RNA–Protein interactions for RNA: ENST00000430029.1

PTCD1-203, Transcript of pentatricopeptide repeat domain 1, humanhuman

TSL 4

Gene PTCD1, Length 556 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1-203ENST00000430029 NISCHQ9Y2I1 1504 aa45.97■■■■■ 4.95
PTCD1-203ENST00000430029 CCDC180Q9P1Z9 1646 aa40.5■■■■■ 4.07
PTCD1-203ENST00000430029 ABCC9O60706 1549 aa39.04■■■■□ 3.84
PTCD1-203ENST00000430029 ZCCHC6Q5VYS8 1495 aaKnown RBP38.45■■■■□ 3.75
PTCD1-203ENST00000430029 DCAF8L2P0C7V8 631 aa38.13■■■■□ 3.69
PTCD1-203ENST00000430029 DCAF1Q9Y4B6 1507 aa38.03■■■■□ 3.68
PTCD1-203ENST00000430029 NACADO15069 1562 aa37.92■■■■□ 3.66
PTCD1-203ENST00000430029 MYO15BQ96JP2 1530 aa37.91■■■■□ 3.66
PTCD1-203ENST00000430029 RB1CC1Q8TDY2 1594 aa37.78■■■■□ 3.64
PTCD1-203ENST00000430029 SCRIBQ14160 1630 aa37.08■■■■□ 3.53
PTCD1-203ENST00000430029 UNC13AQ9UPW8 1703 aa37.01■■■■□ 3.51
PTCD1-203ENST00000430029 SHROOM4Q9ULL8 1493 aa36.8■■■■□ 3.48
PTCD1-203ENST00000430029 BICRAQ9NZM4 1560 aa36.7■■■■□ 3.47
PTCD1-203ENST00000430029 PABPN1Q86U42 306 aaKnown RBP eCLIP36.63■■■■□ 3.45
PTCD1-203ENST00000430029 CECR2Q9BXF3 1484 aa35.8■■■■□ 3.32
PTCD1-203ENST00000430029 DNAJC5BQ9UF47 199 aa35.68■■■■□ 3.3
PTCD1-203ENST00000430029 EIF4G1Q04637 1599 aaKnown RBP35.64■■■■□ 3.3
PTCD1-203ENST00000430029 BAZ1AQ9NRL2 1556 aaPredicted RBP35.55■■■■□ 3.28
PTCD1-203ENST00000430029 SMARCA4P51532 1647 aa35.51■■■■□ 3.28
PTCD1-203ENST00000430029 MROH2BQ7Z745 1585 aa35.47■■■■□ 3.27
PTCD1-203ENST00000430029 CC2D2AQ9P2K1 1620 aa35.32■■■■□ 3.25
PTCD1-203ENST00000430029 RSF1Q96T23 1441 aaPredicted RBP35.32■■■■□ 3.24
PTCD1-203ENST00000430029 ATAD2BQ9ULI0 1458 aa35.16■■■■□ 3.22
PTCD1-203ENST00000430029 PEG3Q9GZU2 1588 aa35.14■■■■□ 3.22
PTCD1-203ENST00000430029 WIZO95785 1651 aa35.13■■■■□ 3.21
PTCD1-203ENST00000430029 SMARCA2P51531 1590 aa35.08■■■■□ 3.21
PTCD1-203ENST00000430029 NCAPD3P42695 1498 aa35.01■■■■□ 3.19
PTCD1-203ENST00000430029 SUPT5HO00267 1087 aaKnown RBP34.95■■■■□ 3.19
PTCD1-203ENST00000430029 HMGXB3Q12766 1538 aa34.88■■■■□ 3.17
PTCD1-203ENST00000430029 BAZ1BQ9UIG0 1483 aaKnown RBP34.87■■■■□ 3.17
PTCD1-203ENST00000430029 TOP2AP11388 1531 aaKnown RBP34.76■■■■□ 3.15
PTCD1-203ENST00000430029 CCDC88BA6NC98 1476 aa34.38■■■■□ 3.09
PTCD1-203ENST00000430029 CADPSQ9ULU8 1353 aa34.03■■■■□ 3.04
PTCD1-203ENST00000430029 NESP48681 1621 aa34.02■■■■□ 3.04
PTCD1-203ENST00000430029 CFTRP13569 1480 aa33.98■■■■□ 3.03
PTCD1-203ENST00000430029 LAMC3Q9Y6N6 1575 aa33.94■■■■□ 3.02
PTCD1-203ENST00000430029 PRDM2Q13029 1718 aa33.74■■■□□ 2.99
PTCD1-203ENST00000430029 PDS5BQ9NTI5 1447 aa33.69■■■□□ 2.98
PTCD1-203ENST00000430029 FANCD2Q9BXW9 1451 aa33.64■■■□□ 2.98
PTCD1-203ENST00000430029 KIF21AQ7Z4S6 1674 aa33.59■■■□□ 2.97
PTCD1-203ENST00000430029 ERCC6Q03468 1493 aa33.53■■■□□ 2.96
PTCD1-203ENST00000430029 CEP164Q9UPV0 1460 aa33.51■■■□□ 2.96
PTCD1-203ENST00000430029 ABCC8Q09428 1581 aa33.35■■■□□ 2.93
PTCD1-203ENST00000430029 MRC2Q9UBG0 1479 aa33.33■■■□□ 2.93
PTCD1-203ENST00000430029 THOC2Q8NI27 1593 aaKnown RBP33.3■■■□□ 2.92
PTCD1-203ENST00000430029 URB2Q14146 1524 aaKnown RBP33.3■■■□□ 2.92
PTCD1-203ENST00000430029 WRNQ14191 1432 aaPredicted RBP eCLIP33.25■■■□□ 2.91
PTCD1-203ENST00000430029 CUX1P39880 1505 aa33.23■■■□□ 2.91
PTCD1-203ENST00000430029 WDR62O43379 1518 aa33.2■■■□□ 2.91
PTCD1-203ENST00000430029 TOPBP1Q92547 1522 aa33.19■■■□□ 2.9
PTCD1-203ENST00000430029 DNMBPQ6XZF7 1577 aa33.19■■■□□ 2.9
PTCD1-203ENST00000430029 SYNJ1O43426 1573 aa33.17■■■□□ 2.9
PTCD1-203ENST00000430029 TOP2BQ02880 1626 aa33.1■■■□□ 2.89
PTCD1-203ENST00000430029 BIVM-ERCC5R4GMW8 1640 aa33.08■■■□□ 2.89
PTCD1-203ENST00000430029 CHIC1Q5VXU3 224 aa33.06■■■□□ 2.88
PTCD1-203ENST00000430029 FGD5Q6ZNL6 1462 aa32.99■■■□□ 2.87
PTCD1-203ENST00000430029 CUX2O14529 1486 aa32.98■■■□□ 2.87
PTCD1-203ENST00000430029 POLA1P09884 1462 aaPredicted RBP32.97■■■□□ 2.87
PTCD1-203ENST00000430029 TRIM41Q8WV44 630 aa32.93■■■□□ 2.86
PTCD1-203ENST00000430029 RAD54L2Q9Y4B4 1467 aa32.85■■■□□ 2.85
PTCD1-203ENST00000430029 SOGA1O94964 1423 aa32.83■■■□□ 2.85
PTCD1-203ENST00000430029 TARBP1Q13395 1621 aaKnown RBP32.78■■■□□ 2.84
PTCD1-203ENST00000430029 IFT140Q96RY7 1462 aa32.78■■■□□ 2.84
PTCD1-203ENST00000430029 DNAJC5Q9H3Z4 198 aa32.77■■■□□ 2.84
PTCD1-203ENST00000430029 ABCA10Q8WWZ4 1543 aa32.69■■■□□ 2.82
PTCD1-203ENST00000430029 WDR97A6NE52 1622 aa32.68■■■□□ 2.82
PTCD1-203ENST00000430029 ZNF608Q9ULD9 1512 aaPredicted RBP32.64■■■□□ 2.82
PTCD1-203ENST00000430029 TDRD9Q8NDG6 1382 aaKnown RBP32.58■■■□□ 2.81
PTCD1-203ENST00000430029 AQRO60306 1485 aaKnown RBP eCLIP32.54■■■□□ 2.8
PTCD1-203ENST00000430029 RUSC2Q8N2Y8 1516 aa32.51■■■□□ 2.79
PTCD1-203ENST00000430029 EIF4G3O43432 1585 aaKnown RBP32.5■■■□□ 2.79
PTCD1-203ENST00000430029 ABCA5Q8WWZ7 1642 aa32.5■■■□□ 2.79
PTCD1-203ENST00000430029 KIF27Q86VH2 1401 aa32.47■■■□□ 2.79
PTCD1-203ENST00000430029 GAPVD1Q14C86 1478 aa32.45■■■□□ 2.79
PTCD1-203ENST00000430029 GRIN2BQ13224 1484 aa32.35■■■□□ 2.77
PTCD1-203ENST00000430029 PBRM1Q86U86 1689 aa32.34■■■□□ 2.77
PTCD1-203ENST00000430029 FAM9AQ8IZU1 332 aaPredicted RBP32.31■■■□□ 2.76
PTCD1-203ENST00000430029 IGF1RP08069 1367 aa32.31■■■□□ 2.76
PTCD1-203ENST00000430029 EEA1Q15075 1411 aa32.3■■■□□ 2.76
PTCD1-203ENST00000430029 ERICH3Q5RHP9 1530 aa32.29■■■□□ 2.76
PTCD1-203ENST00000430029 SNAPC4Q5SXM2 1469 aa32.23■■■□□ 2.75
PTCD1-203ENST00000430029 CSRNP3Q8WYN3 585 aa32.21■■■□□ 2.75
PTCD1-203ENST00000430029 MAGI1Q96QZ7 1491 aaPredicted RBP32.17■■■□□ 2.74
PTCD1-203ENST00000430029 ADAMTS12P58397 1594 aa32.14■■■□□ 2.74
PTCD1-203ENST00000430029 CUL7Q14999 1698 aa32.11■■■□□ 2.73
PTCD1-203ENST00000430029 CARMIL1Q5VZK9 1371 aa32.11■■■□□ 2.73
PTCD1-203ENST00000430029 FHAD1B1AJZ9 1412 aa32.1■■■□□ 2.73
PTCD1-203ENST00000430029 PRXQ9BXM0 1461 aa32.07■■■□□ 2.72
PTCD1-203ENST00000430029 SYNJ2O15056 1496 aa32.05■■■□□ 2.72
PTCD1-203ENST00000430029 CHMP7Q8WUX9 453 aaPredicted RBP31.98■■■□□ 2.71
PTCD1-203ENST00000430029 RAPGEF2Q9Y4G8 1499 aa31.97■■■□□ 2.71
PTCD1-203ENST00000430029 FBLN2P98095 1184 aa31.97■■■□□ 2.71
PTCD1-203ENST00000430029 CHD1O14646 1710 aa31.96■■■□□ 2.71
PTCD1-203ENST00000430029 KIF21BO75037 1637 aa31.94■■■□□ 2.7
PTCD1-203ENST00000430029 GRIN2AQ12879 1464 aa31.94■■■□□ 2.7
PTCD1-203ENST00000430029 EHMT2Q96KQ7 1210 aa31.85■■■□□ 2.69
PTCD1-203ENST00000430029 GOLGA3Q08378 1498 aa31.81■■■□□ 2.68
PTCD1-203ENST00000430029 CEP170Q5SW79 1584 aa31.78■■■□□ 2.68
PTCD1-203ENST00000430029 NUP160Q12769 1436 aa31.78■■■□□ 2.68
PTCD1-203ENST00000430029 LOC105371045A0A1W2PR82 267 aa31.73■■■□□ 2.67
Retrieved 100 of 20,778 RNA–protein pairs in 237.8 ms