1651 aa24.52■■□□□ 1.52
CALD1-207ENST00000430085 ATAD2BQ9ULI0 1458 aa24.34■■□□□ 1.49
CALD1-207ENST00000430085 SMARCA2P51531 1590 aa24.31■■□□□ 1.48
CALD1-207ENST00000430085 PEG3Q9GZU2 1588 aa24.31■■□□□ 1.48
CALD1-207ENST00000430085 CHIC1Q5VXU3 224 aa24.27■■□□□ 1.48
CALD1-207ENST00000430085 TOP2AP11388 1531 aaKnown RBP24.26■■□□□ 1.47
CALD1-207ENST00000430085 NCAPD3P42695 1498 aa24.25■■□□□ 1.47
CALD1-207ENST00000430085 HMGXB3Q12766 1538 aa24.18■■□□□ 1.46
CALD1-207ENST00000430085 BAZ1BQ9UIG0 1483 aaKnown RBP24.16■■□□□ 1.46
CALD1-207ENST00000430085 CCDC88BA6NC98 1476 aa24.02■■□□□ 1.44
CALD1-207ENST00000430085 TRIM41Q8WV44 630 aa23.8■■□□□ 1.4
CALD1-207ENST00000430085 NESP48681 1621 aa23.63■■□□□ 1.37
CALD1-207ENST00000430085 ABCC8Q09428 1581 aa23.58■■□□□ 1.36
CALD1-207ENST00000430085 LAMC3Q9Y6N6 1575 aa23.58■■□□□ 1.36
CALD1-207ENST00000430085 CADPSQ9ULU8 1353 aa23.57■■□□□ 1.36
CALD1-207ENST00000430085 CFTRP13569 1480 aa23.5■■□□□ 1.35
CALD1-207ENST00000430085 PRDM2Q13029 1718 aa23.43■■□□□ 1.34
CALD1-207ENST00000430085 WRNQ14191 1432 aaPredicted RBP eCLIP23.41■■□□□ 1.34
CALD1-207ENST00000430085 KIF21AQ7Z4S6 1674 aa23.39■■□□□ 1.34
CALD1-207ENST00000430085 FAM9AQ8IZU1 332 aaPredicted RBP23.39■■□□□ 1.33
CALD1-207ENST00000430085 LOC105371045A0A1W2PR82 267 aa23.38■■□□□ 1.33
CALD1-207ENST00000430085 PDS5BQ9NTI5 1447 aa23.38■■□□□ 1.33
CALD1-207ENST00000430085 ERCC6Q03468 1493 aa23.38■■□□□ 1.33
CALD1-207ENST00000430085 FANCD2Q9BXW9 1451 aa23.32■■□□□ 1.32
CALD1-207ENST00000430085 SYNJ1O43426 1573 aa23.29■■□□□ 1.32
CALD1-207ENST00000430085 CEP164Q9UPV0 1460 aa23.25■■□□□ 1.31
CALD1-207ENST00000430085 THOC2Q8NI27 1593 aaKnown RBP23.2■■□□□ 1.3
CALD1-207ENST00000430085 TOP2BQ02880 1626 aa23.18■■□□□ 1.3
CALD1-207ENST00000430085 SOGA1O94964 1423 aa23.16■■□□□ 1.3
CALD1-207ENST00000430085 EEA1Q15075 1411 aa23.15■■□□□ 1.3
CALD1-207ENST00000430085 BIVM-ERCC5R4GMW8 1640 aa23.15■■□□□ 1.3
CALD1-207ENST00000430085 MRC2Q9UBG0 1479 aa23.14■■□□□ 1.3
CALD1-207ENST00000430085 CUX1P39880 1505 aa23.09■■□□□ 1.29
CALD1-207ENST00000430085 EHMT2Q96KQ7 1210 aa23.08■■□□□ 1.29
CALD1-207ENST00000430085 URB2Q14146 1524 aaKnown RBP23.08■■□□□ 1.29
CALD1-207ENST00000430085 WDR62O43379 1518 aa23.08■■□□□ 1.28
CALD1-207ENST00000430085 RUSC2Q8N2Y8 1516 aa23.05■■□□□ 1.28
CALD1-207ENST00000430085 CSRNP3Q8WYN3 585 aa23.02■■□□□ 1.28
CALD1-207ENST00000430085 TOPBP1Q92547 1522 aa22.99■■□□□ 1.27
CALD1-207ENST00000430085 DNMBPQ6XZF7 1577 aa22.99■■□□□ 1.27
CALD1-207ENST00000430085 CUX2O14529 1486 aa22.97■■□□□ 1.27
CALD1-207ENST00000430085 GOLGA3Q08378 1498 aa22.85■■□□□ 1.25
CALD1-207ENST00000430085 KIF21BO75037 1637 aa22.83■■□□□ 1.25
CALD1-207ENST00000430085 FGD5Q6ZNL6 1462 aa22.82■■□□□ 1.24
CALD1-207ENST00000430085 KIF27Q86VH2 1401 aa22.82■■□□□ 1.24
CALD1-207ENST00000430085 POLA1P09884 1462 aaPredicted RBP22.82■■□□□ 1.24
CALD1-207ENST00000430085 TNIKQ9UKE5 1360 aa22.79■■□□□ 1.24
CALD1-207ENST00000430085 UBTFP17480 764 aaKnown RBP22.78■■□□□ 1.24
CALD1-207ENST00000430085 IFT140Q96RY7 1462 aa22.74■■□□□ 1.23
CALD1-207ENST00000430085 RAD54L2Q9Y4B4 1467 aa22.74■■□□□ 1.23
CALD1-207ENST00000430085 TARBP1Q13395 1621 aaKnown RBP22.73■■□□□ 1.23
CALD1-207ENST00000430085 CEP162Q5TB80 1403 aa22.7■■□□□ 1.22
CALD1-207ENST00000430085 RAPGEF2Q9Y4G8 1499 aa22.68■■□□□ 1.22
CALD1-207ENST00000430085 PRXQ9BXM0 1461 aa22.66■■□□□ 1.22
CALD1-207ENST00000430085 ERICH3Q5RHP9 1530 aa22.65■■□□□ 1.22
CALD1-207ENST00000430085 ZNF608Q9ULD9 1512 aaPredicted RBP22.65■■□□□ 1.22
CALD1-207ENST00000430085 WDR97A6NE52 1622 aa22.65■■□□□ 1.22
CALD1-207ENST00000430085 ABCA10Q8WWZ4 1543 aa22.61■■□□□ 1.21
CALD1-207ENST00000430085 EIF4G3O43432 1585 aaKnown RBP22.59■■□□□ 1.21
CALD1-207ENST00000430085 IGF1RP08069 1367 aa22.56■■□□□ 1.2
CALD1-207ENST00000430085 TDRD9Q8NDG6 1382 aaKnown RBP22.56■■□□□ 1.2
CALD1-207ENST00000430085 AQRO60306 1485 aaKnown RBP eCLIP22.56■■□□□ 1.25e-16■■□□□ 11.9
CALD1-207ENST00000430085 ABCA5Q8WWZ7 1642 aa22.51■■□□□ 1.19
CALD1-207ENST00000430085 PCGF6Q9BYE7 350 aa22.5■■□□□ 1.19
CALD1-207ENST00000430085 CLIP1P30622 1438 aa22.5■■□□□ 1.19
CALD1-207ENST00000430085 CARMIL1Q5VZK9 1371 aa22.48■■□□□ 1.19
CALD1-207ENST00000430085 PBRM1Q86U86 1689 aa22.46■■□□□ 1.19
CALD1-207ENST00000430085 GAPVD1Q14C86 1478 aa22.46■■□□□ 1.19
CALD1-207ENST00000430085 TRIM26Q12899 539 aaPredicted RBP22.45■■□□□ 1.18
CALD1-207ENST00000430085 CUL7Q14999 1698 aa22.4■■□□□ 1.18
CALD1-207ENST00000430085 GRIN2BQ13224 1484 aa22.4■■□□□ 1.18
CALD1-207ENST00000430085 RANGAP1P46060 587 aaPredicted RBP22.39■■□□□ 1.18
CALD1-207ENST00000430085 SNAPC4Q5SXM2 1469 aa22.36■■□□□ 1.17
CALD1-207ENST00000430085 PPARGC1BQ86YN6 1023 aaKnown RBP22.31■■□□□ 1.16
CALD1-207ENST00000430085 VPS8Q8N3P4 1428 aa22.31■■□□□ 1.16
CALD1-207ENST00000430085 MAGI1Q96QZ7 1491 aaPredicted RBP22.31■■□□□ 1.16
CALD1-207ENST00000430085 CHD1O14646 1710 aa22.27■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms